genome.fa.s1.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  102  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30967044--30967081	19	2.0	19	89	0	58	52	0	0	47	1.00
30967116--30967152	16	2.3	16	86	13	58	40	0	0	59	0.97
30967166--30967215	16	3.2	16	70	18	52	52	0	0	48	1.00
30967279--30967304	9	2.9	9	100	0	52	34	7	0	57	1.27
30968892--30968934	13	3.3	13	81	12	52	41	16	0	41	1.48
30968880--30968941	26	2.4	25	81	7	70	41	17	1	38	1.59
30973293--30973349	15	3.8	15	78	17	64	52	7	14	26	1.66
30973294--30973357	30	2.1	30	85	5	85	50	4	15	29	1.65
30979134--30979182	23	2.2	23	85	3	64	67	2	10	20	1.30
30988569--30988802	26	9.0	26	78	7	190	30	17	26	24	1.97
30993523--30993624	30	3.4	29	64	15	73	28	12	9	49	1.73
30993527--30993674	60	2.5	60	95	0	260	26	14	9	49	1.74
30993882--30993936	21	2.6	21	81	16	69	67	3	0	29	1.08
30994023--30994070	24	2.0	24	91	0	78	58	0	2	39	1.10
31001504--31001581	38	2.1	38	92	0	129	28	14	11	46	1.79
31005885--31006488	307	2.0	307	93	1	1050	30	19	18	30	1.96
31009234--31009287	18	3.1	17	80	20	67	70	0	20	9	1.14
31009230--31009288	15	3.7	15	79	16	64	71	0	20	8	1.12
31009491--31009523	15	2.1	16	88	5	50	45	0	0	54	0.99
31010378--31010418	13	2.9	15	78	10	50	31	9	0	58	1.31
31015265--31015458	23	8.3	23	89	4	273	11	22	23	42	1.85
31015265--31015485	46	4.7	44	82	10	255	11	23	22	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31015265--31015460	71	2.8	69	86	4	286	11	22	22	43	1.85
31015265--31015504	71	3.5	67	85	7	277	11	23	22	42	1.86
31021990--31022061	31	2.3	32	73	9	76	36	9	0	54	1.34
31027440--31027555	57	2.0	57	98	0	223	18	11	25	43	1.83
31033147--31033204	22	2.6	22	73	13	55	39	1	1	56	1.19
31034151--31034368	30	7.3	30	80	7	230	35	4	22	37	1.74
31036230--31036296	6	11.7	6	78	9	77	53	2	0	43	1.16
31036221--31036275	11	4.9	11	79	16	60	52	3	0	43	1.18
31036221--31036303	17	4.9	17	86	0	103	54	3	0	42	1.18
31036666--31036868	38	5.3	39	68	21	151	31	15	16	37	1.89
31036617--31037568	76	12.1	76	77	11	864	32	17	15	34	1.91
31036617--31037568	152	6.0	152	86	8	1280	32	17	15	34	1.91
31036848--31037023	94	1.9	89	88	5	262	31	19	14	34	1.92
31036575--31037568	322	3.1	318	86	8	1353	32	17	15	34	1.91
31037170--31037568	166	2.5	165	87	8	560	33	17	14	34	1.90
31037246--31037417	91	1.9	88	92	3	290	33	18	13	34	1.91
31037094--31037568	242	2.0	241	94	1	844	33	17	14	34	1.90
31049307--31049365	31	1.9	32	86	10	88	40	1	25	32	1.66
31049338--31049678	30	11.4	30	78	6	327	36	4	21	37	1.73
31049345--31049683	60	5.7	59	85	5	380	36	4	21	37	1.73
31049382--31049689	121	2.6	119	85	7	408	37	4	21	37	1.74
31050765--31050813	25	2.0	24	84	11	64	32	4	0	63	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31051519--31051585	6	11.7	6	78	9	77	53	2	0	43	1.16
31051510--31051564	11	4.9	11	79	16	60	52	3	0	43	1.18
31051510--31051592	17	4.9	17	86	0	103	54	3	0	42	1.18
31053353--31053496	72	2.0	72	100	0	288	54	6	9	29	1.59
31055978--31056134	79	2.0	79	84	0	206	38	15	8	36	1.78
31057806--31058059	58	4.4	57	81	11	205	35	2	29	32	1.70
31057845--31057937	28	3.2	28	68	19	75	35	3	31	30	1.74
31057842--31058092	117	2.1	117	83	4	319	35	2	27	33	1.72
31057838--31058091	58	4.3	59	83	5	284	35	2	29	33	1.72
31059957--31059991	18	1.9	18	100	0	70	17	8	17	57	1.64
31072483--31072534	22	2.4	22	96	0	95	50	7	19	23	1.73
31075819--31075868	19	2.7	20	72	12	52	64	0	0	36	0.94
31076196--31076245	22	2.3	22	96	0	91	52	10	18	20	1.73
31076193--31076254	22	2.5	26	70	26	62	56	8	14	20	1.64
31076633--31076686	21	2.7	19	86	11	65	74	3	9	12	1.20
31076748--31076778	14	2.2	14	100	0	62	48	9	6	35	1.62
31094275--31094432	28	5.3	30	69	19	100	24	11	13	50	1.74
31094650--31094742	28	3.1	28	72	15	87	48	6	17	27	1.71
31094601--31094748	62	2.5	61	84	7	196	50	8	16	24	1.72
31110904--31110934	4	7.8	4	100	0	62	0	22	0	77	0.77
31111631--31111678	25	1.9	25	87	8	71	47	0	2	50	1.12
31111713--31111753	18	2.3	18	91	0	64	53	2	2	41	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31112249--31112303	29	1.9	28	85	3	74	54	1	3	40	1.28
31112242--31112309	29	2.4	28	77	5	73	55	1	2	39	1.24
31116756--31116878	38	3.2	38	79	2	156	21	30	22	26	1.99
31116754--31117113	39	9.3	39	71	7	212	22	29	21	25	1.99
31116754--31117135	157	2.5	154	83	2	487	22	30	20	25	1.98
31116754--31117135	78	4.9	78	84	1	462	22	30	20	25	1.98
31119321--31119537	29	7.4	28	76	12	143	32	26	3	38	1.72
31119324--31119490	29	5.7	30	81	9	159	32	25	2	38	1.71
31119324--31119535	59	3.6	59	80	8	193	33	26	3	37	1.73
31123012--31123439	59	7.3	59	87	1	601	34	2	28	34	1.72
31124510--31124554	3	15.0	3	95	0	81	33	2	0	64	1.06
31124553--31124596	3	14.7	3	100	0	88	0	0	31	68	0.90
31125695--31125957	38	6.9	38	70	14	211	34	15	15	34	1.89
31125646--31125957	76	4.1	76	93	2	518	34	15	14	35	1.88
31125914--31126229	92	3.5	90	90	5	482	26	16	19	36	1.94
31133897--31133937	15	2.7	15	88	0	55	4	17	34	43	1.70
31136059--31136359	116	2.6	117	88	1	424	34	29	3	32	1.74
31136056--31136374	59	5.4	59	85	3	421	34	29	3	32	1.73
31136059--31136310	29	8.7	29	67	24	122	34	30	2	32	1.72
31148320--31148967	200	3.2	200	90	1	969	36	20	23	19	1.95
31149325--31149411	17	5.4	17	79	16	87	40	4	1	54	1.29
31149334--31149400	6	11.0	6	73	13	57	40	4	0	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31150108--31150152	18	2.6	18	76	16	51	60	0	2	37	1.09
31150613--31150663	23	2.2	23	83	13	61	56	1	7	33	1.39
31151088--31151438	57	6.1	58	85	7	439	34	29	1	34	1.69
31151085--31151442	115	3.1	117	88	4	530	34	29	1	34	1.69
31151089--31151402	28	10.9	28	66	17	126	33	29	1	35	1.69
31154333--31154358	2	13.0	2	100	0	52	50	0	0	50	1.00
31155936--31155988	21	2.5	21	87	0	79	37	13	9	39	1.77
31155936--31155998	21	3.0	20	77	9	56	36	12	9	41	1.76
31157762--31157809	23	2.1	23	92	0	78	27	18	25	29	1.98
31158648--31158681	17	2.0	17	88	0	50	23	5	5	64	1.38
31161084--31161185	22	4.5	22	88	3	123	14	22	27	35	1.93
31161084--31161185	45	2.3	45	82	3	125	14	22	27	35	1.93
31167153--31167194	2	21.0	2	95	0	75	47	0	2	50	1.14
31167142--31167196	12	4.4	12	90	4	74	41	1	5	50	1.36
31167609--31167649	21	2.0	21	85	0	55	46	24	2	26	1.65
31168470--31168503	17	2.1	16	88	5	50	70	0	5	23	1.09
31176122--31176210	6	15.2	6	78	13	96	43	2	1	52	1.20
31176122--31176210	17	5.4	16	80	12	101	43	2	1	52	1.20
31176129--31176202	37	2.0	37	86	5	105	41	2	1	54	1.23
31176834--31176876	12	3.8	12	81	12	63	34	2	6	55	1.39
31176829--31176874	22	2.1	22	100	0	92	32	4	8	54	1.51
31176957--31177020	28	2.3	29	78	13	71	54	7	4	32	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31177251--31177289	21	1.9	21	84	5	53	58	5	12	23	1.54
31177978--31178007	10	3.0	10	100	0	60	30	0	0	70	0.88
31178158--31178451	30	9.8	30	82	4	335	37	21	4	37	1.73
31178424--31178620	59	3.4	56	75	8	189	29	29	4	37	1.76
31190379--31190674	68	4.2	70	90	3	379	34	16	20	28	1.95
31190549--31190953	100	4.0	99	74	12	376	33	17	20	28	1.96
31190623--31190685	32	2.2	27	83	16	74	31	19	22	26	1.97
31190649--31191034	68	5.5	68	87	5	522	32	17	20	29	1.96
31190490--31190841	168	2.1	168	97	0	661	32	18	21	27	1.96
31190450--31190909	236	2.0	235	94	0	803	33	17	20	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126