genome.fa.s1.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  117  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35104296--35104333	15	2.4	16	86	4	51	47	10	18	23	1.79
35118154--35118226	32	2.3	32	81	9	87	34	0	1	64	1.02
35118714--35118788	37	2.0	37	89	0	114	49	4	18	28	1.65
35118905--35118966	26	2.5	25	82	12	76	27	0	3	69	1.04
35127609--35127722	57	2.0	58	89	1	176	34	0	18	47	1.49
35128369--35128451	17	4.8	17	77	5	94	37	2	3	56	1.30
35129100--35129145	23	2.0	23	83	8	58	65	2	2	30	1.16
35130218--35130340	30	4.1	29	80	6	111	37	22	1	38	1.64
35130232--35130489	29	8.8	29	76	9	186	34	25	3	37	1.72
35130237--35130576	29	11.6	30	73	10	154	34	25	3	37	1.73
35130262--35130516	58	4.4	58	75	12	173	33	25	3	37	1.73
35130238--35130523	87	3.3	85	76	12	258	34	25	3	36	1.73
35130803--35130995	97	2.0	98	89	1	298	28	18	16	36	1.92
35133780--35133871	22	4.3	21	84	6	114	6	6	20	66	1.38
35133793--35133849	10	5.5	10	76	15	62	8	8	15	66	1.43
35133793--35133882	22	4.2	21	84	5	92	7	5	17	68	1.33
35133867--35133925	21	2.7	22	74	12	59	10	5	18	66	1.40
35133876--35133914	21	1.9	21	89	5	62	10	5	17	66	1.39
35133885--35133989	21	4.8	23	73	15	71	5	6	20	67	1.34
35133885--35133989	44	2.4	44	81	1	120	5	6	20	67	1.34
35133802--35133941	73	1.9	74	80	5	167	7	5	19	67	1.37
35133917--35133985	32	2.1	33	86	2	95	2	5	21	69	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35141245--35141301	28	2.0	28	96	0	105	26	8	7	57	1.54
35143595--35143724	57	2.3	57	81	6	140	47	10	14	27	1.76
35145938--35146028	9	9.4	10	74	12	57	35	2	3	59	1.26
35145956--35146039	11	8.3	10	72	13	57	29	2	3	64	1.23
35146170--35146217	21	2.1	24	85	11	66	39	16	8	35	1.79
35148167--35148215	19	2.5	20	87	9	66	53	8	0	38	1.31
35148225--35148272	21	2.4	19	78	18	53	64	2	6	27	1.28
35148489--35148536	21	2.3	20	76	13	53	22	20	16	39	1.92
35154090--35154152	23	2.7	23	87	0	99	30	23	17	28	1.97
35158599--35158624	2	13.0	2	100	0	52	50	0	50	0	1.00
35162970--35163014	18	2.5	18	89	7	65	44	0	0	55	0.99
35164835--35164947	11	9.9	11	69	9	66	26	3	5	64	1.31
35170551--35170625	11	6.5	11	75	11	62	5	25	0	69	1.09
35170558--35170622	23	2.8	22	79	11	58	6	24	0	69	1.11
35170995--35171062	21	3.2	21	87	2	100	44	32	0	23	1.54
35171046--35171075	15	2.0	15	93	0	51	43	33	3	20	1.68
35172255--35172293	3	13.3	3	94	5	71	30	0	0	69	0.89
35177637--35177711	11	6.5	11	75	11	62	5	25	0	69	1.09
35177644--35177708	23	2.8	22	79	11	58	6	24	0	69	1.11
35178080--35178147	21	3.2	21	91	2	109	44	33	0	22	1.53
35178131--35178160	15	2.0	15	93	0	51	43	33	3	20	1.68
35178197--35178255	21	2.8	20	82	2	55	15	22	32	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35178249--35178300	20	2.6	20	87	0	77	15	25	25	34	1.95
35178277--35178303	13	2.1	13	100	0	54	14	22	22	40	1.90
35179348--35179377	3	10.3	3	92	7	53	30	0	0	70	0.88
35179904--35179955	22	2.5	21	84	9	63	59	0	0	40	0.97
35180986--35181028	21	2.1	20	83	12	52	37	0	11	51	1.39
35181969--35182000	2	16.0	2	100	0	64	50	0	0	50	1.00
35185510--35186238	199	3.7	198	84	5	911	25	15	25	33	1.95
35187490--35187543	21	2.6	21	78	0	63	44	29	3	22	1.70
35192274--35192312	17	2.3	17	86	0	51	17	10	25	46	1.80
35192898--35192972	30	2.4	30	82	4	96	49	0	2	48	1.15
35193768--35193832	21	3.0	21	86	11	78	50	1	0	47	1.10
35194742--35194806	31	2.1	31	88	2	96	36	12	9	41	1.75
35198502--35198567	33	2.0	34	93	3	116	71	6	10	12	1.31
35203666--35203810	60	2.4	60	83	2	184	18	15	17	48	1.82
35207566--35207695	36	3.6	36	96	1	235	29	13	17	39	1.89
35225816--35225872	20	3.0	20	85	10	66	47	5	0	47	1.24
35225838--35225875	2	19.0	2	100	0	76	50	0	0	50	1.00
35235139--35235178	20	2.0	21	85	5	55	25	7	5	62	1.42
35236468--35236817	126	2.7	128	81	9	363	33	16	10	39	1.82
35236722--35236924	111	1.8	113	84	8	281	38	13	8	38	1.75
35237726--35237765	21	1.9	21	89	0	62	47	0	0	52	1.00
35238195--35238232	17	2.2	18	86	13	53	57	0	5	36	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35238209--35238268	28	2.2	29	79	11	72	56	0	3	40	1.16
35238896--35238924	4	7.5	4	92	7	51	24	0	0	75	0.80
35238832--35239039	71	3.0	69	92	4	350	41	0	3	54	1.22
35246349--35246455	50	2.1	50	81	3	117	37	17	20	24	1.94
35246507--35246779	40	6.9	40	77	5	261	30	27	18	23	1.98
35246480--35246780	79	3.9	79	85	4	362	30	26	18	24	1.98
35246510--35246740	119	1.9	118	81	6	270	30	26	18	24	1.98
35247303--35247438	59	2.3	60	85	10	183	39	0	3	56	1.17
35248981--35249035	20	2.7	21	83	10	62	30	10	0	58	1.33
35248994--35249035	20	2.0	22	86	13	63	28	14	0	57	1.38
35260961--35260988	1	28.0	1	100	0	56	0	100	0	0	0.00
35264176--35264331	62	2.5	62	85	5	199	45	30	1	23	1.61
35264611--35264655	19	2.5	20	82	17	62	24	2	0	73	0.95
35264611--35264656	17	2.6	18	86	10	60	26	2	0	71	0.97
35267214--35267353	68	2.1	68	98	0	271	35	11	19	33	1.87
35269095--35269142	23	2.0	25	88	12	73	41	0	0	58	0.98
35271609--35271660	27	1.9	27	88	7	79	38	1	0	59	1.08
35271613--35271677	22	3.0	22	74	17	55	44	3	0	52	1.16
35279609--35279659	10	5.1	10	76	13	52	62	0	0	37	0.95
35290209--35290382	86	2.0	86	98	0	339	29	9	18	42	1.82
35295365--35295436	35	2.1	35	100	0	144	52	11	19	16	1.73
35301866--35301933	31	2.2	31	86	2	93	36	10	5	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35302638--35302682	3	15.0	3	95	0	81	33	2	0	64	1.06
35303250--35303280	16	1.9	16	93	0	53	64	0	0	35	0.94
35307325--35307428	23	4.5	23	85	8	99	38	18	11	31	1.86
35308665--35308749	24	3.7	22	75	13	64	69	14	7	9	1.36
35308687--35308764	23	3.4	22	77	8	68	67	14	6	11	1.39
35308757--35308806	20	2.5	20	86	0	64	64	18	6	12	1.47
35312918--35312953	3	12.0	3	93	0	63	33	2	33	30	1.72
35319243--35319287	22	2.0	23	91	4	74	37	0	0	62	0.96
35327057--35327097	21	1.9	22	90	5	66	21	2	4	70	1.18
35328530--35328576	21	2.2	21	88	7	69	51	19	0	29	1.47
35329398--35329435	14	2.6	15	91	4	60	84	0	15	0	0.63
35330938--35330977	21	1.9	21	89	0	62	40	2	2	55	1.27
35333486--35333518	11	2.8	12	81	9	50	54	0	9	36	1.32
35339637--35339674	20	1.9	20	88	0	58	55	0	31	13	1.38
35356841--35356884	19	2.5	17	82	10	61	59	4	4	31	1.38
35356910--35356974	27	2.4	27	87	7	87	56	0	0	43	0.99
35359672--35359705	14	2.3	15	90	10	52	29	0	0	70	0.87
35359678--35359721	20	2.0	21	87	12	63	31	2	0	65	1.05
35367528--35367583	29	1.9	29	85	0	76	53	0	3	42	1.18
35369658--35369682	12	2.1	12	100	0	50	36	16	16	32	1.90
35369907--35369945	5	8.0	5	91	5	62	82	2	15	0	0.79
35370431--35370985	183	3.0	181	90	2	826	17	18	27	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35371514--35371553	21	1.9	21	85	10	55	55	0	27	17	1.43
35372715--35372803	6	15.2	6	70	17	62	43	1	3	51	1.25
35372714--35372795	18	4.7	18	84	4	105	43	0	3	52	1.18
35372715--35372795	17	4.6	18	87	1	103	43	0	3	53	1.18
35373394--35373429	17	2.0	19	89	10	58	52	0	0	47	1.00
35374634--35374778	28	5.0	28	75	14	116	39	24	2	33	1.70
35374634--35374843	30	7.1	29	73	13	144	37	28	2	32	1.70
35374795--35375078	29	9.7	28	70	18	125	34	26	3	34	1.74
35374795--35375079	59	4.8	58	85	5	349	34	27	3	34	1.74
35374679--35375019	30	11.7	29	72	16	169	36	26	2	34	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126