genome.fa.s1.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  44  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13099682--13099733	11	4.7	11	82	0	68	21	28	34	15	1.94
13099840--13099887	24	2.0	25	87	4	71	22	0	29	47	1.51
13102736--13102800	31	2.2	31	91	5	107	52	1	0	46	1.10
13102747--13102807	30	2.0	30	90	6	97	50	0	0	49	1.00
13103004--13103059	28	2.0	28	100	0	112	14	25	17	42	1.87
13103967--13104016	20	2.4	22	90	6	77	50	0	0	50	1.00
13107033--13107104	29	2.4	29	93	2	117	47	1	0	51	1.09
13107066--13107107	20	2.0	22	90	9	70	52	0	0	47	1.00
13107057--13107113	20	3.0	20	74	23	59	47	1	0	50	1.11
13107954--13107992	12	3.2	12	81	0	51	30	2	0	66	1.05
13111286--13111361	31	2.5	31	80	0	80	40	13	13	32	1.83
13114769--13114837	18	3.9	17	75	16	61	59	0	1	39	1.06
13114947--13114971	13	1.9	13	100	0	50	64	0	0	36	0.94
13119549--13119591	21	2.0	21	100	0	86	32	9	13	44	1.76
13119911--13119978	31	2.2	31	81	5	84	45	7	5	41	1.56
13122732--13122780	21	2.3	21	82	6	64	12	32	26	28	1.92
13122767--13122875	42	2.6	42	78	11	107	15	30	22	32	1.95
13124518--13124546	14	2.0	15	93	6	51	37	20	6	34	1.80
13124574--13124657	35	2.6	31	77	14	96	33	20	8	38	1.82
13129793--13129836	21	2.1	21	82	0	52	18	6	4	70	1.27
13141391--13141423	15	2.2	15	94	0	57	3	27	0	69	1.03
13146008--13146053	25	1.9	25	86	8	69	32	4	6	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13154119--13154167	23	2.1	23	88	7	73	46	0	2	51	1.12
13157163--13157197	3	11.7	3	100	0	70	65	0	0	34	0.93
13162228--13162278	21	2.4	21	87	6	68	33	25	11	29	1.91
13169998--13170036	17	2.3	17	90	0	60	17	15	23	43	1.87
13174717--13174769	23	2.3	24	78	12	67	54	1	3	39	1.29
13178514--13178556	21	2.0	22	82	13	54	32	16	2	48	1.58
13178904--13179109	25	8.4	25	89	2	258	41	21	8	28	1.83
13178904--13179109	50	4.2	50	89	3	285	41	21	8	28	1.83
13179117--13179174	25	2.3	25	84	0	71	44	20	6	27	1.77
13181552--13181596	5	8.8	5	86	13	65	17	2	2	77	0.97
13181536--13181614	26	2.9	26	85	9	88	20	5	5	69	1.27
13181554--13181592	21	1.9	20	94	5	69	15	2	2	79	0.95
13186068--13186128	31	2.0	31	83	0	77	52	3	14	29	1.58
13193135--13193427	146	2.0	146	100	0	586	25	21	13	38	1.91
13196771--13196798	2	14.0	2	100	0	56	0	0	50	50	1.00
13200115--13200173	18	3.4	17	68	17	50	30	5	11	52	1.59
13200120--13200233	34	3.4	33	86	4	147	27	7	14	50	1.71
13200209--13200313	55	1.9	55	88	0	156	28	7	15	48	1.72
13201386--13201410	3	8.3	3	100	0	50	32	0	0	68	0.90
13205899--13205958	17	3.5	17	71	8	59	31	26	25	16	1.96
13210508--13210602	34	2.8	34	75	12	86	23	18	24	33	1.97
13212455--13212504	20	2.4	21	81	15	52	48	0	10	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13219679--13219728	20	2.4	21	81	15	52	48	0	10	42	1.37
13226194--13226553	177	2.0	177	97	0	684	25	14	17	43	1.87
13234205--13234245	15	2.7	15	96	0	73	51	9	34	4	1.56
13238567--13238650	42	2.0	42	85	0	114	28	15	27	28	1.96
13240541--13240575	6	5.8	6	96	0	61	51	11	20	17	1.75
13241547--13241579	15	2.2	15	89	10	50	21	6	0	72	1.05
13243596--13243653	21	2.8	21	81	5	73	27	17	20	34	1.95
13247353--13247405	26	2.0	26	85	10	72	45	0	1	52	1.11
13263490--13263524	14	2.5	14	100	0	70	34	22	14	28	1.93
13266978--13267094	59	2.0	60	93	1	200	29	18	16	35	1.93
13268469--13268567	46	2.2	46	100	0	198	28	22	10	39	1.86
13269481--13269557	21	3.7	21	78	0	82	32	25	11	29	1.91
13276660--13276716	29	2.0	29	83	13	73	42	3	0	54	1.17
13282351--13282390	21	1.9	21	84	0	53	25	2	7	65	1.32
13282363--13282414	27	1.9	27	88	0	77	21	1	13	63	1.39
13286016--13286061	24	1.9	24	86	8	67	6	34	0	58	1.24
13289994--13290202	104	2.0	104	91	0	337	31	17	22	28	1.96
13298272--13298443	72	2.4	71	84	3	231	29	11	23	36	1.89
13298270--13298446	36	5.0	36	81	3	207	29	10	23	35	1.89
13298936--13299059	23	5.4	23	78	3	124	37	5	14	41	1.69
13309639--13309680	22	1.9	22	85	0	57	40	21	28	9	1.84
13319613--13319671	24	2.5	24	91	0	100	22	22	25	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13324883--13324937	21	2.7	20	80	5	65	49	9	14	27	1.73
13324883--13324941	20	2.9	20	82	5	73	50	8	15	25	1.71
13335694--13335747	21	2.7	20	91	2	90	66	14	5	12	1.41
13338029--13338156	65	2.0	65	84	3	168	35	8	18	37	1.82
13338528--13338575	11	4.4	11	82	15	55	52	0	0	47	1.00
13338537--13338613	40	1.9	40	84	5	102	49	2	0	48	1.15
13343333--13343375	18	2.4	18	88	7	61	46	0	0	53	1.00
13344815--13344853	9	4.3	9	90	0	60	7	2	33	56	1.41
13351006--13351039	17	2.0	17	100	0	68	29	29	11	29	1.92
13353972--13354018	23	2.0	23	95	0	85	46	31	8	12	1.72
13358615--13358693	28	2.8	28	80	0	77	37	16	25	20	1.93
13358644--13358702	28	2.1	28	87	0	82	33	16	28	20	1.95
13358798--13358843	24	1.9	24	81	0	56	34	8	10	45	1.70
13373396--13373436	20	2.0	20	86	9	57	43	34	2	19	1.64
13373453--13373514	28	2.2	27	83	11	72	40	37	3	19	1.68
13382051--13382098	18	2.7	17	71	9	51	20	29	20	29	1.98
13382129--13382221	31	3.0	31	88	1	123	22	19	18	39	1.92
13382155--13382215	18	3.3	19	75	9	54	21	16	19	42	1.89
13383246--13383281	17	2.1	17	89	0	54	30	8	2	58	1.42
13386956--13386995	19	2.2	18	86	4	53	55	2	0	42	1.13
13387400--13387482	41	2.0	41	95	0	148	42	7	3	46	1.48
13390653--13390862	112	1.9	111	83	1	276	42	15	13	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13394133--13394170	5	7.6	5	82	11	51	78	2	2	15	0.97
13394144--13394171	14	2.0	14	100	0	56	78	0	0	21	0.75
13394133--13394170	9	3.8	10	86	10	51	78	2	2	15	0.97
13395618--13395678	28	2.2	29	85	5	81	14	8	0	77	0.99
13398616--13398681	29	2.2	30	89	5	107	3	16	9	71	1.25
13402725--13402832	23	4.5	24	79	9	114	42	22	23	12	1.86
13414475--13414539	5	13.2	5	72	23	50	23	0	18	58	1.39
13414472--13414575	36	2.9	36	77	18	101	21	0	16	62	1.32
13417346--13417375	13	2.3	13	94	0	51	10	0	30	60	1.30
13418883--13418929	3	15.7	3	95	0	85	63	0	2	34	1.06
13426202--13426279	40	2.0	40	84	0	102	50	20	12	16	1.78
13430631--13430734	23	4.3	26	73	16	82	11	25	19	43	1.84
13430611--13430730	46	2.6	46	76	12	120	13	25	19	42	1.87
13436139--13436170	6	5.3	6	100	0	64	50	0	34	15	1.45
13436472--13436556	29	2.9	29	80	7	82	45	10	10	32	1.73
13437041--13437247	58	3.6	55	77	9	184	30	23	15	29	1.96
13447143--13447187	18	2.5	19	89	7	67	55	2	13	28	1.50
13447234--13447305	36	2.0	37	86	8	103	48	6	4	40	1.49
13447294--13447360	24	2.8	24	86	2	80	47	2	7	41	1.47
13447472--13447530	23	2.5	24	81	5	77	44	3	6	45	1.47
13447466--13447551	17	4.9	17	71	4	64	47	3	8	40	1.50
13447515--13447571	24	2.4	23	85	2	78	50	3	10	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13448016--13448091	20	3.7	20	76	15	57	63	3	0	32	1.13
13448038--13448092	30	1.9	28	82	17	69	65	3	0	30	1.10
13448055--13448093	20	2.0	20	94	0	69	64	5	0	30	1.15
13448233--13448276	16	2.8	16	92	0	70	54	6	0	38	1.27
13448358--13448388	16	1.9	16	93	0	53	61	0	0	38	0.96
13448355--13448398	20	2.2	20	88	12	63	65	0	0	34	0.93
13448565--13448611	16	2.8	17	80	6	60	55	6	2	36	1.37
13449858--13450012	9	14.8	10	65	23	52	30	5	3	60	1.34
13449868--13450014	11	13.7	11	65	23	64	30	4	3	61	1.33
13449868--13450014	20	6.9	20	70	19	84	30	4	3	61	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126