genome.fa.s1.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  30  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9319627--9319692	14	4.7	14	80	14	55	50	0	19	30	1.48
9319621--9319692	21	3.4	21	76	14	67	50	0	19	30	1.48
9319624--9319677	28	1.9	28	85	7	74	57	0	14	27	1.38
9322550--9322623	30	2.4	31	80	8	89	59	4	1	35	1.25
9327814--9327859	19	2.3	20	92	3	76	58	6	4	30	1.43
9327813--9327859	10	4.8	10	76	5	51	57	6	4	31	1.43
9328588--9328644	30	1.9	30	88	0	87	29	10	19	40	1.85
9330530--9330594	29	2.2	29	83	8	78	41	3	16	38	1.64
9330620--9330781	88	1.8	89	83	9	215	35	3	25	35	1.72
9330532--9330941	30	13.8	30	74	9	243	36	3	23	36	1.72
9330628--9330933	121	2.5	120	82	4	314	36	3	24	35	1.72
9335694--9335787	38	2.5	38	85	0	125	34	15	19	30	1.93
9337663--9337731	22	3.4	19	79	18	68	26	5	2	65	1.29
9337770--9337803	10	3.5	10	88	4	52	23	0	2	73	0.97
9339317--9339402	16	5.6	16	68	18	56	44	1	1	53	1.15
9355435--9355523	31	2.9	31	88	6	110	25	8	10	55	1.63
9356840--9356993	76	2.0	76	100	0	308	37	9	20	32	1.86
9368460--9368687	118	1.9	118	97	0	431	41	21	9	26	1.84
9375537--9375586	15	3.3	15	81	10	66	2	22	0	76	0.89
9375532--9375598	15	4.1	15	75	21	64	2	20	0	76	0.92
9375543--9375592	21	2.5	21	87	6	68	2	22	0	76	0.89
9377371--9377418	24	2.0	24	84	12	62	70	6	8	14	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9389681--9389736	28	2.0	28	85	0	76	25	32	14	28	1.94
9389761--9389799	19	2.1	19	95	0	69	28	25	17	28	1.98
9397417--9397461	16	2.9	16	81	18	60	57	6	0	35	1.25
9399722--9399771	2	25.0	2	100	0	100	50	0	0	50	1.00
9399757--9400039	137	2.1	134	88	6	430	39	4	16	39	1.68
9400943--9401062	41	3.0	41	87	1	107	37	18	23	20	1.94
9400985--9401062	41	1.9	41	100	0	156	32	17	25	24	1.97
9401116--9401314	41	4.8	41	91	3	319	34	20	27	17	1.95
9403612--9403679	34	2.0	34	85	0	91	44	16	0	39	1.48
9403711--9403738	8	3.5	8	100	0	56	35	0	0	64	0.94
9403607--9403875	135	2.0	136	92	3	456	48	10	0	40	1.40
9403716--9403814	34	2.8	34	81	4	108	47	8	1	43	1.39
9403652--9403860	45	4.6	46	69	11	151	49	8	0	41	1.36
9403832--9403895	18	3.2	20	86	13	96	42	1	0	56	1.09
9403846--9403881	8	4.2	8	86	13	54	38	0	0	61	0.96
9403876--9404110	34	6.6	34	66	16	111	49	9	0	40	1.41
9403999--9404039	17	2.2	19	87	12	59	39	0	0	60	0.96
9404085--9404113	4	7.2	4	100	0	58	51	0	0	48	1.00
9404152--9404193	20	2.2	18	91	8	66	40	0	0	59	0.97
9404174--9404259	34	2.5	34	84	3	111	48	10	1	39	1.45
9403710--9404372	154	4.3	154	89	8	968	48	8	0	42	1.39
9404239--9404263	4	6.2	4	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9404292--9404355	18	3.2	20	82	13	87	40	3	0	56	1.15
9410401--9410671	86	3.2	85	81	7	289	26	18	26	28	1.98
9410401--9410671	43	6.3	43	80	5	255	26	18	26	28	1.98
9413244--9413297	3	18.3	3	96	3	101	68	0	0	31	0.90
9414330--9414458	7	19.0	7	72	6	95	31	22	27	18	1.97
9414336--9414456	20	6.3	20	70	16	103	31	21	28	19	1.97
9414338--9414448	47	2.3	47	86	6	161	32	22	26	18	1.97
9414371--9414458	34	2.6	34	89	1	124	32	22	26	18	1.97
9414356--9414465	54	2.1	52	81	5	123	30	22	28	19	1.98
9414512--9414546	14	2.4	15	95	4	63	11	5	31	51	1.61
9414536--9414579	21	2.1	21	95	0	79	15	0	34	50	1.45
9414543--9414609	21	3.1	23	81	10	79	20	0	34	44	1.52
9415079--9415112	10	3.6	10	84	15	54	82	0	17	0	0.67
9415078--9415112	18	1.9	18	100	0	70	82	0	17	0	0.66
9417484--9417517	17	2.0	17	100	0	68	35	23	23	17	1.95
9418223--9418275	3	18.0	3	78	18	58	32	0	3	64	1.12
9418408--9418461	23	2.3	24	87	12	85	48	1	0	50	1.11
9419470--9419515	22	2.1	22	84	4	58	45	2	13	39	1.55
9421994--9422026	6	5.5	6	100	0	66	33	51	15	0	1.43
9426202--9426243	22	2.0	22	90	4	68	47	4	0	47	1.23
9427863--9427902	3	13.3	3	100	0	80	32	0	0	67	0.91
9428155--9428220	34	1.9	35	84	3	89	51	27	1	19	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9430545--9430578	17	1.9	18	88	5	52	26	0	2	70	1.01
9430993--9431051	27	2.2	27	85	8	86	57	0	0	42	0.98
9431018--9431064	21	2.2	21	88	7	69	55	4	0	40	1.19
9436259--9436452	43	4.5	43	83	5	250	29	27	19	23	1.98
9436259--9436443	86	2.2	86	88	0	289	30	28	18	22	1.97
9436423--9436480	29	2.0	29	87	12	84	31	27	20	20	1.98
9436380--9436526	72	2.0	72	90	2	233	29	28	19	22	1.98
9436452--9436639	43	4.4	42	78	9	164	28	28	18	25	1.98
9436453--9436639	87	2.2	85	79	6	198	28	27	18	25	1.98
9438425--9438490	32	2.1	32	97	0	123	50	9	4	36	1.55
9438579--9438670	8	12.2	8	66	17	54	52	1	1	45	1.15
9438565--9438716	66	2.4	61	88	8	209	50	1	0	47	1.14
9438602--9438716	60	1.9	59	84	10	153	50	1	0	46	1.17
9438632--9438716	26	3.2	26	81	8	91	52	1	0	45	1.08
9438556--9438732	92	1.9	95	91	4	297	50	1	1	46	1.18
9438644--9438699	18	3.2	18	76	16	64	53	0	0	46	1.00
9451083--9451212	50	2.6	50	86	0	161	35	20	21	23	1.96
9451127--9451229	50	2.1	50	85	3	136	39	20	19	20	1.92
9451277--9451611	40	8.4	40	78	6	347	32	25	16	25	1.96
9451277--9451611	80	4.2	80	88	1	449	32	25	16	25	1.96
9453347--9453532	30	6.1	30	82	9	216	40	24	2	32	1.69
9453347--9453532	61	3.0	61	85	3	241	40	24	2	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9459674--9459712	6	6.5	6	87	0	51	23	30	0	46	1.53
9462153--9462179	5	5.4	5	100	0	54	81	18	0	0	0.69
9463786--9463971	41	4.5	42	82	3	225	28	24	21	25	1.99
9463818--9463992	82	2.1	82	82	0	206	29	26	21	23	1.99
9463786--9463992	41	5.0	41	79	1	101	28	25	20	25	1.99
9470113--9470163	22	2.4	20	81	18	59	68	1	3	25	1.17
9474591--9474683	31	3.1	31	72	12	95	50	8	15	25	1.72
9474609--9474661	27	2.0	27	84	0	70	50	7	16	24	1.71
9482792--9482818	3	9.0	3	100	0	54	0	33	0	66	0.92
9482963--9483129	83	2.0	83	89	2	255	55	23	4	16	1.58
9486109--9486154	14	2.9	16	84	12	51	41	0	0	58	0.98
9486115--9486166	12	4.1	12	80	11	50	44	0	0	55	0.99
9492973--9493012	4	10.8	4	79	15	50	77	0	22	0	0.77
9492977--9493012	15	2.4	15	95	0	63	77	0	22	0	0.76
9492973--9492998	11	2.4	11	100	0	52	80	0	19	0	0.71
9493162--9493196	18	1.9	18	88	11	54	25	0	11	62	1.28
9493368--9493410	21	2.1	20	91	4	68	27	0	13	58	1.37
9493909--9493933	11	2.3	11	100	0	50	68	0	0	32	0.90
9494117--9494165	16	3.3	15	73	26	50	59	6	0	34	1.22
9494209--9494304	30	3.2	29	71	10	86	34	6	13	45	1.69
9495474--9495562	43	2.1	43	82	4	108	31	12	8	47	1.72
9496107--9496243	45	3.0	45	89	0	193	32	26	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9496504--9496590	21	4.1	21	72	5	68	49	27	1	21	1.57
9496502--9496580	14	5.6	14	75	10	63	46	27	1	24	1.60
9496509--9496580	28	2.6	28	77	4	83	48	26	1	23	1.59
9496840--9496976	45	3.0	44	90	2	193	31	26	20	21	1.98
9497235--9497308	14	5.3	14	72	15	64	50	27	1	21	1.57
9497234--9497302	28	2.5	27	83	4	75	49	26	1	23	1.59
9497235--9497286	21	2.5	21	81	9	61	51	25	0	23	1.48
9497440--9497489	26	1.9	26	83	0	64	60	4	4	32	1.34
9500851--9500893	21	2.0	21	86	8	61	39	30	0	30	1.57
9503051--9503120	16	4.1	18	83	14	69	1	31	0	67	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126