genome.fa.s1.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  99  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30130695--30130868	60	2.9	59	79	9	167	39	18	3	38	1.68
30130775--30130890	60	1.9	59	82	5	144	37	21	5	35	1.76
30131246--30131451	104	2.0	103	85	0	277	30	12	19	37	1.88
30137436--30137468	3	11.0	3	100	0	66	33	0	0	66	0.92
30138757--30138786	12	2.5	12	88	0	51	66	6	23	3	1.30
30139033--30139142	55	2.0	55	90	0	175	16	26	21	35	1.94
30141591--30141617	6	4.5	6	100	0	54	70	14	0	14	1.17
30141800--30141958	69	2.3	68	79	3	156	42	10	30	16	1.83
30143814--30143868	2	27.5	2	96	0	101	50	0	0	49	1.00
30145996--30146068	24	3.2	23	78	9	78	65	0	1	32	1.01
30150733--30150865	70	1.9	67	89	4	203	33	12	11	42	1.78
30153267--30153291	11	2.3	11	100	0	50	76	0	8	16	1.02
30153307--30153353	6	8.8	5	88	11	51	19	4	0	76	0.95
30153311--30153353	17	2.5	17	88	7	61	18	4	0	76	0.95
30153307--30153358	22	2.4	21	84	6	68	21	3	0	75	0.97
30154293--30154334	12	3.4	12	87	6	57	71	2	9	16	1.23
30154293--30154335	13	3.4	13	84	12	54	72	2	9	16	1.21
30155367--30155412	25	1.9	25	86	8	69	36	4	4	54	1.40
30156758--30156816	28	2.1	27	84	9	75	18	20	32	28	1.96
30158649--30158823	38	4.6	38	85	0	217	33	18	18	30	1.95
30161449--30161498	10	4.5	11	80	19	52	54	2	0	44	1.11
30162727--30162761	11	3.1	11	91	4	52	17	17	2	62	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30164646--30164697	24	2.1	25	82	10	63	1	36	1	59	1.19
30168255--30168634	30	12.7	30	78	7	310	35	23	2	38	1.68
30168272--30168635	59	6.1	59	78	7	333	34	23	2	39	1.67
30168439--30168662	30	7.5	30	77	13	96	36	26	0	35	1.63
30168619--30168690	28	2.5	28	86	2	90	37	29	4	29	1.76
30176060--30176428	39	9.5	37	68	16	160	24	30	19	25	1.98
30176021--30176486	78	6.0	77	79	5	445	25	30	19	25	1.98
30176021--30176479	233	2.0	234	84	3	602	25	30	19	25	1.98
30178789--30179012	30	7.5	29	73	16	142	34	27	1	36	1.68
30178811--30179061	30	8.4	30	73	17	125	35	27	1	35	1.65
30178797--30179034	60	4.0	58	73	17	184	34	27	1	36	1.65
30197503--30197535	18	1.9	17	88	11	50	54	0	0	45	0.99
30197551--30197596	16	2.9	16	81	12	51	60	2	0	36	1.09
30197551--30197583	17	2.0	17	88	5	50	60	0	0	39	0.97
30197611--30197664	24	2.2	25	90	3	83	50	9	1	38	1.45
30200488--30200533	24	1.9	24	82	8	58	52	2	2	43	1.25
30203073--30203146	30	2.5	30	100	0	148	37	6	29	25	1.82
30203926--30203976	22	2.3	22	96	0	93	23	21	27	27	1.99
30207557--30207632	34	2.2	35	81	9	93	30	1	10	57	1.40
30214027--30214067	20	2.1	20	82	13	50	68	4	2	24	1.22
30219138--30219173	16	2.2	16	90	0	54	33	25	16	25	1.96
30220826--30220872	24	2.0	24	87	8	69	38	6	8	46	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30224413--30224462	26	1.9	26	87	0	73	34	6	10	50	1.60
30224425--30224473	24	2.0	26	84	8	66	34	6	10	48	1.62
30227741--30227765	13	1.9	13	100	0	50	40	16	4	40	1.67
30230625--30230674	2	25.0	2	100	0	100	50	0	0	50	1.00
30232025--30232075	14	3.6	14	79	10	59	29	7	31	31	1.86
30232012--30232075	28	2.3	28	83	5	76	31	9	28	31	1.88
30232810--30232862	19	2.8	18	83	16	63	3	26	0	69	1.05
30232817--30232863	16	2.8	16	75	18	51	4	27	0	68	1.08
30233801--30233851	21	2.4	22	70	6	52	41	17	15	25	1.89
30234517--30234558	3	13.7	3	90	5	66	66	0	2	30	1.04
30234939--30234966	2	14.0	2	100	0	56	50	0	0	50	1.00
30235648--30235697	7	7.3	7	81	4	57	40	26	20	14	1.90
30235648--30235697	14	3.6	14	83	5	66	40	26	20	14	1.90
30235660--30235708	20	2.5	20	96	0	89	34	26	20	18	1.95
30236206--30236263	17	3.4	16	72	23	55	68	0	27	3	1.05
30236201--30236242	22	1.9	22	85	0	57	69	0	23	7	1.13
30241651--30241698	3	15.7	3	91	4	78	66	0	2	31	1.03
30242769--30242828	20	3.0	20	78	9	77	41	25	18	15	1.89
30242766--30242828	13	4.8	14	84	7	71	44	23	17	14	1.85
30243317--30243364	12	4.0	12	76	10	53	70	0	25	4	1.04
30243311--30243364	24	2.3	24	84	9	67	68	0	27	3	1.06
30243822--30243875	28	1.9	28	96	0	99	29	31	9	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30243850--30243948	36	2.8	36	92	3	155	24	25	15	35	1.94
30247623--30247662	5	8.0	5	97	0	71	0	57	0	42	0.98
30255988--30256029	21	2.0	20	86	4	57	14	11	7	66	1.43
30255987--30256029	22	2.0	22	86	8	63	13	11	6	67	1.41
30256173--30256236	32	2.0	32	87	3	92	70	4	3	21	1.20
30256445--30256499	27	2.0	27	86	6	76	43	0	10	45	1.39
30257476--30257507	3	10.7	3	100	0	64	65	0	0	34	0.93
30257506--30257552	3	15.7	3	100	0	94	34	0	0	65	0.93
30257911--30258135	113	2.0	113	89	0	342	30	13	20	35	1.91
30260994--30261058	28	2.3	28	89	0	94	49	24	12	13	1.77
30261006--30261060	28	2.0	28	96	0	101	47	23	12	16	1.81
30261128--30261220	28	3.4	28	87	1	134	31	24	20	23	1.98
30267445--30267476	15	2.0	17	88	11	50	53	0	0	46	1.00
30273189--30273767	287	2.0	288	96	0	1070	24	17	16	41	1.89
30283650--30283694	11	4.1	11	91	0	72	11	8	46	33	1.70
30283656--30283697	22	1.9	22	100	0	84	11	4	47	35	1.61
30284169--30284585	49	8.6	47	74	12	306	16	25	19	38	1.92
30284151--30284336	97	1.9	97	89	0	291	16	23	22	38	1.93
30284324--30284585	98	2.7	98	89	3	393	17	26	17	38	1.92
30284172--30284486	147	2.2	146	84	2	409	16	24	19	39	1.92
30297974--30298013	11	3.1	14	75	20	50	15	7	45	32	1.74
30302179--30302306	38	3.5	39	70	24	125	53	1	24	21	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30302169--30302312	71	2.0	71	95	2	263	48	2	23	25	1.62
30302169--30302280	33	3.2	33	71	24	113	45	1	24	28	1.63
30309032--30309088	21	2.8	20	77	17	62	43	0	5	50	1.24
30309097--30309150	24	2.3	24	80	3	65	51	0	1	46	1.11
30312054--30312161	54	2.0	54	98	0	207	38	12	7	41	1.70
30312055--30312141	28	3.2	28	63	12	72	41	11	6	40	1.68
30314316--30314749	30	14.8	29	79	7	328	39	2	22	35	1.67
30314316--30314771	59	7.7	58	80	8	404	39	2	22	35	1.67
30316572--30316693	48	2.5	48	93	0	199	27	26	11	35	1.91
30316619--30317188	207	2.7	209	84	2	673	23	20	17	38	1.93
30317198--30317321	38	3.2	38	76	4	122	23	21	20	34	1.96
30318176--30318255	41	1.9	42	87	2	117	18	23	13	43	1.86
30324461--30324515	24	2.3	24	77	20	62	16	20	10	52	1.73
30328368--30328788	29	14.3	28	76	9	299	38	2	23	35	1.68
30328370--30328788	60	7.1	58	75	9	300	38	2	23	35	1.68
30330983--30331018	18	2.0	18	89	10	56	33	0	2	63	1.08
30334789--30334822	6	5.7	6	85	0	50	44	0	52	2	1.16
30344828--30344913	19	4.4	20	69	17	74	51	2	8	38	1.45
30346573--30346748	77	2.3	77	83	5	205	36	15	2	44	1.62
30346730--30346814	33	2.6	33	73	14	86	34	20	5	40	1.76
30348738--30348792	22	2.5	22	79	5	67	36	10	20	32	1.87
30348959--30349029	27	2.6	27	86	2	97	16	15	32	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30353702--30353743	19	2.0	20	86	13	59	69	2	2	26	1.13
30354796--30354858	26	2.4	26	94	0	108	55	11	15	17	1.68
30355038--30355082	23	1.9	24	86	4	65	37	2	4	55	1.32
30360711--30360749	20	2.0	19	85	5	51	35	5	7	51	1.53
30375982--30376018	19	2.0	19	89	5	58	67	5	2	24	1.25
30376004--30376083	10	8.4	9	71	14	54	56	2	2	38	1.26
30376001--30376056	19	2.8	20	81	5	60	58	1	3	35	1.26
30377374--30377403	13	2.3	13	94	0	51	23	56	10	10	1.62
30379078--30379331	29	8.7	29	75	9	194	37	25	2	33	1.71
30379044--30379331	59	4.9	58	79	5	269	36	26	3	33	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126