genome.fa.s1.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  125  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37443356--37443386	16	2.0	15	93	6	53	9	0	25	64	1.24
37449007--37449236	114	2.0	118	83	6	299	38	7	32	21	1.82
37451358--37451428	28	2.5	28	78	13	74	25	14	9	50	1.73
37452444--37452531	33	2.7	33	94	0	149	31	37	17	13	1.88
37460655--37460701	15	3.2	15	71	17	53	61	4	0	34	1.15
37460952--37461001	25	2.0	26	88	4	75	62	2	6	30	1.31
37462525--37462560	13	2.9	12	84	8	54	2	25	5	66	1.27
37466441--37466499	26	2.4	24	86	8	75	5	18	3	72	1.17
37470056--37470084	13	2.3	13	94	5	51	44	0	0	55	0.99
37470253--37470309	30	1.9	30	85	7	80	63	1	10	24	1.36
37470470--37470497	2	14.0	2	100	0	56	50	0	0	50	1.00
37473053--37473096	18	2.4	18	85	11	54	22	2	4	70	1.17
37474156--37474196	21	2.0	20	85	4	55	31	7	7	53	1.56
37477417--37478007	148	4.0	148	86	4	798	35	20	12	31	1.90
37484626--37484689	31	2.1	29	86	11	85	40	10	10	37	1.76
37488505--37488589	39	2.1	42	93	6	149	18	27	15	38	1.91
37494865--37495211	141	2.5	142	98	0	678	36	24	17	22	1.95
37504423--37504472	23	2.2	23	82	7	57	38	2	32	28	1.68
37504919--37504975	26	2.2	26	81	9	62	38	0	0	61	0.96
37506116--37506153	16	2.4	16	84	16	53	36	0	0	63	0.95
37507884--37508105	115	1.9	115	92	0	372	20	7	25	46	1.77
37518965--37519139	87	2.0	87	98	0	341	36	16	22	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37521308--37521343	17	2.1	18	90	10	58	47	2	5	44	1.41
37539293--37539340	21	2.3	21	82	7	62	58	0	0	41	0.98
37542964--37543049	37	2.2	40	89	6	133	40	1	4	53	1.29
37549139--37549201	29	2.1	30	82	11	76	57	3	3	36	1.31
37566724--37566783	30	2.0	30	96	0	111	35	31	13	20	1.91
37574117--37574164	16	3.0	16	78	0	51	35	10	10	43	1.73
37576229--37576277	24	2.1	24	84	3	64	67	6	2	24	1.24
37583471--37584459	376	2.6	373	90	2	1507	42	26	10	20	1.85
37585798--37586161	94	3.7	97	85	6	470	25	5	19	49	1.70
37585798--37586183	193	2.0	199	86	6	556	25	5	19	49	1.70
37597280--37597305	6	4.3	6	100	0	52	19	15	34	30	1.93
37597586--37597633	21	2.3	21	81	0	69	35	18	16	29	1.93
37614443--37614474	16	1.9	17	93	6	57	71	0	0	28	0.86
37629264--37629297	16	2.1	17	88	5	52	67	14	0	17	1.23
37629520--37629563	21	2.1	21	82	0	52	47	13	4	34	1.63
37631364--37631460	47	2.1	47	84	3	124	37	11	9	42	1.73
37636326--37636380	29	1.9	28	88	3	83	36	1	9	52	1.44
37648245--37648304	26	2.2	26	80	11	68	26	11	30	31	1.92
37648100--37648361	144	1.8	144	84	6	359	35	8	22	32	1.85
37648416--37648539	28	4.2	29	72	16	85	37	4	22	35	1.73
37648463--37648539	31	2.5	31	79	8	86	42	2	19	35	1.65
37661235--37661374	63	2.3	63	88	2	212	36	20	13	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37671603--37671640	18	2.1	18	85	9	51	60	0	0	39	0.97
37672419--37672464	23	2.0	23	86	0	65	23	8	13	54	1.66
37683468--37683526	31	1.9	32	86	6	86	45	1	3	49	1.28
37685481--37685768	108	2.7	107	89	1	423	45	14	10	29	1.79
37709384--37709456	24	3.1	24	82	2	85	30	10	5	53	1.58
37709396--37709463	24	2.8	24	81	0	73	29	10	4	55	1.52
37711183--37711257	24	3.1	24	84	0	96	26	9	6	57	1.55
37712793--37712842	26	1.9	26	87	0	73	62	2	4	32	1.25
37712773--37712844	26	3.0	23	71	13	63	62	2	4	30	1.28
37717186--37717236	18	3.0	16	81	13	57	45	3	7	43	1.51
37717185--37717248	16	3.9	15	75	22	58	45	3	9	42	1.52
37718193--37718220	4	7.0	4	100	0	56	25	0	50	25	1.50
37728352--37728447	27	3.6	27	92	2	158	52	0	1	46	1.07
37735239--37735819	198	3.0	195	90	3	862	38	18	17	25	1.92
37739954--37739979	8	3.2	8	100	0	52	38	11	50	0	1.39
37742373--37742401	1	29.0	1	100	0	58	0	0	0	100	0.00
37742858--37742930	37	2.0	36	81	10	85	39	9	5	45	1.60
37743525--37743555	16	1.9	16	93	0	53	22	58	6	12	1.58
37745118--37745294	30	5.9	30	83	4	196	38	22	4	33	1.75
37745304--37745400	28	3.3	30	69	22	78	32	28	1	37	1.64
37745268--37745405	58	2.3	58	90	2	204	32	31	0	34	1.63
37748863--37749040	73	2.4	73	95	0	311	32	27	17	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37752205--37752242	18	2.1	18	85	9	51	26	0	5	68	1.11
37759695--37759724	15	2.0	15	93	0	51	73	10	0	16	1.09
37782033--37782068	18	2.0	18	100	0	72	33	27	11	27	1.91
37782550--37782631	31	2.7	30	79	7	87	43	1	1	53	1.16
37791447--37791498	26	2.0	26	100	0	104	11	30	19	38	1.87
37792499--37792529	16	1.9	16	100	0	62	51	9	0	38	1.35
37795812--37795863	27	1.9	27	84	0	68	25	9	23	42	1.84
37813668--37813708	22	1.9	22	85	5	57	43	0	2	53	1.13
37814937--37815827	287	3.1	288	92	1	1407	41	20	12	25	1.88
37821457--37821521	31	2.1	31	100	0	130	27	27	15	29	1.96
37826077--37826106	14	2.1	14	100	0	60	46	0	0	53	1.00
37826900--37826929	15	2.0	15	100	0	60	20	73	0	6	1.05
37830374--37830458	37	2.2	38	82	14	95	57	5	0	36	1.23
37832784--37832834	23	2.3	23	79	3	59	50	1	1	45	1.24
37848336--37848447	17	6.8	17	80	12	117	41	1	1	55	1.21
37848337--37848447	6	19.0	6	72	18	83	41	1	1	54	1.21
37848337--37848447	11	10.0	11	70	23	74	41	1	1	54	1.21
37850422--37850726	30	10.2	29	78	8	224	38	23	3	35	1.71
37850436--37850717	60	4.7	59	80	6	286	37	22	3	35	1.72
37850436--37850718	90	3.2	88	81	7	313	38	22	3	35	1.72
37850704--37850892	58	3.2	56	87	6	261	33	30	1	34	1.67
37850704--37850852	30	5.1	30	65	15	96	34	30	1	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37850769--37850861	28	3.3	27	69	18	80	30	33	1	35	1.65
37860494--37860532	21	2.0	20	85	10	53	30	2	7	58	1.39
37863254--37863313	8	7.4	8	81	3	75	13	1	35	50	1.52
37870321--37870363	2	22.0	2	88	4	61	51	0	48	0	1.00
37886516--37886550	16	2.2	16	89	0	52	28	0	0	71	0.86
37893331--37893372	19	2.2	19	83	8	50	57	11	7	23	1.59
37904798--37904832	17	1.9	19	88	11	56	40	0	5	54	1.24
37904813--37904901	36	2.5	34	74	18	83	50	1	2	46	1.21
37907232--37907263	10	3.4	10	87	12	50	0	15	0	84	0.63
37907230--37907273	17	2.5	18	85	3	63	0	22	2	75	0.92
37907726--37907819	21	4.1	22	78	18	111	42	30	1	25	1.62
37907918--37907965	13	3.6	13	85	2	60	14	20	22	41	1.89
37909013--37909045	3	11.3	3	87	6	50	30	3	0	66	1.06
37921415--37921441	2	13.5	2	100	0	54	48	0	0	51	1.00
37922625--37922667	19	2.3	19	79	0	50	44	2	2	51	1.27
37927801--37927847	22	2.2	21	84	3	58	70	2	8	19	1.24
37929167--37929194	14	2.0	14	100	0	56	35	14	7	42	1.73
37929992--37930052	2	30.5	2	93	0	104	0	3	49	47	1.18
37965327--37965393	33	2.0	34	85	8	93	20	32	11	34	1.90
37973309--37973342	17	2.0	17	94	0	59	20	0	17	61	1.34
37974317--37974381	32	2.0	32	100	0	130	52	3	12	32	1.54
37984180--37984234	28	1.9	29	88	3	85	36	5	9	49	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37986915--37986939	12	2.1	12	100	0	50	24	0	32	44	1.54
37989503--37989533	11	2.8	11	95	0	53	0	0	12	87	0.55
37992375--37992426	25	2.1	25	100	0	104	40	19	11	28	1.86
38006804--38006863	2	30.0	2	100	0	120	50	0	0	50	1.00
38017786--38017820	7	5.0	7	85	0	52	45	25	14	14	1.82
38033922--38033952	6	5.2	6	100	0	62	35	0	48	16	1.46
38035040--38035068	5	5.8	5	100	0	58	37	41	0	20	1.53
38042692--38042754	2	31.5	2	84	6	83	52	1	1	44	1.20
38049137--38049185	19	2.6	18	81	9	53	61	4	2	32	1.26
38049787--38049813	6	4.5	6	100	0	54	14	0	51	33	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126