genome.fa.s1.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  78  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23403251--23403288	20	1.9	20	84	10	51	44	2	0	52	1.14
23406493--23406532	17	2.3	18	83	12	57	42	0	0	57	0.98
23411004--23411043	18	2.2	18	86	4	53	65	2	2	30	1.19
23411065--23411099	9	3.8	9	92	3	52	71	2	0	25	1.00
23416884--23417134	125	2.0	125	100	0	502	32	13	19	33	1.91
23424748--23424839	34	2.7	34	89	3	123	45	6	20	27	1.75
23424728--23424855	51	2.5	51	82	3	132	45	7	22	25	1.77
23424729--23424855	17	7.4	17	77	5	105	44	7	22	25	1.78
23424729--23424855	34	3.7	34	82	3	121	44	7	22	25	1.78
23433052--23433081	15	1.9	16	93	6	53	6	40	6	46	1.56
23451064--23451088	13	1.9	13	100	0	50	48	12	16	24	1.79
23459341--23459464	62	2.0	62	90	0	194	36	18	11	33	1.87
23465850--23465889	17	2.4	17	95	0	71	52	7	20	20	1.70
23475320--23475362	22	2.0	22	85	0	59	32	20	6	39	1.80
23475319--23475368	22	2.4	20	78	12	55	36	20	8	36	1.82
23476508--23476563	24	2.3	24	87	6	78	33	23	17	25	1.96
23476651--23476779	46	2.8	48	78	8	131	27	23	9	40	1.85
23483840--23483993	79	1.9	79	84	2	202	24	16	24	35	1.95
23486215--23486256	18	2.4	17	81	18	50	76	0	14	9	1.02
23487237--23487261	12	2.1	12	100	0	50	24	24	28	24	2.00
23498856--23499079	79	2.8	78	82	4	243	24	19	24	31	1.98
23508953--23509007	23	2.4	23	81	0	65	41	21	25	10	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23527575--23527653	29	3.0	27	77	16	69	34	1	2	62	1.17
23527611--23527665	23	2.3	24	87	6	94	38	0	0	61	0.96
23527640--23527679	15	2.5	17	80	19	59	42	0	0	57	0.98
23527649--23527679	14	2.1	15	94	5	55	45	0	0	54	0.99
23532647--23532943	158	1.9	158	84	0	405	29	22	22	24	1.99
23535595--23535640	24	1.9	23	86	8	65	56	6	4	32	1.45
23537699--23537728	15	1.9	16	93	6	53	80	0	3	16	0.85
23543278--23543335	13	4.5	13	72	21	50	74	3	1	20	1.06
23544396--23544441	24	1.9	23	86	8	65	56	6	4	32	1.45
23546009--23546042	15	2.3	15	100	0	68	23	20	44	11	1.84
23548182--23548208	14	1.9	14	100	0	54	44	0	22	33	1.53
23548539--23548592	27	2.0	27	96	0	99	46	1	18	33	1.60
23548579--23548639	16	3.8	17	74	22	51	55	4	8	31	1.50
23549489--23549527	17	2.3	17	86	8	53	56	2	20	20	1.54
23552854--23552893	19	2.0	20	95	4	73	20	0	12	67	1.22
23559251--23559281	16	1.9	16	93	0	53	29	0	0	70	0.87
23559907--23559940	16	2.1	17	88	5	52	41	0	5	52	1.25
23561273--23561332	22	2.6	25	69	15	65	33	1	0	65	1.03
23561273--23561334	24	2.7	24	71	14	67	33	1	0	64	1.03
23563376--23563433	15	3.9	15	77	2	64	24	29	24	22	1.99
23568424--23568454	3	10.3	3	92	0	53	0	29	0	70	0.87
23571419--23571456	18	2.1	19	85	5	51	0	36	10	52	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23581703--23581744	18	2.3	18	91	4	66	7	16	35	40	1.76
23582163--23582321	79	2.0	79	92	0	264	39	18	13	28	1.89
23583325--23583384	26	2.4	25	80	5	75	40	10	5	45	1.60
23583983--23584015	15	2.2	15	100	0	66	48	30	0	21	1.50
23583983--23584026	15	2.6	17	86	13	56	47	29	0	22	1.51
23584229--23584285	21	2.7	21	80	0	69	1	40	21	36	1.63
23589728--23589821	8	11.8	8	74	21	74	54	1	0	44	1.07
23589728--23589807	30	2.6	30	88	11	110	55	1	0	43	1.08
23589726--23589801	22	3.5	20	72	13	71	53	1	0	44	1.08
23589737--23589927	102	1.9	98	82	13	235	50	2	2	44	1.27
23590011--23590923	18	49.6	18	63	18	183	47	6	1	44	1.39
23589897--23590108	111	1.9	110	94	1	372	45	7	2	44	1.43
23590011--23590198	90	2.1	90	98	0	367	46	4	2	46	1.36
23590052--23590198	46	3.2	46	74	11	176	45	5	2	46	1.40
23590098--23590999	112	8.1	112	95	1	1595	47	6	1	44	1.40
23590011--23590234	90	2.5	88	88	5	259	48	4	1	45	1.34
23589868--23590999	553	2.1	528	90	6	1761	46	6	2	44	1.41
23590919--23591027	32	4.3	26	65	28	72	46	7	1	44	1.42
23590910--23591058	76	2.0	76	98	0	289	46	6	2	43	1.44
23592617--23592731	44	2.3	51	74	21	127	27	10	46	14	1.77
23592566--23592712	44	3.3	44	90	0	222	29	9	46	14	1.76
23592714--23592748	18	1.9	18	94	0	61	17	8	54	20	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23593834--23594108	41	6.8	41	83	4	276	20	26	29	23	1.99
23596121--23596191	36	2.0	36	88	5	108	28	9	23	38	1.87
23599266--23599464	109	1.8	108	88	3	301	22	21	21	35	1.96
23600900--23601042	70	2.0	71	97	1	270	23	16	13	46	1.82
23600926--23601070	70	2.1	69	82	7	168	26	15	13	44	1.84
23601670--23601773	26	4.0	26	78	1	102	26	16	20	36	1.93
23609327--23609568	109	2.2	109	89	0	367	22	19	23	35	1.96
23609497--23609562	34	1.9	34	81	0	78	25	18	22	33	1.97
23612859--23612894	9	4.1	9	92	7	65	44	0	0	55	0.99
23612859--23612894	17	2.1	17	94	5	63	44	0	0	55	0.99
23613134--23613168	18	1.9	18	88	0	52	68	11	5	14	1.37
23615462--23615510	26	1.9	26	83	4	64	24	6	12	57	1.58
23615476--23615601	51	2.6	51	80	10	131	33	3	9	53	1.52
23616425--23617779	221	6.2	220	83	6	1569	40	10	12	36	1.78
23616426--23617783	425	3.1	429	83	7	1591	40	10	12	36	1.78
23620722--23620765	16	2.8	16	78	0	52	22	6	20	50	1.72
23625670--23625719	27	1.9	27	84	8	68	56	20	0	24	1.43
23627424--23627470	19	2.5	19	80	16	53	10	21	4	63	1.43
23630938--23631991	216	4.9	212	81	5	1133	39	12	18	29	1.88
23631815--23632175	184	2.0	183	86	2	501	40	11	17	30	1.85
23631991--23635603	216	16.9	214	79	7	2782	39	13	17	28	1.88
23632426--23632813	195	2.0	195	82	3	467	41	12	17	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23632634--23635682	431	7.1	431	83	4	3445	39	13	17	28	1.89
23633438--23633477	21	2.0	20	85	14	55	47	7	15	30	1.72
23632610--23635682	216	14.3	214	81	5	3323	39	13	17	28	1.89
23635690--23641489	215	27.0	216	81	4	6138	40	13	17	28	1.88
23641343--23641685	181	1.9	178	84	3	454	36	15	18	29	1.92
23641521--23651199	216	45.2	216	79	4	9500	40	13	17	28	1.88
23641521--23651199	645	15.1	646	81	4	9858	40	13	17	28	1.88
23646469--23646508	21	2.0	20	85	14	55	47	7	15	30	1.72
23649341--23651199	429	4.3	428	81	5	2029	40	13	17	29	1.87
23651865--23651889	10	2.5	10	100	0	50	32	8	40	20	1.81
23658389--23661659	216	15.3	215	79	6	2991	40	13	17	28	1.87
23659053--23661659	215	12.2	215	78	6	2490	40	13	17	28	1.87
23661667--23666050	215	20.5	215	78	7	4056	40	13	17	28	1.87
23663050--23663243	97	2.0	97	84	2	255	39	14	12	32	1.85
23661667--23666050	426	10.2	428	80	6	4219	40	13	17	28	1.87
23666060--23670221	216	19.4	216	79	7	3740	40	13	17	28	1.87
23666060--23670221	431	9.7	431	78	7	4032	40	13	17	28	1.87
23666881--23667493	196	3.0	199	79	10	550	39	12	18	29	1.88
23668119--23668311	97	2.0	97	80	4	219	37	13	14	34	1.85
23670603--23670653	25	2.0	25	100	0	102	33	27	23	15	1.95
23671459--23671494	18	1.9	19	88	5	56	11	13	0	75	1.06
23677753--23677782	10	3.0	10	100	0	60	20	40	10	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23678796--23678894	39	2.5	39	93	0	171	25	5	16	53	1.63
23680538--23680634	39	2.5	39	91	0	158	24	6	15	53	1.65
23680682--23680744	32	2.0	32	87	0	90	31	6	20	41	1.77
23682067--23682151	39	2.2	39	85	4	118	25	5	16	51	1.67
23682197--23682259	32	2.0	32	87	0	90	33	11	19	36	1.87
23683853--23685186	216	6.2	216	86	3	1778	27	17	14	40	1.88
23685320--23685352	17	1.9	17	88	11	50	27	3	3	66	1.21
23685587--23685702	50	2.3	52	80	5	121	33	16	12	37	1.85
23686857--23689354	215	11.7	216	80	7	2555	27	17	13	41	1.87
23692130--23692162	17	1.9	17	88	11	50	66	6	0	27	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126