genome.fa.s1.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  68  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19793541--19793634	10	8.5	10	72	22	64	36	4	21	38	1.73
19793518--19793679	58	2.8	58	85	4	195	33	6	20	38	1.78
19798228--19798270	17	2.5	17	88	0	59	16	11	16	55	1.68
19799384--19799433	25	1.9	25	84	8	64	44	22	16	18	1.87
19807102--19807157	26	2.2	26	90	0	85	14	23	30	32	1.94
19812886--19812932	24	2.0	23	84	12	60	55	6	12	25	1.61
19813935--19813974	19	2.1	19	95	0	71	20	17	27	35	1.95
19814493--19814547	10	5.5	10	72	23	53	3	18	1	76	1.02
19824598--19824640	15	2.8	16	92	7	79	32	32	0	34	1.58
19838506--19838562	21	2.7	21	97	0	105	24	12	8	54	1.65
19838670--19838727	26	2.2	26	87	0	80	27	13	24	34	1.93
19847417--19847478	17	3.6	17	80	2	70	20	12	14	51	1.75
19853088--19853178	38	2.4	38	88	0	128	26	36	17	19	1.94
19854253--19854286	14	2.4	14	95	0	59	32	20	5	41	1.76
19856255--19856294	20	2.1	19	85	4	53	50	17	7	25	1.72
19858208--19858263	19	2.9	19	81	0	58	37	33	7	21	1.81
19862930--19862960	16	1.9	16	93	0	53	38	6	6	48	1.55
19863614--19863643	15	2.0	15	93	0	51	43	6	3	46	1.46
19867150--19867201	16	3.5	15	78	19	56	75	0	0	25	0.81
19867483--19867795	156	2.0	157	99	0	619	44	10	7	37	1.68
19873298--19873333	16	2.2	16	90	0	54	25	5	16	52	1.65
19884892--19884925	3	11.3	3	93	0	59	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19885922--19886218	30	10.1	30	70	16	149	36	23	3	36	1.72
19885939--19886236	58	5.1	58	77	8	250	37	24	3	34	1.73
19885981--19886131	59	2.6	60	82	6	184	35	24	3	36	1.74
19885921--19886224	29	10.4	29	73	6	175	36	25	3	35	1.72
19886320--19886392	28	2.6	28	84	6	76	28	28	12	30	1.93
19886667--19886707	20	2.0	20	100	0	82	53	12	9	24	1.68
19891797--19891907	24	4.6	24	85	9	156	81	0	18	0	0.68
19891802--19891902	27	3.8	26	77	16	109	82	0	17	0	0.68
19891795--19891907	38	2.9	40	80	16	139	81	0	18	0	0.69
19891792--19891905	46	2.6	42	82	13	131	81	0	18	0	0.69
19891793--19891906	56	2.1	55	83	11	144	81	0	18	0	0.69
19891797--19891907	32	3.5	30	81	14	134	81	0	18	0	0.68
19893033--19893377	101	3.4	101	85	2	408	39	21	26	13	1.90
19893040--19893493	51	9.1	49	76	8	346	39	20	26	13	1.90
19893231--19893472	95	2.5	97	85	5	301	40	21	25	12	1.88
19893131--19893511	49	7.7	49	77	6	304	39	20	26	13	1.90
19893887--19894733	206	4.1	206	87	2	1123	34	19	23	23	1.96
19893887--19894733	407	2.1	411	86	2	1159	34	19	23	23	1.96
19895082--19895181	6	17.0	6	70	12	64	43	1	3	53	1.23
19895082--19895181	23	4.3	23	75	7	76	43	1	3	53	1.23
19895105--19895168	29	2.2	29	86	5	85	40	1	3	54	1.25
19895081--19895143	17	3.6	17	81	8	74	38	1	1	58	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19896981--19897168	88	2.1	86	82	6	216	38	25	2	33	1.70
19896993--19897260	59	4.8	57	75	17	211	36	25	2	34	1.70
19896983--19897168	29	6.3	29	77	9	162	38	25	2	33	1.70
19897051--19897260	108	1.9	107	81	11	250	37	26	2	34	1.69
19897248--19897378	59	2.2	58	77	12	133	32	19	6	41	1.78
19898564--19898601	17	2.2	17	86	9	51	21	2	0	76	0.91
19909599--19909632	15	2.2	16	90	10	54	14	11	2	70	1.27
19921503--19921536	5	6.8	5	86	0	50	2	17	0	79	0.86
19921503--19921543	15	2.7	15	80	3	55	2	17	0	80	0.82
19929168--19929261	38	2.5	38	74	8	102	30	12	24	31	1.93
19952970--19953033	29	2.3	28	81	10	69	43	14	3	39	1.61
19957251--19957289	21	1.9	21	84	5	53	23	5	23	48	1.70
19958755--19958878	55	2.3	54	83	4	151	29	17	21	31	1.96
19958842--19958905	26	2.4	27	84	7	78	31	18	18	31	1.95
19958857--19958931	27	2.8	26	82	11	80	28	17	20	34	1.95
19958785--19958959	81	2.1	82	84	3	219	27	16	21	34	1.95
19958939--19959045	26	4.1	26	87	0	151	23	21	24	30	1.99
19959975--19960069	43	2.2	43	100	0	190	27	27	25	20	1.99
19961391--19961432	4	10.5	4	89	0	66	23	2	26	47	1.64
19963960--19964005	19	2.4	19	82	7	58	41	4	13	41	1.63
19973202--19973273	17	4.2	17	77	12	67	23	30	2	43	1.68
19978572--19978630	17	3.5	17	72	25	61	18	37	1	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19978560--19978629	34	2.1	34	94	0	122	17	38	2	41	1.64
19987144--19987196	26	2.0	27	96	3	99	33	18	28	18	1.95
19988088--19988147	27	2.1	31	81	12	74	38	33	0	28	1.57
20011919--20011958	18	2.3	18	86	4	55	17	15	10	57	1.64
20012556--20012598	6	7.2	6	84	10	61	79	0	20	0	0.74
20012555--20012598	19	2.3	20	85	14	67	77	0	22	0	0.77
20017173--20017207	17	2.1	17	94	0	61	54	14	14	17	1.72
20017178--20017215	17	2.2	17	90	0	58	57	10	10	21	1.61
20027338--20027577	53	4.5	53	84	0	293	30	15	19	34	1.93
20035152--20035177	13	2.0	13	100	0	52	30	15	23	30	1.95
20037008--20037070	24	2.6	24	84	0	81	26	14	9	49	1.74
20038995--20039049	24	2.3	24	84	6	67	34	16	1	47	1.57
20040987--20041061	24	3.1	24	84	7	107	25	12	9	53	1.67
20043432--20043461	12	2.5	12	94	0	51	63	10	13	13	1.52
20049210--20049254	14	3.1	14	78	9	54	20	2	6	71	1.20
20056588--20056649	26	2.4	26	100	0	124	22	6	8	62	1.45
20061121--20061161	5	7.6	5	84	15	55	39	2	0	58	1.11
20098900--20098964	24	2.7	23	81	6	76	0	43	0	56	0.99
20101926--20101967	17	2.4	18	78	21	54	50	19	14	16	1.79
20114036--20114078	21	2.0	22	82	13	54	2	20	2	74	1.04
20121343--20121382	18	2.2	18	90	0	62	20	15	25	40	1.90
20125430--20125459	14	2.2	14	94	5	53	36	10	23	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20129914--20129952	20	1.9	21	94	5	71	69	5	12	12	1.35
20135745--20135774	14	2.2	14	94	5	53	36	10	23	30	1.87
20136550--20136701	76	2.0	75	93	1	259	30	27	15	26	1.96
20143578--20143635	14	4.0	14	76	13	55	75	1	5	17	1.06
20149779--20149821	21	2.1	21	86	4	61	32	2	34	30	1.71
20151361--20151408	15	3.2	15	85	5	53	33	22	10	33	1.88
20166806--20166856	16	3.0	17	83	11	52	11	9	3	74	1.19
20168676--20168729	21	2.6	21	82	5	65	62	0	35	1	1.06
20175037--20175076	15	2.7	15	88	0	53	37	20	12	30	1.89
20185045--20185090	24	1.9	24	81	0	56	2	30	4	63	1.26
20187703--20187823	62	1.9	63	90	5	192	26	20	19	33	1.97
20189377--20189412	18	2.0	18	88	0	54	19	13	13	52	1.74
20201498--20201542	16	2.6	17	89	6	65	37	22	17	22	1.94
20205872--20205923	24	2.2	23	80	16	54	17	7	5	69	1.33
20208014--20208051	17	2.2	17	90	0	58	23	13	10	52	1.71
20216491--20216554	32	2.0	33	90	3	103	42	18	3	35	1.66
20217989--20218026	19	2.0	19	100	0	76	47	21	5	26	1.71
20228962--20229139	37	4.8	37	87	4	234	13	22	33	30	1.93
20229000--20229056	16	3.2	16	69	21	51	15	22	31	29	1.95
20228958--20229142	74	2.5	74	89	0	280	13	22	32	31	1.92
20232610--20232651	3	14.3	3	95	5	77	64	0	0	35	0.94
20232869--20232925	22	2.6	22	97	0	105	31	26	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20239592--20239675	27	3.1	27	96	0	150	45	29	8	16	1.77
20240890--20240921	16	2.0	16	100	0	64	18	0	0	81	0.70
20241024--20241063	17	2.5	17	84	15	50	17	5	2	75	1.10
20244061--20244111	18	2.7	19	75	6	59	58	0	1	39	1.09
20253316--20253410	44	2.2	44	88	0	136	53	14	18	12	1.72
20255584--20255798	50	4.3	50	79	4	218	34	18	21	25	1.96
20255609--20255846	100	2.4	100	84	2	318	33	20	20	26	1.97
20257862--20257899	19	2.0	20	89	5	60	21	0	5	73	1.02
20259353--20259586	86	2.7	86	82	10	241	37	16	9	36	1.82
20259377--20259586	86	2.5	84	82	9	250	36	16	10	37	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126