genome.fa.s1.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  104  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31405017--31405102	11	8.0	11	75	13	72	46	2	0	51	1.13
31405006--31405102	17	5.9	17	77	9	94	45	2	1	51	1.19
31406129--31406167	21	1.9	21	84	5	53	58	5	12	23	1.54
31406222--31406250	14	2.0	15	93	6	51	34	24	20	20	1.97
31407026--31407406	30	12.7	30	88	1	523	37	24	2	35	1.71
31407387--31407587	59	3.4	58	69	9	165	29	27	4	38	1.76
31413354--31413430	28	2.8	28	95	0	136	37	6	6	49	1.55
31416400--31416495	41	2.3	41	92	0	156	31	6	26	36	1.81
31418412--31418453	6	7.3	6	78	10	52	40	0	0	59	0.97
31418412--31418525	17	7.1	17	72	10	87	42	4	1	51	1.32
31419216--31419266	3	17.0	3	100	0	102	66	0	0	33	0.92
31419314--31419351	15	2.7	14	84	8	51	52	0	0	47	1.00
31420098--31420404	162	1.9	162	94	0	542	24	17	14	42	1.87
31420105--31420445	162	2.1	162	89	2	515	25	18	14	41	1.88
31420516--31421005	59	8.4	59	84	2	621	32	28	3	36	1.73
31420982--31421046	28	2.3	29	81	7	89	32	29	12	26	1.92
31427792--31427869	2	39.0	2	100	0	156	50	0	0	50	1.00
31433646--31433693	25	1.9	25	83	8	62	33	14	4	47	1.63
31434328--31434359	3	10.7	3	100	0	64	68	31	0	0	0.90
31438270--31438326	23	2.5	23	91	0	96	28	26	22	22	1.99
31446119--31446166	24	1.9	26	84	16	66	45	0	22	31	1.53
31446265--31446323	22	2.7	22	94	0	100	10	22	32	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31446333--31446380	25	1.9	25	86	0	69	12	33	16	37	1.86
31450680--31450719	18	2.2	19	86	13	57	32	5	0	62	1.17
31453868--31453954	43	2.0	43	95	0	156	33	19	17	29	1.95
31453871--31453987	43	2.7	43	86	4	155	32	17	19	30	1.95
31455358--31455396	18	2.1	19	90	4	62	61	0	5	33	1.18
31456983--31457212	113	2.0	113	94	1	399	41	6	20	30	1.79
31459172--31459239	35	1.9	35	82	8	84	32	4	2	60	1.32
31460285--31460331	24	2.0	24	84	12	62	48	14	4	31	1.63
31461331--31461787	60	7.8	56	74	12	348	26	18	16	38	1.91
31461316--31461743	119	3.6	115	78	11	377	25	17	16	39	1.91
31461800--31462163	59	6.1	57	73	12	259	40	15	15	28	1.87
31461800--31462157	119	3.0	117	81	8	427	40	15	15	28	1.88
31462111--31462224	54	2.1	54	83	8	142	35	15	17	30	1.91
31480541--31480573	2	16.5	2	100	0	66	0	48	0	51	1.00
31482637--31482697	24	2.7	22	82	10	61	60	1	3	34	1.23
31482637--31482701	23	2.8	24	81	11	64	61	1	3	33	1.21
31482928--31482983	28	2.0	28	86	6	78	55	0	0	44	0.99
31483454--31483775	58	5.5	57	82	8	364	32	19	16	32	1.94
31483454--31483775	115	2.8	116	83	8	354	32	19	16	32	1.94
31483792--31483863	37	1.9	38	88	8	112	34	9	15	40	1.80
31487531--31487578	12	3.7	12	77	20	51	47	0	10	41	1.37
31487709--31488152	89	5.1	89	88	7	635	38	5	4	51	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31487709--31488167	175	2.7	168	89	7	658	38	5	4	51	1.45
31487709--31488167	86	5.3	85	90	5	635	38	5	4	51	1.45
31488276--31488317	22	2.0	21	90	4	66	42	33	7	16	1.75
31490438--31490503	30	2.2	30	84	10	82	30	1	6	62	1.29
31491349--31491726	60	6.2	59	77	12	365	32	16	20	30	1.95
31491376--31491726	184	1.9	184	83	7	451	33	16	19	31	1.94
31491987--31492034	19	2.6	19	87	12	73	31	0	0	68	0.90
31494962--31495141	93	1.9	93	88	0	270	26	15	21	37	1.92
31501960--31502020	28	2.1	29	87	3	88	29	1	4	63	1.24
31525924--31525953	4	7.5	4	100	0	60	76	0	0	23	0.78
31527075--31527236	81	2.0	81	93	2	281	41	19	14	23	1.89
31534245--31534306	25	2.4	26	81	10	74	62	4	0	32	1.16
31534580--31534610	7	4.4	7	100	0	62	25	0	0	74	0.82
31534884--31535249	10	37.2	10	68	14	88	30	2	4	61	1.31
31534871--31534937	20	3.4	20	74	13	59	26	1	2	68	1.12
31534903--31535249	20	18.2	19	67	18	120	30	2	5	61	1.31
31534903--31535249	19	17.7	19	67	13	111	30	2	5	61	1.31
31535142--31535238	9	10.3	9	75	11	79	29	1	5	63	1.22
31535125--31535249	58	2.2	58	82	8	148	30	1	6	61	1.30
31535200--31535238	17	2.3	16	83	12	51	33	0	0	66	0.92
31535161--31535249	11	8.0	11	72	14	51	28	0	5	66	1.14
31535596--31535667	8	8.0	10	70	23	54	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31535598--31535655	15	3.8	16	71	28	54	36	0	0	63	0.94
31535626--31535655	15	2.0	15	100	0	60	33	0	0	66	0.92
31536332--31536369	16	2.2	18	90	9	62	60	0	0	39	0.97
31539667--31539702	18	2.0	18	88	0	54	16	13	38	30	1.88
31541583--31541703	23	5.2	22	80	11	143	14	24	20	40	1.89
31541583--31541703	48	2.6	46	84	7	163	14	24	20	40	1.89
31541668--31541742	39	1.9	39	91	0	123	12	22	21	44	1.85
31541702--31541795	23	4.0	23	75	16	86	11	25	19	43	1.84
31546466--31546539	31	2.4	31	97	0	139	35	12	8	44	1.71
31553491--31553534	21	2.0	22	86	8	63	47	0	0	52	1.00
31553494--31553562	29	2.3	31	85	7	99	52	1	0	46	1.09
31553494--31553572	29	2.7	28	77	14	88	51	1	0	46	1.08
31555253--31555353	48	2.1	48	96	0	184	38	7	17	35	1.79
31563171--31563210	18	2.2	18	86	8	55	20	27	7	45	1.78
31563077--31563594	165	3.1	165	92	1	876	24	19	15	39	1.91
31563281--31563360	36	2.2	36	81	0	97	26	22	7	43	1.79
31563501--31563540	18	2.2	18	86	8	55	20	27	7	45	1.78
31563994--31564051	18	3.2	18	85	0	89	22	29	5	43	1.75
31563997--31564068	36	2.0	36	89	5	110	23	26	6	43	1.79
31564333--31564902	192	3.0	190	78	6	619	25	24	14	36	1.93
31564907--31565392	210	2.3	210	81	3	541	23	21	15	39	1.91
31565455--31565504	18	2.8	18	87	0	64	24	26	10	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31565495--31565529	18	1.9	18	88	0	52	22	14	17	45	1.84
31567425--31568698	213	6.0	213	95	0	2217	26	25	16	31	1.96
31568987--31569031	18	2.5	18	81	0	54	26	31	8	33	1.87
31568843--31570160	198	6.7	198	90	2	1866	26	27	15	31	1.95
31569185--31569229	18	2.5	18	77	0	54	28	28	8	33	1.87
31569391--31569425	18	1.9	18	88	0	52	28	31	11	28	1.92
31569576--31569623	18	2.7	18	80	0	60	25	29	12	33	1.92
31569812--31570160	180	1.9	180	92	1	583	23	28	16	31	1.96
31570026--31570313	153	1.9	153	91	1	479	23	28	16	31	1.96
31570179--31570759	198	2.9	198	87	1	835	26	29	13	30	1.94
31570523--31570563	18	2.3	18	87	8	57	19	34	14	31	1.92
31580154--31580323	43	3.9	44	77	9	188	26	25	11	37	1.89
31580131--31580324	87	2.3	85	80	7	214	27	24	11	36	1.90
31587362--31587390	2	14.5	2	100	0	58	51	0	0	48	1.00
31587390--31587415	2	13.0	2	100	0	52	50	0	50	0	1.00
31587620--31587664	19	2.4	19	81	7	56	37	0	4	57	1.19
31588467--31588496	15	1.9	16	93	6	53	20	13	0	66	1.24
31588438--31588522	22	3.8	22	78	10	66	16	12	2	68	1.31
31588476--31588522	22	2.2	22	92	3	78	17	8	2	72	1.19
31590263--31590335	28	2.6	29	78	14	89	56	2	1	39	1.22
31592813--31592845	10	3.4	10	87	8	50	33	0	0	66	0.92
31592825--31592857	16	2.0	17	88	5	50	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31598248--31598285	17	2.2	18	85	4	51	34	0	5	60	1.19
31599470--31599524	28	2.0	28	92	7	94	38	5	5	50	1.48
31599797--31599835	18	2.2	18	86	9	53	43	0	2	53	1.14
31600489--31600546	23	2.5	23	77	5	64	43	3	1	51	1.28
31600565--31600610	22	2.3	19	88	11	65	45	0	2	52	1.13
31600726--31600760	17	2.1	17	88	0	52	60	0	0	40	0.97
31601627--31601697	33	2.2	33	97	0	133	26	21	14	38	1.91
31606208--31606270	21	3.2	20	77	20	62	36	0	3	60	1.13
31614860--31614910	25	2.0	25	100	0	102	23	37	7	31	1.83
31626584--31626707	23	5.5	22	81	5	97	40	25	22	12	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126