genome.fa.s1.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  124  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37044676--37044710	18	1.9	18	94	0	61	37	11	31	20	1.88
37057292--37057346	19	2.8	19	86	10	67	67	5	0	27	1.12
37070108--37070164	29	2.1	28	87	9	82	35	8	3	52	1.50
37070272--37070335	13	4.9	13	76	0	65	37	6	17	39	1.75
37070274--37070337	26	2.5	26	84	0	83	39	6	15	39	1.73
37070696--37070735	20	2.0	20	85	9	55	35	0	5	60	1.19
37070908--37070939	16	1.9	17	93	6	57	37	9	3	50	1.51
37073122--37073190	33	2.1	34	82	12	92	50	10	10	28	1.68
37073130--37073191	33	1.9	31	90	6	97	51	11	11	25	1.71
37075921--37076134	115	1.9	114	90	3	340	40	17	13	28	1.87
37082056--37082193	57	2.4	58	76	9	142	32	10	10	45	1.74
37082071--37082192	58	2.1	58	81	4	140	31	10	10	46	1.73
37085412--37085456	21	2.1	21	83	0	54	60	2	0	37	1.09
37085420--37085466	21	2.4	19	77	16	51	57	2	0	40	1.11
37089564--37089606	21	2.0	21	86	0	59	18	30	2	48	1.60
37094175--37094298	63	1.9	66	90	6	200	25	25	12	36	1.92
37094539--37094580	3	14.0	3	100	0	84	33	0	0	66	0.92
37100692--37100757	31	2.1	31	88	0	96	48	15	10	25	1.77
37102437--37102503	27	2.5	27	87	0	89	26	4	31	37	1.77
37107223--37107481	41	6.3	41	75	5	184	33	18	25	21	1.96
37111700--37111740	21	1.9	22	85	5	57	29	9	7	53	1.60
37113449--37113492	22	2.0	23	81	4	54	9	4	13	72	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37113138--37114002	195	4.5	192	83	5	845	26	7	22	43	1.80
37116698--37116736	19	2.1	19	100	0	78	35	5	15	43	1.69
37119943--37119976	2	17.0	2	100	0	68	50	0	0	50	1.00
37124060--37124087	2	14.0	2	100	0	56	50	0	50	0	1.00
37130955--37130979	12	2.1	12	100	0	50	36	0	0	64	0.94
37130951--37130989	18	2.1	19	86	13	55	33	0	2	64	1.08
37131494--37131551	23	2.5	23	91	0	89	34	8	12	44	1.72
37133590--37133637	8	5.9	9	95	4	61	29	0	22	47	1.51
37133599--37133637	4	9.8	4	100	0	78	25	0	23	51	1.49
37133591--37133676	12	6.6	13	76	16	72	27	3	25	43	1.71
37138517--37138552	2	18.0	2	100	0	72	50	0	0	50	1.00
37141112--37141143	16	2.0	16	100	0	64	50	12	18	18	1.78
37141930--37141983	26	2.1	26	96	0	99	64	7	11	16	1.47
37153227--37153261	17	2.1	17	100	0	70	22	22	11	42	1.85
37156685--37156931	122	2.0	123	92	0	406	39	18	11	30	1.86
37173019--37173048	4	7.5	4	100	0	60	26	0	23	50	1.50
37173342--37173482	30	4.7	30	69	18	98	41	13	4	40	1.66
37174417--37174482	33	2.0	33	88	5	98	28	39	16	15	1.89
37174587--37174614	6	4.7	6	100	0	56	17	64	0	17	1.30
37179463--37179521	29	2.0	30	90	3	93	50	15	5	28	1.65
37184352--37184394	17	2.4	18	80	7	52	72	2	2	23	1.08
37186279--37186470	91	2.1	93	76	16	211	22	10	14	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37186372--37186564	106	1.8	106	89	0	305	23	10	15	50	1.75
37186445--37186706	137	1.9	138	83	6	343	25	13	14	46	1.81
37186644--37186827	86	2.1	86	83	7	226	20	11	14	53	1.71
37190473--37190559	30	2.9	31	84	5	115	32	1	27	39	1.64
37190553--37190621	28	2.4	29	83	4	79	40	5	20	33	1.76
37192450--37192503	27	1.9	29	85	7	76	42	1	7	48	1.42
37193206--37193257	2	26.0	2	100	0	104	0	50	0	50	1.00
37193468--37193711	96	2.5	96	72	17	243	23	10	12	52	1.70
37197175--37197199	11	2.3	11	100	0	50	76	0	8	16	1.02
37198984--37199075	43	2.1	43	88	4	132	44	6	7	41	1.59
37223116--37223145	15	1.9	16	93	6	53	40	0	6	53	1.27
37225799--37225840	20	2.1	20	86	8	59	28	9	14	47	1.75
37228525--37228568	2	22.0	2	100	0	88	50	0	0	50	1.00
37236918--37236988	31	2.3	31	87	4	99	53	7	11	28	1.62
37246050--37246081	6	5.3	6	100	0	64	15	34	0	50	1.45
37246336--37246366	14	2.2	14	94	0	53	51	0	0	48	1.00
37246497--37246565	29	2.3	29	85	5	84	46	15	18	18	1.84
37250594--37250637	16	2.8	16	79	3	54	45	4	4	45	1.44
37250860--37250905	23	2.0	23	100	0	92	60	4	13	21	1.49
37252627--37252698	22	3.2	21	71	27	51	40	8	1	50	1.41
37267191--37267218	11	2.5	11	100	0	56	78	0	0	21	0.75
37267174--37267221	21	2.3	21	82	17	64	72	0	0	27	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37267681--37267708	11	2.5	11	100	0	56	78	0	0	21	0.75
37267664--37267711	21	2.3	21	82	17	64	72	0	0	27	0.84
37268171--37268198	11	2.5	11	100	0	56	78	0	0	21	0.75
37268154--37268201	21	2.3	21	82	17	64	72	0	0	27	0.84
37268660--37268687	11	2.5	11	100	0	56	78	0	0	21	0.75
37268643--37268690	21	2.3	21	82	17	64	72	0	0	27	0.84
37267059--37269030	490	4.0	490	99	0	3910	45	9	10	34	1.71
37269833--37269868	17	2.1	17	100	0	72	22	19	11	47	1.80
37272579--37272615	19	1.9	19	88	0	56	24	5	0	70	1.08
37273107--37273173	12	5.6	12	83	0	80	7	5	17	68	1.34
37273339--37273420	26	2.9	27	80	10	85	31	0	2	65	1.05
37277084--37277108	7	3.6	7	100	0	50	88	0	12	0	0.53
37279258--37279344	43	2.0	43	95	0	156	32	8	12	47	1.71
37279910--37279958	22	2.2	22	82	7	55	44	10	10	34	1.72
37280256--37280289	7	4.9	7	100	0	68	14	0	0	85	0.60
37280256--37280296	21	2.0	21	85	0	55	19	0	2	78	0.87
37280409--37280558	75	2.0	75	92	0	246	22	17	26	34	1.96
37280598--37280649	14	3.6	14	75	14	52	30	1	5	61	1.30
37280604--37280669	31	2.2	31	86	5	91	28	6	7	57	1.50
37281821--37282205	192	2.0	194	85	5	530	42	11	6	39	1.67
37281850--37282249	195	2.1	189	80	9	427	44	10	7	37	1.67
37287840--37287936	29	3.3	30	70	7	83	46	13	12	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37288396--37288466	36	2.0	37	83	8	94	42	0	0	57	0.98
37288429--37288478	24	2.1	24	81	7	57	42	0	0	58	0.98
37288435--37288476	22	1.9	22	85	0	57	40	0	0	59	0.97
37292922--37292967	9	5.1	9	82	10	58	36	0	0	63	0.95
37292925--37292967	17	2.4	19	80	11	54	34	0	0	65	0.93
37292921--37292975	27	2.0	27	86	6	76	38	0	0	61	0.96
37295548--37295730	90	2.0	90	100	0	366	33	16	10	38	1.84
37301335--37301366	4	8.0	4	100	0	64	25	0	25	50	1.50
37306977--37307060	34	2.4	34	92	5	134	48	2	19	29	1.61
37308431--37308484	16	3.6	16	78	14	53	57	3	0	38	1.17
37310550--37310586	16	2.3	16	90	0	56	29	2	5	62	1.31
37310645--37310709	30	2.1	30	85	8	85	41	1	9	47	1.45
37311497--37311534	18	2.0	20	85	10	53	34	21	13	31	1.91
37322935--37322959	12	2.1	12	100	0	50	76	8	0	16	1.02
37324632--37324687	3	18.7	3	81	0	67	30	33	1	33	1.68
37330101--37330154	21	2.6	21	82	5	65	64	9	0	25	1.23
37368434--37368461	5	5.6	5	100	0	56	17	0	21	60	1.36
37373462--37373505	23	1.9	23	90	0	70	59	4	0	36	1.18
37373566--37373601	18	1.9	19	94	5	65	55	0	0	44	0.99
37375510--37375892	158	2.5	156	83	5	456	40	16	12	30	1.86
37384320--37384347	4	7.0	4	100	0	56	75	0	0	25	0.81
37388020--37388060	20	2.0	21	85	4	57	24	4	29	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37394269--37394311	15	2.9	15	82	0	50	41	0	0	58	0.98
37399560--37399604	6	7.5	6	89	0	63	46	0	31	22	1.52
37409501--37409547	23	2.0	24	83	4	60	65	0	0	34	0.93
37420915--37420949	17	1.9	19	88	11	56	34	11	2	51	1.53
37430056--37430089	15	2.3	15	94	0	59	20	23	26	29	1.99
37430999--37431066	21	3.2	21	68	13	50	52	0	4	42	1.21
37431168--37431220	25	2.0	26	82	7	63	37	0	3	58	1.16
37432600--37432665	29	2.2	28	79	10	69	30	13	6	50	1.66
37434475--37434524	22	2.3	22	89	0	73	40	14	16	30	1.87
37443111--37443147	17	2.1	18	85	14	51	37	0	0	62	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126