genome.fa.s1.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  92  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28400648--28400688	17	2.3	18	87	4	57	46	0	9	43	1.36
28408175--28408244	21	3.3	20	78	7	77	5	7	20	67	1.36
28408174--28408292	43	2.7	44	76	14	129	6	5	19	68	1.34
28408263--28408306	12	3.7	12	90	0	70	9	4	15	70	1.30
28409105--28409188	3	29.3	3	84	11	70	61	0	38	0	0.96
28409330--28409355	12	2.2	12	100	0	52	34	0	23	42	1.54
28411809--28411856	23	2.1	23	88	3	71	70	0	4	25	1.04
28411873--28411914	21	2.1	20	86	8	59	42	0	2	54	1.13
28412321--28412354	15	2.3	15	89	0	50	35	8	0	55	1.31
28412826--28412867	17	2.5	16	85	11	57	42	16	0	40	1.48
28413189--28413251	24	2.6	24	78	9	65	33	17	9	39	1.82
28416756--28416813	23	2.5	24	78	8	68	36	0	0	63	0.94
28416926--28416961	18	2.0	18	88	0	54	61	5	2	30	1.33
28417432--28417468	16	2.3	17	86	9	51	48	8	5	37	1.56
28421120--28421394	71	3.9	71	84	3	358	34	24	17	23	1.96
28424840--28424886	23	2.1	22	88	11	69	2	19	10	68	1.30
28425602--28426266	49	13.6	49	70	6	382	19	26	18	35	1.95
28425602--28426270	98	6.8	98	90	0	982	19	26	18	35	1.95
28434080--28434123	23	1.9	23	81	9	54	38	13	27	20	1.90
28438464--28438506	19	2.3	19	95	0	77	30	34	6	27	1.83
28438908--28438941	17	1.9	18	88	5	52	26	2	2	67	1.19
28441190--28441260	17	4.2	17	77	0	79	39	4	4	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28441184--28441250	34	2.0	34	90	0	107	32	4	7	55	1.48
28441294--28441367	29	2.6	29	86	4	96	41	32	4	21	1.72
28441363--28441414	26	2.0	26	92	0	86	48	32	11	7	1.68
28441981--28442015	9	3.9	9	88	0	52	57	8	0	34	1.29
28443223--28443316	29	3.2	29	82	5	102	32	27	7	31	1.85
28443836--28444073	119	2.0	119	98	0	458	35	19	15	28	1.93
28446172--28446217	24	1.9	24	86	8	67	54	0	6	39	1.26
28452783--28452834	27	2.0	26	92	3	86	40	0	38	21	1.53
28461363--28461490	64	2.0	64	98	0	247	25	9	24	40	1.85
28461581--28461691	23	4.8	23	84	2	125	37	5	11	45	1.64
28464369--28464447	2	39.5	2	100	0	158	50	0	0	49	1.00
28465988--28466032	23	2.0	23	82	8	56	42	20	6	31	1.77
28474179--28474298	58	2.1	58	90	3	188	48	18	0	33	1.48
28476330--28476363	5	7.0	5	93	6	61	38	0	0	61	0.96
28482947--28483004	30	1.9	31	89	3	91	32	1	12	53	1.48
28482946--28483012	30	2.2	30	83	2	89	31	1	11	55	1.45
28483271--28483321	9	5.3	9	77	13	57	58	1	1	37	1.20
28483270--28483332	29	2.2	28	77	11	65	60	1	1	36	1.16
28483553--28483612	29	2.1	29	84	12	79	51	1	1	45	1.21
28484382--28484461	33	2.5	33	81	2	90	32	28	26	12	1.93
28484572--28484629	21	2.8	21	82	10	66	39	15	22	22	1.91
28494963--28494997	14	2.4	15	85	9	54	68	11	2	17	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28527015--28527044	6	5.0	6	91	0	51	83	3	13	0	0.77
28527581--28527614	16	2.2	15	94	5	59	70	0	2	26	1.01
28529042--28529066	4	6.2	4	100	0	50	76	0	0	24	0.80
28550760--28550800	20	2.0	22	90	9	68	48	0	0	51	1.00
28550762--28550829	27	2.4	27	88	9	93	50	0	1	48	1.10
28550848--28550885	12	3.2	12	92	0	58	15	31	0	52	1.43
28550852--28550892	12	3.4	12	89	0	55	14	31	0	53	1.41
28551712--28551810	28	3.5	28	82	12	130	47	0	2	50	1.12
28565605--28565641	18	2.1	18	89	0	56	24	27	0	48	1.51
28572703--28572737	6	5.7	6	89	3	52	68	11	2	17	1.31
28572682--28572793	47	2.4	46	80	5	109	58	16	4	21	1.56
28573096--28573163	31	2.2	31	87	7	95	26	14	14	44	1.84
28574710--28574762	26	2.0	26	100	0	106	30	22	13	33	1.92
28582478--28582510	13	2.5	13	95	0	57	30	12	18	39	1.87
28584194--28584233	21	2.0	21	90	5	64	65	7	10	17	1.46
28598600--28598634	18	1.9	18	88	0	52	45	0	0	54	0.99
28598581--28598639	21	2.8	20	79	10	64	49	0	0	50	1.00
28600481--28600529	24	2.2	23	82	10	57	18	8	6	67	1.37
28608845--28608881	16	2.2	18	85	9	51	48	0	0	51	1.00
28608850--28608894	14	2.9	16	84	12	51	55	0	0	44	0.99
28610217--28610244	13	2.2	13	100	0	56	28	0	14	57	1.38
28610318--28610364	25	2.0	23	87	8	67	29	2	8	59	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28613831--28613856	9	2.9	9	100	0	52	19	0	0	80	0.71
28614617--28614818	105	1.9	105	87	2	298	31	10	25	31	1.90
28618925--28618958	2	17.5	2	93	6	61	50	0	0	50	1.00
28627855--28627947	21	4.4	21	83	5	116	25	3	24	46	1.68
28628079--28628208	46	2.8	47	83	3	138	40	7	23	28	1.82
28628274--28628355	25	3.4	25	86	6	107	29	15	20	34	1.94
28630610--28630685	26	2.7	28	77	15	86	50	0	1	48	1.09
28631624--28631665	20	2.0	22	90	9	70	52	0	0	47	1.00
28631590--28631662	29	2.4	31	93	4	123	46	1	0	52	1.09
28636141--28636201	28	2.2	28	85	5	79	19	11	26	42	1.85
28644185--28644227	9	4.9	9	80	5	52	48	0	0	51	1.00
28644197--28644242	21	2.2	22	77	18	53	43	2	0	54	1.12
28644203--28644243	21	2.0	21	85	9	57	46	2	0	51	1.14
28644277--28644317	21	1.9	22	90	5	66	39	0	4	56	1.21
28648497--28648572	29	2.7	28	73	4	73	59	3	19	17	1.53
28653778--28653821	18	2.4	19	84	3	54	40	2	2	54	1.25
28653788--28653878	44	2.0	44	83	6	112	38	7	3	50	1.47
28654097--28654142	22	2.1	22	83	0	56	50	0	8	41	1.33
28655575--28655610	5	7.2	5	87	0	54	38	2	2	55	1.29
28655987--28656105	63	1.9	62	84	3	159	52	5	8	33	1.53
28658990--28659029	21	1.9	21	84	0	53	30	10	15	45	1.78
28660281--28660335	28	2.0	28	89	7	85	38	9	21	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28661691--28661897	106	2.0	106	85	3	283	33	21	19	24	1.97
28668385--28668436	26	2.0	27	81	11	63	46	23	0	30	1.53
28669140--28669345	106	1.9	106	85	5	283	34	23	17	24	1.96
28674157--28674254	43	2.3	43	90	0	160	21	23	31	23	1.98
28674194--28674473	132	2.1	132	89	0	436	28	26	23	21	1.99
28678779--28678813	16	2.2	16	94	0	61	80	8	0	11	0.92
28680504--28681061	218	2.6	216	85	5	701	34	11	13	40	1.81
28686140--28686414	45	6.1	45	82	2	345	33	25	15	25	1.95
28686144--28686413	135	2.0	136	87	0	389	33	25	15	25	1.95
28686835--28686870	17	2.1	17	89	0	54	80	11	0	8	0.90
28686833--28686875	22	2.0	22	85	0	59	79	11	0	9	0.95
28688474--28688527	26	2.0	27	96	3	101	18	5	7	68	1.33
28688584--28689145	221	2.6	217	84	5	691	33	12	13	40	1.81
28689042--28689249	109	1.9	110	84	4	276	28	13	17	40	1.87
28689552--28690156	157	3.8	157	91	0	958	31	26	21	20	1.98
28689552--28690148	315	1.9	315	91	1	991	31	26	21	20	1.98
28694796--28694906	31	3.7	29	77	8	96	35	8	14	42	1.75
28695258--28695285	3	9.3	3	100	0	56	32	0	0	67	0.91
28696185--28696209	12	2.1	12	100	0	50	68	8	0	24	1.16
28710551--28710596	23	2.0	22	83	4	56	43	2	13	41	1.55
28710818--28710880	21	3.0	21	88	0	99	44	23	7	23	1.80
28713190--28713238	19	2.6	19	83	0	62	12	8	10	69	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28722765--28722802	4	9.2	4	83	16	51	73	0	0	26	0.83
28722838--28722885	25	1.9	25	91	0	78	39	47	4	8	1.53
28723962--28724114	30	5.2	30	81	7	179	36	17	5	39	1.74
28724059--28724185	30	4.3	30	83	10	163	37	23	3	34	1.74
28724059--28724185	59	2.1	60	87	7	179	37	23	3	34	1.74
28729984--28730075	39	2.4	37	80	10	89	28	27	22	21	1.99
28742734--28742906	86	2.0	86	93	0	292	30	21	17	30	1.96
28748980--28749133	30	5.2	30	78	3	125	35	18	6	38	1.77
28749008--28749133	30	4.2	30	79	2	146	37	18	6	38	1.76
28749009--28749130	59	2.1	59	84	6	158	36	18	6	37	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126