genome.fa.s1.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  58  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16982662--16982707	10	4.6	10	76	17	51	80	0	19	0	0.71
16983668--16983984	50	6.4	49	71	7	183	33	16	31	18	1.93
16983558--16984040	100	4.9	100	80	4	462	34	16	31	17	1.93
16983953--16984047	49	1.9	49	83	8	122	33	17	30	17	1.94
16984183--16984443	42	6.4	42	87	6	367	29	28	16	25	1.97
16985677--16985702	3	8.7	3	100	0	52	69	0	0	30	0.89
16986449--16986509	29	2.0	30	87	6	88	21	18	3	57	1.54
16988089--16988164	27	2.8	27	84	4	91	23	31	22	22	1.98
16988332--16988375	16	2.8	16	93	3	72	31	15	0	52	1.44
16989359--16989411	15	3.0	18	70	30	51	50	1	0	47	1.12
17001845--17001948	37	2.7	38	76	5	93	32	26	18	22	1.97
17002051--17002089	6	6.5	6	87	0	51	23	30	0	46	1.53
17003783--17003869	42	2.1	42	82	0	102	28	26	16	28	1.97
17026224--17026427	101	2.0	102	99	0	401	49	10	11	28	1.73
17027285--17027441	38	4.2	38	84	4	201	34	15	3	47	1.61
17027296--17027441	75	1.9	77	88	2	224	32	16	3	47	1.63
17027786--17027833	24	2.0	24	84	8	62	29	2	4	64	1.23
17029592--17029626	15	2.3	16	90	9	56	28	2	0	68	1.04
17030293--17030334	17	2.4	18	88	4	59	54	0	2	42	1.13
17032357--17032389	17	2.0	17	88	5	50	48	0	0	51	1.00
17036149--17036189	20	2.1	20	90	4	66	12	68	9	9	1.40
17036199--17036235	17	2.2	17	90	9	58	64	5	0	29	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17036308--17036348	22	2.0	21	90	9	66	46	0	0	53	1.00
17036308--17036359	22	2.5	20	81	9	50	44	1	0	53	1.11
17037153--17037197	20	2.2	20	92	0	72	35	13	8	42	1.75
17040248--17040314	20	3.3	20	93	0	116	49	34	1	14	1.53
17040243--17040272	15	2.0	15	100	0	60	46	33	0	20	1.51
17040289--17040323	14	2.4	15	90	4	54	48	31	5	14	1.67
17040365--17040425	27	2.3	27	88	0	95	19	19	22	37	1.94
17040365--17040456	13	7.0	13	69	16	55	18	21	22	36	1.95
17041499--17041529	3	10.3	3	100	0	62	32	0	0	67	0.91
17047471--17047557	20	4.2	20	78	10	86	45	34	1	18	1.57
17047598--17047637	20	2.0	21	90	5	64	12	22	35	30	1.91
17047644--17047697	7	7.9	7	79	4	56	18	25	24	31	1.97
17047630--17047700	20	3.5	20	75	7	72	18	22	22	36	1.95
17048741--17048785	3	15.0	3	100	0	90	33	0	0	66	0.92
17049934--17050000	25	2.7	25	86	9	100	41	8	17	31	1.81
17059298--17059472	18	9.6	18	81	3	181	20	20	27	32	1.97
17059298--17059454	54	2.9	54	86	2	208	19	20	26	33	1.96
17059312--17059500	18	10.3	19	84	0	104	22	20	28	28	1.98
17061646--17061707	26	2.4	26	88	0	97	20	33	27	17	1.96
17065618--17065669	24	2.2	24	86	6	70	59	3	0	36	1.16
17065829--17065889	19	3.3	19	72	21	65	39	18	4	37	1.72
17065841--17065897	16	3.2	16	71	21	51	38	19	7	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17065826--17065897	37	1.9	37	97	0	135	37	19	5	37	1.75
17067292--17067435	73	2.0	73	95	0	261	48	9	13	27	1.74
17067840--17067890	10	5.1	10	77	15	52	56	1	3	37	1.29
17072292--17072337	20	2.3	20	85	7	58	52	2	15	30	1.55
17074165--17074216	21	2.5	20	84	12	61	32	9	28	28	1.89
17077673--17077728	21	2.7	21	77	0	58	30	16	19	33	1.94
17080075--17080316	41	5.9	41	81	8	224	38	10	26	24	1.88
17086966--17087013	22	2.2	22	88	3	71	41	8	8	41	1.65
17102106--17102135	16	1.9	16	93	6	53	60	0	26	13	1.34
17102707--17102775	36	2.0	36	91	5	115	28	21	5	43	1.76
17120998--17121123	40	3.2	40	84	4	139	30	17	23	28	1.97
17124699--17124773	24	3.1	24	92	0	123	56	8	10	25	1.61
17126616--17126705	27	3.3	27	90	0	135	33	13	26	26	1.93
17132307--17132368	31	2.0	31	100	0	124	19	35	0	45	1.51
17133502--17133709	73	2.8	73	79	0	236	32	17	24	25	1.97
17146978--17147052	36	2.1	37	85	7	100	33	9	13	44	1.76
17147527--17147587	20	3.0	21	78	9	63	50	11	8	29	1.67
17158846--17159059	52	4.2	50	82	7	234	34	23	15	26	1.95
17160642--17160668	13	2.1	13	100	0	54	25	22	44	7	1.79
17169986--17170026	18	2.2	19	95	4	75	51	12	14	21	1.75
17172294--17172329	3	12.0	3	100	0	72	0	33	0	66	0.92
17172640--17172688	22	2.3	21	86	10	64	2	38	0	59	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17172640--17172688	10	4.5	12	78	19	54	2	38	0	59	1.09
17174521--17174559	21	1.9	21	89	5	62	66	7	12	12	1.43
17178246--17178291	14	3.5	14	74	17	53	39	26	17	17	1.91
17178252--17178295	12	3.6	12	77	17	54	40	22	22	13	1.89
17180577--17180606	14	2.2	14	94	5	53	36	10	20	33	1.86
17184855--17184891	18	2.0	19	89	5	58	29	13	13	43	1.82
17195063--17195113	24	2.1	24	100	0	102	58	3	11	25	1.50
17196062--17196101	17	2.4	17	86	0	53	47	10	22	20	1.79
17200468--17200554	38	2.3	37	82	9	104	35	20	11	32	1.89
17212558--17212624	35	1.9	35	100	0	134	28	14	22	34	1.94
17223095--17223129	13	2.8	12	87	12	52	82	0	17	0	0.66
17251670--17251699	4	7.5	4	100	0	60	23	0	0	76	0.78
17255447--17255486	20	2.1	18	86	9	53	7	10	7	75	1.20
17255848--17255925	41	1.9	41	89	0	120	32	24	16	26	1.96
17257390--17257428	19	2.0	20	85	14	55	20	0	2	76	0.90
17262288--17262417	69	1.9	69	98	0	251	31	19	14	34	1.92
17271725--17272010	26	11.0	26	83	0	320	26	30	15	27	1.96
17271750--17272010	52	5.0	52	87	0	360	26	29	15	27	1.96
17277863--17277956	38	2.5	38	79	8	104	28	25	14	30	1.95
17277951--17278003	26	2.0	26	88	0	79	28	20	24	26	1.99
17281197--17281237	17	2.4	17	83	0	55	21	19	12	46	1.82
17286142--17286182	21	2.0	21	85	0	55	2	12	2	82	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17294498--17294576	21	3.8	21	89	0	113	36	21	12	29	1.90
17294496--17294587	42	2.2	42	80	0	103	34	23	10	30	1.89
17295290--17295359	24	2.8	25	82	6	81	31	28	18	21	1.97
17301763--17301857	47	2.0	47	100	0	190	41	10	21	27	1.85
17304356--17304394	20	2.0	20	100	0	78	23	25	0	51	1.49
17306513--17306547	17	2.1	17	100	0	70	5	5	17	71	1.25
17306783--17306811	14	2.1	14	93	6	51	34	0	0	65	0.93
17307632--17307672	17	2.4	17	84	12	57	39	9	2	48	1.49
17310253--17310388	40	3.4	40	78	7	143	35	20	18	25	1.95
17314856--17314880	11	2.3	11	100	0	50	60	16	8	16	1.58
17315029--17315066	19	2.0	19	90	10	60	73	5	2	18	1.14
17315724--17315897	60	2.9	59	81	4	197	31	25	6	36	1.82
17315761--17315957	30	6.5	31	79	5	142	32	25	4	37	1.76
17315761--17315957	60	3.3	60	83	5	211	32	25	4	37	1.76
17315821--17315957	30	4.5	30	86	3	177	35	25	2	37	1.68
17325352--17325404	21	2.6	19	77	16	61	30	13	24	32	1.93
17332762--17332814	12	4.2	12	75	13	52	1	35	0	62	1.06
17342040--17342195	85	1.9	81	88	5	231	39	14	23	22	1.90
17342115--17342206	48	1.9	48	88	0	139	38	17	22	21	1.93
17342650--17342756	53	2.0	53	98	0	205	28	28	16	26	1.97
17342824--17343030	30	6.9	30	74	9	156	32	26	3	36	1.75
17342808--17342986	90	2.0	91	81	6	213	33	24	3	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17342834--17342963	29	4.3	32	77	9	114	36	23	3	36	1.71
17345981--17346006	13	2.0	13	100	0	52	30	38	0	30	1.58
17346286--17346377	48	1.9	48	88	0	139	38	14	23	23	1.92
17346111--17346489	209	1.8	210	85	5	543	37	15	24	22	1.93
17348479--17348633	59	2.6	59	79	7	163	31	25	7	35	1.84
17348463--17348760	30	10.0	30	73	7	223	33	25	5	35	1.80
17351792--17351838	17	2.8	17	76	20	53	55	2	2	40	1.24
17352116--17352369	123	2.1	122	97	1	483	38	0	35	25	1.62
17352501--17352536	18	1.9	19	88	5	56	36	16	16	30	1.91
17353718--17353752	17	2.1	17	89	5	54	40	11	14	34	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126