genome.fa.s1.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  103  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31191367--31191436	6	12.0	6	83	10	92	48	1	0	50	1.09
31191367--31191425	17	3.5	16	90	9	91	44	1	0	54	1.10
31192153--31192216	28	2.3	29	78	13	71	54	7	4	32	1.50
31192446--31192484	21	1.9	21	84	5	53	58	5	12	23	1.54
31193335--31193376	19	2.2	19	95	0	75	42	21	4	30	1.73
31193352--31193648	30	9.9	30	84	1	364	38	22	4	35	1.73
31193354--31193630	90	3.1	90	89	0	412	38	20	4	35	1.73
31193621--31193817	59	3.4	58	75	4	200	28	29	4	37	1.77
31194793--31194885	27	3.4	27	76	2	89	35	17	24	22	1.95
31201376--31201406	6	5.2	6	96	0	53	29	0	70	0	0.87
31203669--31203729	27	2.3	27	80	5	70	29	8	27	34	1.86
31204543--31204623	37	2.2	37	88	2	117	19	7	28	44	1.78
31204856--31204919	26	2.3	29	81	7	80	34	6	26	32	1.82
31210866--31210914	25	2.0	25	100	0	98	46	4	8	40	1.52
31210873--31210928	25	2.2	25	87	0	76	48	3	12	35	1.58
31212337--31212495	38	4.3	37	71	21	102	54	4	2	38	1.34
31212494--31212529	18	2.0	18	89	10	56	27	5	5	61	1.41
31217430--31217478	15	3.3	15	71	5	55	59	18	0	22	1.38
31217894--31217918	2	12.5	2	100	0	50	52	0	0	48	1.00
31233121--31233488	49	7.5	49	71	10	268	35	18	26	19	1.95
31233120--31233537	98	4.3	98	84	1	516	35	17	27	19	1.94
31233111--31233775	196	3.5	196	80	8	760	35	17	27	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31233105--31233537	49	8.8	49	68	13	185	35	17	27	20	1.94
31233466--31233615	78	1.9	78	83	0	192	36	16	28	18	1.92
31233537--31233716	49	3.7	48	75	8	184	36	19	27	16	1.93
31233368--31233713	176	2.0	176	88	0	512	36	17	27	18	1.94
31233544--31233796	98	2.6	97	87	1	337	35	17	28	18	1.94
31233600--31233752	49	3.1	48	73	10	139	35	18	25	19	1.95
31233945--31234151	101	2.0	100	81	6	238	34	20	19	25	1.96
31233998--31234162	51	3.3	51	66	8	129	36	19	20	24	1.95
31234804--31234837	9	3.6	9	85	14	50	76	11	0	11	1.02
31235857--31235945	29	3.0	29	85	3	124	34	24	3	37	1.72
31235858--31235970	30	3.8	30	82	1	129	32	21	4	41	1.73
31237376--31237443	22	3.1	22	85	4	75	17	17	23	41	1.90
31239221--31239268	23	2.1	24	84	7	64	70	0	0	29	0.87
31239285--31239447	73	2.2	73	97	0	308	56	3	4	35	1.37
31249196--31249252	20	2.7	21	76	13	55	63	0	5	31	1.17
31252342--31252374	3	11.0	3	100	0	66	33	0	0	66	0.92
31260720--31260919	87	2.3	87	92	1	330	40	17	12	30	1.86
31261189--31261226	17	2.2	17	95	0	67	44	2	0	52	1.14
31261528--31261556	14	2.1	14	100	0	58	24	6	13	55	1.63
31261873--31261929	11	5.4	11	77	14	57	61	3	1	33	1.23
31262835--31263085	29	8.6	29	72	8	154	34	23	4	37	1.75
31264056--31264137	42	2.0	42	90	4	130	30	0	21	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31264125--31264156	16	2.0	16	100	0	64	37	0	18	43	1.51
31266371--31266593	29	7.7	29	69	14	122	38	9	22	29	1.86
31266571--31266854	29	9.8	30	80	9	245	35	2	24	37	1.70
31266399--31266598	57	3.5	57	79	13	205	40	8	22	29	1.83
31266399--31266622	58	3.9	57	78	12	217	38	8	21	31	1.83
31266571--31266854	59	4.9	59	78	8	264	35	2	24	37	1.70
31266666--31266854	88	2.1	88	84	5	240	35	2	24	38	1.67
31279276--31279643	155	2.4	156	83	3	465	24	30	19	25	1.98
31279238--31279653	39	10.7	38	69	16	185	24	30	20	25	1.99
31279238--31279659	78	5.4	76	82	4	459	24	30	20	24	1.99
31279533--31279764	127	1.8	127	89	1	367	27	31	18	23	1.97
31280212--31280267	11	4.9	11	78	10	51	39	0	3	57	1.16
31280198--31280287	17	5.2	17	86	4	126	41	1	3	54	1.24
31280205--31280287	6	14.2	6	74	13	75	40	1	3	54	1.26
31280198--31280287	35	2.6	36	84	7	132	41	1	3	54	1.24
31281863--31281953	29	3.1	29	76	9	94	34	24	5	36	1.79
31281936--31282274	29	11.7	29	79	4	243	33	22	5	38	1.77
31281931--31282238	58	5.3	57	78	7	273	32	22	5	39	1.78
31281956--31282268	87	3.6	86	74	9	285	33	21	5	39	1.76
31284275--31284309	7	5.0	7	100	0	70	57	0	0	42	0.99
31287820--31287859	2	20.0	2	94	0	71	0	52	0	47	1.00
31290250--31290277	5	5.6	5	100	0	56	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31295813--31295860	17	2.8	17	87	6	62	58	2	2	37	1.22
31297238--31297284	19	2.5	19	96	0	85	34	27	36	2	1.69
31311441--31311506	33	2.0	33	87	0	96	33	15	10	40	1.81
31312431--31312465	17	2.1	17	100	0	70	20	22	5	51	1.68
31314207--31314237	6	5.2	6	92	0	53	16	12	35	35	1.87
31315215--31315244	14	2.1	15	93	6	53	66	0	0	33	0.92
31315358--31315634	37	7.2	37	75	15	242	26	32	18	22	1.97
31321531--31321711	51	3.5	51	88	0	263	29	12	23	33	1.92
31327793--31328170	188	2.0	188	100	0	756	34	13	18	32	1.90
31330236--31330317	41	2.0	41	97	0	155	21	23	14	40	1.90
31335442--31335489	13	3.5	13	72	10	51	37	0	0	62	0.95
31335434--31335512	28	2.8	29	78	3	97	41	0	0	58	0.98
31336288--31336383	20	4.9	20	71	27	73	47	1	0	51	1.07
31336286--31336374	29	3.1	28	95	4	144	47	0	0	52	1.00
31339319--31339351	15	2.3	15	94	5	59	30	0	0	69	0.88
31345181--31345219	20	2.1	18	85	9	51	20	20	0	58	1.39
31359625--31359744	43	2.9	42	78	12	140	17	15	11	55	1.68
31365435--31365472	19	2.0	19	85	10	51	34	7	7	50	1.61
31365705--31365831	60	2.1	60	82	5	150	44	3	11	40	1.58
31368803--31368854	27	1.9	27	92	0	86	28	11	30	28	1.92
31368841--31368944	31	3.5	30	75	17	99	36	3	26	32	1.75
31368836--31368969	60	2.3	59	84	3	171	35	4	29	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31370783--31370833	17	3.0	17	94	0	84	56	1	1	39	1.22
31370782--31370832	6	8.8	6	80	8	61	54	1	1	41	1.22
31371111--31371464	38	9.7	37	73	16	219	33	16	15	34	1.90
31371111--31371792	76	9.0	76	77	14	491	34	16	14	34	1.90
31371241--31371342	32	3.2	32	62	13	82	34	13	17	34	1.89
31371111--31371792	141	4.5	145	73	18	491	34	16	14	34	1.90
31371235--31371365	65	2.0	65	98	0	253	35	12	16	35	1.86
31371193--31371683	179	2.6	180	81	12	601	34	16	14	34	1.89
31371335--31371765	38	11.0	38	69	18	197	34	17	13	34	1.89
31371533--31371703	39	4.4	38	77	9	168	33	19	12	34	1.89
31371326--31371717	204	1.9	204	90	2	626	33	17	14	34	1.90
31382542--31382646	29	3.6	29	71	14	99	34	3	29	32	1.76
31382511--31382640	59	2.2	59	91	0	206	34	3	29	32	1.76
31382479--31382646	28	5.7	29	69	22	102	33	5	29	30	1.81
31384258--31384316	6	9.8	6	73	14	50	55	1	3	38	1.26
31384273--31384300	14	2.0	14	100	0	56	57	0	7	35	1.26
31384496--31384535	3	13.7	3	89	5	64	30	2	0	67	1.04
31385801--31385845	22	2.0	24	86	8	67	22	15	13	48	1.79
31389728--31389802	6	13.2	6	82	10	77	48	2	0	49	1.15
31389718--31389793	11	6.9	11	79	8	66	44	2	1	51	1.23
31389775--31389823	12	3.8	12	80	17	53	65	4	0	30	1.11
31389728--31389785	17	3.5	17	97	2	109	41	3	0	55	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31390810--31390848	21	1.9	21	84	5	53	58	5	12	23	1.54
31390903--31390931	14	2.0	15	93	6	51	34	24	20	20	1.97
31391711--31392092	30	12.7	30	87	0	523	38	24	2	35	1.68
31404074--31404683	68	9.0	68	86	4	738	33	17	21	28	1.96
31404174--31404683	100	5.0	100	80	9	593	32	17	20	28	1.96
31404074--31404581	168	3.0	170	84	6	735	33	17	21	27	1.96
31405016--31405104	6	15.2	6	80	13	96	46	2	0	51	1.13
31405006--31405093	11	7.6	11	79	13	72	42	2	1	54	1.20
31405016--31405089	17	4.6	16	85	11	107	41	2	0	55	1.14
31405023--31405093	37	1.9	37	88	5	108	42	2	0	54	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126