genome.fa.s1.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  18  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5946503--5946554	20	2.5	20	79	14	61	65	0	1	32	1.04
5946522--5946546	11	2.3	11	100	0	50	76	0	0	24	0.80
5952488--5952525	15	2.6	15	88	12	53	23	0	2	73	0.95
5953102--5953407	157	1.9	158	81	4	368	32	14	20	33	1.93
5954061--5954132	29	2.5	29	80	13	85	37	6	22	33	1.81
5954086--5954199	29	3.9	30	85	5	128	36	4	21	36	1.74
5954091--5954203	57	2.0	57	84	6	149	37	3	23	36	1.72
5955320--5955370	21	2.4	21	87	6	68	41	5	1	50	1.37
5955295--5955367	21	3.7	18	77	16	65	39	5	1	53	1.33
5956066--5956119	22	2.4	22	76	11	56	55	5	0	38	1.23
5956266--5956303	19	2.0	20	84	5	51	60	18	5	15	1.53
5959550--5959586	18	2.1	18	95	5	67	43	0	0	56	0.99
5959546--5959617	34	2.2	34	85	5	94	47	2	0	50	1.15
5960364--5960392	10	2.7	11	94	5	51	17	0	0	82	0.66
5961206--5961249	22	2.0	22	82	8	54	56	4	0	38	1.20
5961700--5961788	40	2.2	40	89	0	133	32	20	23	23	1.98
5961755--5962044	41	7.1	41	81	0	258	35	18	26	18	1.95
5961715--5961954	82	2.9	82	82	3	207	35	20	25	19	1.96
5961795--5962026	82	2.8	82	86	0	293	34	19	26	19	1.96
5961799--5962043	123	2.0	123	82	3	296	32	19	27	20	1.97
5962829--5962943	56	2.0	57	80	8	128	40	10	6	42	1.66
5964517--5964600	43	2.0	42	88	2	123	23	19	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5964548--5964661	60	1.9	60	87	3	167	25	18	27	28	1.98
5964610--5964702	43	2.2	43	86	0	123	29	18	24	27	1.98
5964641--5964772	43	3.1	42	78	7	113	28	15	25	31	1.95
5965183--5965252	28	2.5	28	77	13	72	30	0	4	65	1.11
5965182--5965234	19	2.8	19	78	15	56	26	0	3	69	1.05
5965182--5965501	9	33.8	9	67	16	100	35	2	3	59	1.27
5965718--5965756	2	19.5	2	100	0	78	48	0	0	51	1.00
5970076--5970133	21	2.6	22	81	15	75	39	1	3	55	1.27
5970088--5970144	21	2.8	21	81	2	62	38	5	3	52	1.41
5970168--5970202	17	1.9	19	88	11	56	68	0	0	31	0.90
5970542--5970608	26	2.5	25	77	15	64	58	1	1	38	1.17
5970881--5971038	9	16.9	9	66	16	54	57	4	3	34	1.37
5970881--5970923	19	2.3	19	84	11	54	69	0	4	25	1.07
5970884--5970948	26	2.4	27	87	5	87	64	1	4	29	1.22
5982240--5982273	15	2.2	16	89	5	52	50	5	0	44	1.26
5983747--5983784	2	19.0	2	100	0	76	50	0	0	50	1.00
5999505--5999568	16	4.2	16	76	13	64	54	0	0	45	0.99
5999526--5999576	24	2.1	24	100	0	102	56	0	0	43	0.99
6000037--6000089	25	2.1	25	86	6	72	62	1	0	35	1.06
6000106--6000216	10	11.2	10	68	21	56	64	0	2	31	1.13
6000106--6000180	18	4.2	18	68	14	57	65	1	1	32	1.09
6001954--6002091	58	2.4	58	83	3	161	35	5	26	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6001981--6002093	58	1.9	59	90	1	183	33	3	28	34	1.74
6001984--6002120	29	4.7	30	73	16	112	31	4	29	35	1.77
6002096--6002147	26	2.0	26	84	3	68	36	5	19	38	1.76
6003154--6003199	25	1.9	23	86	8	65	41	2	0	56	1.11
6003160--6003214	25	2.2	24	78	9	56	47	3	0	49	1.19
6004509--6004612	6	17.5	6	71	20	76	40	4	0	53	1.28
6004509--6004612	17	6.2	16	73	16	86	40	4	0	53	1.28
6004526--6004595	11	5.8	11	70	18	50	40	7	0	52	1.29
6004510--6004607	25	3.9	25	92	5	146	40	5	1	53	1.30
6005451--6005483	3	11.0	3	100	0	66	66	0	0	33	0.92
6006326--6006642	161	2.0	161	89	2	485	25	16	13	44	1.84
6006732--6007042	58	5.3	58	88	6	443	33	28	2	35	1.71
6006732--6007042	59	5.3	59	89	5	463	33	28	2	35	1.71
6010134--6010564	39	10.9	39	69	12	148	25	17	25	31	1.97
6010050--6010600	79	6.9	79	84	1	625	26	17	24	31	1.97
6010738--6010857	50	2.4	50	83	2	143	21	26	16	35	1.95
6015501--6015576	31	2.5	31	89	4	111	42	11	17	28	1.84
6018027--6018202	63	2.8	62	88	4	259	56	2	0	40	1.16
6019854--6019886	15	2.2	15	100	0	66	51	12	30	6	1.63
6021324--6021383	30	2.1	29	84	6	77	33	8	1	56	1.39
6025429--6025483	28	2.0	27	89	10	85	61	3	12	21	1.46
6031248--6031280	3	11.0	3	100	0	66	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6047710--6047761	2	26.5	2	96	3	97	50	0	0	50	1.00
6049719--6049764	21	2.2	20	81	11	58	65	2	2	30	1.16
6051689--6051713	12	2.1	12	100	0	50	44	0	8	48	1.32
6056338--6057002	59	11.2	59	85	2	834	34	5	28	31	1.79
6056338--6057002	178	3.7	177	88	3	953	34	5	28	31	1.79
6056996--6057125	30	4.3	30	93	1	190	35	4	23	36	1.76
6056338--6057002	119	5.6	117	85	3	830	34	5	28	31	1.79
6059036--6059130	18	5.5	17	75	17	63	50	0	3	46	1.17
6059037--6059099	6	9.8	6	75	17	56	49	0	3	47	1.17
6059059--6059128	10	7.0	10	73	25	51	54	0	4	41	1.20
6059420--6060144	68	10.5	70	71	15	408	26	21	18	33	1.96
6059420--6060132	101	6.9	103	88	5	987	26	21	18	33	1.96
6059420--6060142	312	2.3	314	92	3	1203	26	21	18	33	1.96
6059990--6060074	41	2.1	39	85	8	109	31	21	18	28	1.97
6072235--6072898	59	11.2	59	85	5	779	35	4	28	32	1.78
6072235--6072898	177	3.8	176	88	4	903	35	4	28	32	1.78
6072880--6073025	30	4.7	30	81	10	143	34	3	27	34	1.74
6072849--6073025	93	1.9	93	82	8	225	36	3	26	33	1.73
6074939--6075013	6	13.0	6	74	22	63	50	0	4	45	1.20
6074944--6075004	23	2.7	22	82	5	77	50	0	4	44	1.23
6074977--6075032	27	2.0	28	86	3	78	51	5	1	41	1.35
6074944--6075013	17	4.5	17	81	15	89	52	0	4	42	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6076619--6076709	43	2.1	43	82	11	107	62	1	1	35	1.10
6086140--6086185	23	2.0	23	95	0	83	23	39	15	21	1.92
6086677--6086733	23	2.4	23	88	8	80	42	3	0	54	1.17
6086686--6086754	31	2.2	30	85	10	86	46	4	0	49	1.21
6086667--6086753	11	7.9	11	74	17	65	43	3	1	51	1.26
6086677--6086754	6	13.0	6	75	20	74	44	3	0	51	1.19
6087367--6087413	19	2.4	19	73	16	51	44	4	4	46	1.42
6088147--6088191	21	2.1	21	84	8	56	73	0	11	15	1.10
6088634--6088794	29	5.5	29	69	25	115	33	29	2	34	1.71
6088631--6088806	59	3.0	59	84	4	255	32	30	3	33	1.74
6088850--6088909	28	2.1	28	84	6	77	28	28	11	31	1.92
6095928--6096277	57	6.1	58	85	6	462	34	29	2	34	1.69
6095926--6096279	115	3.1	116	84	6	452	34	28	1	34	1.69
6095948--6096277	29	11.4	29	69	22	164	34	29	1	34	1.68
6096260--6096334	38	2.0	38	81	0	87	29	22	8	40	1.82
6098424--6098668	120	2.0	120	99	0	481	40	11	30	18	1.85
6118434--6118465	16	1.9	17	93	6	57	21	0	6	71	1.07
6120559--6120818	91	2.9	87	84	7	310	38	17	10	33	1.84
6120836--6120873	20	1.9	20	88	0	58	28	13	15	42	1.85
6120955--6120997	18	2.4	19	76	11	54	74	2	2	20	1.04
6120935--6120995	27	2.2	27	83	11	79	75	1	3	19	1.03
6121099--6121263	89	1.9	89	83	5	217	38	9	15	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6125836--6125889	27	2.0	28	81	3	65	59	9	11	20	1.59
6125890--6125926	7	5.3	7	86	0	56	29	0	40	29	1.57
6134349--6134381	2	16.5	2	93	0	57	0	45	3	51	1.16
6136007--6136041	3	11.7	3	87	0	52	31	34	0	34	1.58
6137894--6137929	18	1.9	18	88	5	54	63	0	0	36	0.94
6151799--6151953	82	1.9	80	86	2	220	46	2	10	40	1.53
6154437--6154479	20	2.2	20	86	0	59	51	9	20	18	1.74
6163771--6163811	22	1.9	22	90	5	66	48	26	0	24	1.51
6163864--6163897	17	1.9	18	94	5	61	47	14	8	29	1.75
6163957--6164013	24	2.5	23	88	5	80	26	1	3	68	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126