genome.fa.s1.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  31  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9503066--9503120	4	13.2	4	88	7	83	0	29	0	70	0.87
9504127--9504177	23	2.3	22	83	16	70	70	3	0	25	1.04
9509685--9510872	594	2.0	594	99	0	2358	30	15	20	33	1.94
9516517--9516570	24	2.2	24	78	15	58	61	1	0	37	1.07
9516514--9516561	16	2.9	17	75	9	55	64	2	0	33	1.05
9516877--9516941	20	3.2	20	80	6	69	35	6	1	56	1.33
9516897--9516969	9	7.7	9	78	14	67	31	1	4	63	1.22
9531641--9531695	28	1.9	29	85	3	76	49	5	3	41	1.43
9533766--9533803	16	2.4	16	95	0	67	55	13	0	31	1.38
9533907--9533983	40	2.0	40	89	2	120	50	10	18	20	1.75
9534016--9534109	26	3.4	26	79	16	116	28	1	10	59	1.38
9534016--9534086	32	2.2	32	92	0	115	26	1	11	60	1.39
9534016--9534115	32	3.3	32	72	16	113	28	2	11	59	1.43
9534135--9534196	21	3.0	20	73	19	56	20	0	32	46	1.51
9534143--9534206	21	3.1	20	74	14	67	17	0	32	50	1.46
9534238--9534279	14	3.0	14	86	6	50	47	19	0	33	1.49
9534253--9534283	14	2.2	14	100	0	62	48	19	0	32	1.49
9534308--9534390	32	2.6	32	92	0	139	63	10	1	24	1.33
9534399--9534453	27	2.0	27	96	0	101	20	25	30	23	1.98
9534506--9534531	13	2.0	13	100	0	52	15	0	0	84	0.62
9535975--9536020	24	1.9	24	90	0	74	34	0	4	60	1.16
9536108--9536142	18	2.0	17	88	5	52	8	0	22	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9536109--9536149	18	2.4	18	84	8	50	9	0	19	70	1.14
9536209--9536254	21	2.2	21	96	0	83	30	10	10	47	1.73
9538891--9538974	43	2.0	43	90	0	132	46	13	11	28	1.78
9542940--9542990	3	16.7	3	87	4	75	60	0	39	0	0.97
9542946--9542987	22	1.9	22	95	0	75	59	0	40	0	0.97
9544015--9544076	28	2.3	27	81	13	74	56	3	1	38	1.25
9545049--9545087	14	2.8	14	92	0	60	38	5	20	35	1.75
9547521--9547636	61	1.9	59	89	6	180	53	3	1	41	1.28
9547549--9547581	12	2.8	12	86	13	50	54	0	0	45	0.99
9552192--9552331	72	1.9	72	100	0	280	20	15	29	35	1.93
9552706--9552898	96	2.0	96	92	0	323	33	15	24	26	1.95
9558284--9558355	16	4.5	16	86	8	94	38	4	29	27	1.75
9558526--9558667	58	2.4	59	86	8	191	50	0	0	47	1.11
9558591--9558678	12	7.4	12	69	20	51	52	1	0	46	1.08
9563280--9563316	3	12.0	3	94	5	65	35	0	0	64	0.94
9569569--9569660	46	2.0	47	89	4	143	8	55	2	33	1.43
9571029--9571268	89	2.7	90	85	5	317	35	11	17	35	1.87
9572947--9572995	25	2.0	25	87	0	71	40	4	2	53	1.32
9572982--9573021	17	2.4	16	84	12	53	40	5	5	50	1.46
9573672--9573722	24	2.1	24	96	0	93	35	3	13	47	1.62
9574917--9574999	30	2.8	31	81	3	100	34	22	4	37	1.76
9574937--9575154	29	7.5	29	69	20	89	33	25	2	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9574937--9575129	58	3.3	58	78	10	173	33	26	3	37	1.72
9574978--9575130	58	2.6	58	82	6	202	31	30	2	35	1.71
9575026--9575153	28	4.5	27	73	14	96	35	25	1	38	1.65
9587203--9588042	200	4.2	200	84	4	1052	36	20	22	20	1.95
9588425--9588493	11	5.8	12	72	14	63	42	2	1	53	1.24
9588425--9588529	17	6.0	17	71	18	65	43	2	2	50	1.31
9588410--9588493	42	2.0	42	86	4	116	41	3	2	52	1.31
9588425--9588493	6	11.7	6	73	14	63	42	2	1	53	1.24
9590382--9590438	29	1.9	30	92	3	98	40	22	1	35	1.65
9590392--9590494	30	3.5	30	74	9	77	33	24	4	36	1.77
9590481--9590583	30	3.5	29	72	17	95	33	24	4	37	1.77
9590449--9590613	58	2.8	60	82	4	201	32	26	4	36	1.76
9590569--9590640	29	2.5	29	82	8	76	34	19	1	44	1.59
9600801--9600844	21	2.1	21	100	0	88	31	18	18	31	1.95
9601458--9601575	61	1.9	61	84	3	157	45	12	6	34	1.69
9604379--9604501	45	2.7	45	94	0	210	50	13	19	17	1.78
9606044--9606090	19	2.6	18	77	9	51	48	6	0	44	1.28
9606242--9606301	29	2.0	30	83	6	77	55	0	16	28	1.42
9607152--9607407	129	2.0	129	87	3	372	35	19	14	30	1.92
9610764--9610813	4	13.2	4	85	8	61	70	0	30	0	0.88
9610761--9610804	22	2.0	23	90	4	72	68	0	31	0	0.90
9610757--9610813	12	4.6	11	74	21	51	71	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9614683--9614817	54	2.5	54	100	0	270	25	22	11	40	1.87
9617356--9617408	21	2.6	20	81	3	61	62	3	1	32	1.24
9617356--9617406	10	5.0	10	77	13	50	64	1	1	31	1.15
9622583--9622635	9	6.8	9	74	25	50	50	0	0	49	1.00
9622588--9622660	29	2.4	31	93	4	123	52	0	1	46	1.09
9652723--9652769	25	2.0	24	87	8	69	46	17	8	27	1.76
9673772--9673862	50	1.9	46	82	14	114	37	12	5	45	1.65
9678442--9678492	5	10.6	5	75	8	52	39	0	1	58	1.09
9683566--9683616	24	2.1	25	88	3	77	39	1	3	54	1.30
9687761--9687786	3	8.7	3	100	0	52	65	0	34	0	0.93
9688889--9688932	18	2.4	18	84	0	61	65	2	0	31	1.05
9692920--9692985	2	33.0	2	100	0	132	50	0	0	50	1.00
9697164--9697219	23	2.4	23	75	0	58	53	25	5	16	1.63
9700364--9700463	33	3.0	33	86	0	128	31	20	21	28	1.98
9703157--9703221	24	2.7	24	82	0	85	50	9	12	27	1.70
9710165--9710242	33	2.4	33	88	0	111	30	19	19	30	1.96
9714468--9714657	97	2.0	97	84	0	254	35	16	20	27	1.94
9714992--9715278	29	9.9	28	73	9	148	34	4	26	33	1.78
9714981--9715298	58	5.4	58	78	8	227	35	5	25	34	1.78
9714990--9715376	30	13.2	29	76	11	231	34	4	25	36	1.75
9714980--9715369	60	6.6	58	78	8	281	35	4	25	35	1.76
9715329--9715406	30	2.6	29	81	4	84	34	1	24	39	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9717135--9717229	17	5.5	17	77	5	73	53	5	5	35	1.46
9717149--9717229	35	2.3	35	82	0	99	56	6	3	33	1.42
9717726--9718189	210	2.2	210	88	1	696	21	21	20	36	1.95
9729590--9729783	97	2.0	97	83	2	246	36	15	19	27	1.93
9730035--9730530	29	17.0	28	75	11	322	34	3	26	35	1.73
9730035--9730565	58	9.1	57	77	7	390	34	3	26	35	1.73
9732381--9732413	6	5.7	6	89	7	50	54	3	0	42	1.15
9732381--9732413	17	1.9	17	93	0	57	54	3	0	42	1.15
9732907--9732962	23	2.4	23	81	0	67	55	25	3	16	1.57
9733026--9733065	17	2.4	17	100	0	80	42	0	0	57	0.98
9733058--9733137	31	2.6	31	91	0	124	43	7	3	45	1.50
9733393--9733676	30	9.7	29	75	16	169	37	23	3	35	1.71
9733393--9733676	58	4.8	57	82	6	277	37	23	3	35	1.71
9733422--9733677	29	8.7	29	74	10	164	36	24	3	35	1.73
9742026--9742067	15	2.8	15	80	19	52	73	0	21	4	1.01
9748660--9748695	16	2.2	17	90	5	56	72	2	0	25	0.98
9748686--9748722	15	2.4	16	90	4	58	64	0	2	32	1.07
9752519--9752570	20	2.6	20	75	0	59	36	13	9	40	1.77
9752655--9752707	24	2.2	24	83	10	63	30	13	7	49	1.69
9752944--9753025	20	3.9	21	68	19	55	39	15	4	40	1.69
9754695--9754736	14	3.1	14	79	3	50	26	16	7	50	1.71
9757077--9757181	29	3.6	29	81	0	102	41	20	14	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9759697--9759750	21	2.6	21	79	5	65	29	14	24	31	1.95
9760286--9760430	53	2.7	52	83	8	159	28	34	15	22	1.94
9761800--9761894	42	2.3	42	83	3	120	28	16	22	32	1.96
9766692--9766870	41	4.4	41	80	2	189	31	20	28	19	1.97
9770358--9770439	43	1.9	43	84	0	110	34	12	19	34	1.89
9773979--9774038	31	1.9	31	93	0	102	63	3	28	5	1.31
9773974--9774046	31	2.4	30	84	6	101	65	2	27	4	1.24
9777947--9778012	7	9.7	7	81	6	64	39	21	19	19	1.93
9777945--9777999	20	2.8	20	83	8	76	45	18	16	20	1.86
9777945--9777999	13	4.2	13	83	4	65	45	18	16	20	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126