genome.fa.s1.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  14  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4622596--4622760	56	2.9	56	82	1	197	33	7	11	47	1.67
4625499--4625532	16	2.1	16	88	0	50	73	0	0	26	0.83
4625497--4625538	9	4.8	9	77	16	52	71	0	0	28	0.86
4627957--4628004	10	4.6	10	78	17	53	62	2	2	33	1.18
4628958--4628986	15	1.9	15	100	0	58	13	0	10	75	1.04
4628961--4628995	15	2.3	15	90	0	52	20	0	5	74	1.02
4629015--4629073	21	2.8	21	75	17	59	61	1	5	32	1.28
4629474--4629498	13	1.9	13	100	0	50	56	8	8	28	1.57
4637243--4637337	23	4.0	23	76	10	86	40	21	26	12	1.89
4643233--4643327	26	3.5	26	65	21	70	38	12	14	33	1.84
4643234--4643353	56	2.1	56	90	4	188	39	11	14	35	1.82
4643520--4643565	21	2.2	21	100	0	92	21	0	19	58	1.39
4643719--4643755	18	2.1	18	89	0	56	48	0	27	24	1.51
4648836--4648879	23	2.0	22	86	4	61	63	4	0	31	1.14
4648857--4648911	27	1.9	30	85	10	80	58	3	5	32	1.38
4649937--4649989	23	2.3	23	78	12	56	58	1	1	37	1.20
4649939--4650007	21	3.2	21	75	19	70	60	1	2	34	1.20
4650439--4650500	30	2.1	30	96	0	115	41	9	8	40	1.67
4652798--4653074	138	2.0	138	99	0	545	36	10	11	41	1.76
4653064--4653141	39	2.0	39	97	0	147	17	21	25	34	1.96
4655242--4655346	9	11.4	9	69	17	65	30	1	1	65	1.14
4655270--4655339	20	3.7	20	71	24	71	31	0	1	67	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4655269--4655354	36	2.4	37	79	18	92	30	0	2	67	1.03
4655273--4655346	28	2.7	25	74	15	67	32	0	1	66	1.00
4655273--4655341	19	3.7	19	69	20	56	34	0	1	63	1.03
4655251--4655414	9	17.6	9	67	22	56	29	0	3	66	1.13
4655331--4655415	24	3.5	24	72	10	66	27	0	4	68	1.09
4656783--4656884	22	4.5	22	88	2	123	36	27	22	13	1.92
4656780--4656900	22	5.4	22	82	6	109	38	24	23	13	1.90
4658572--4658623	19	2.7	19	96	0	95	11	44	21	23	1.84
4658864--4658897	17	2.0	17	94	0	59	44	0	2	52	1.16
4660062--4660107	21	2.2	21	96	0	83	34	10	13	41	1.79
4662243--4662318	26	2.8	26	78	4	71	57	7	1	32	1.36
4665663--4665695	6	5.5	6	92	0	57	48	0	30	21	1.50
4665659--4665716	24	2.5	23	86	8	73	48	0	24	27	1.51
4665798--4665897	38	2.5	40	74	11	107	23	20	27	30	1.98
4665823--4665901	37	2.1	38	83	2	97	22	20	25	31	1.98
4667993--4668029	10	3.8	10	89	3	58	24	0	0	75	0.80
4668093--4668143	15	3.6	13	76	23	50	62	1	0	35	1.06
4669319--4669399	27	3.0	27	83	0	99	20	32	29	17	1.96
4670555--4670592	18	2.2	18	85	4	51	42	15	18	23	1.89
4672351--4672376	13	2.0	13	100	0	52	38	7	23	30	1.83
4679900--4679931	17	1.9	16	93	6	55	56	3	15	25	1.54
4682328--4682352	3	8.3	3	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4693547--4693611	30	2.2	30	97	0	121	26	3	12	58	1.49
4694951--4694990	20	1.9	22	90	10	66	62	0	0	37	0.95
4695209--4695270	19	3.4	19	78	13	85	46	11	1	40	1.49
4697878--4697930	2	26.5	2	100	0	106	50	0	0	49	1.00
4712041--4712117	33	2.3	34	95	4	140	23	38	0	37	1.55
4724017--4724374	193	1.9	192	95	0	653	22	19	17	40	1.91
4726562--4726607	23	2.0	24	87	12	69	43	0	54	2	1.12
4734038--4734110	38	1.9	38	94	0	128	19	16	20	43	1.88
4734039--4734127	38	2.5	35	85	10	112	17	13	21	47	1.82
4735816--4736004	30	6.4	28	72	11	103	38	2	23	35	1.69
4735898--4736004	30	3.6	29	82	5	133	38	3	21	36	1.71
4737049--4737095	15	3.1	15	90	3	67	38	0	2	59	1.09
4737048--4737093	3	15.0	3	81	4	56	36	0	2	60	1.09
4737429--4737517	26	3.4	26	84	4	117	26	6	25	40	1.80
4737872--4737947	17	4.5	17	73	5	73	51	5	1	42	1.33
4737858--4737947	34	2.6	34	75	6	92	48	5	1	44	1.33
4738316--4739126	201	4.0	201	85	6	1083	19	22	20	37	1.95
4738997--4739022	10	2.6	10	100	0	52	7	38	19	34	1.80
4746854--4746904	27	2.0	26	92	7	86	41	3	3	50	1.39
4748474--4748537	28	2.3	27	81	2	74	25	10	18	45	1.82
4751739--4751792	28	1.9	28	96	0	99	35	14	27	22	1.93
4753976--4754315	51	6.7	51	87	3	409	31	15	22	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4753976--4754278	153	2.0	154	88	1	457	32	16	21	30	1.95
4754373--4754489	40	3.0	39	85	7	114	19	20	26	33	1.97
4754391--4754489	40	2.4	41	89	1	146	19	20	28	32	1.97
4756117--4756168	21	2.5	22	84	9	72	28	19	26	25	1.98
4757338--4757446	50	2.2	50	100	0	218	30	25	1	42	1.66
4759028--4759071	14	3.1	14	81	12	54	18	18	25	38	1.92
4759231--4759270	14	2.9	14	80	0	53	30	12	32	25	1.92
4759213--4759280	28	2.4	28	76	13	77	22	10	35	32	1.88
4781552--4781577	3	8.7	3	100	0	52	0	0	34	65	0.93
4784087--4784115	8	3.6	8	100	0	58	24	0	0	75	0.80
4789001--4789026	5	5.2	5	100	0	52	19	0	0	80	0.71
4796067--4796106	21	1.9	21	89	0	62	45	7	5	42	1.54
4812514--4812544	11	2.8	11	95	0	53	61	9	0	29	1.28
4812524--4812589	33	2.0	34	93	3	116	46	10	3	39	1.54
4820755--4820780	12	2.2	12	100	0	52	7	0	0	92	0.39
4827968--4828005	20	1.9	20	84	10	51	44	0	0	55	0.99
4828109--4828146	14	2.6	15	76	23	53	52	0	5	42	1.24
4828292--4828405	59	1.9	61	87	7	171	38	0	4	56	1.26
4828281--4828411	67	2.0	67	83	6	167	42	0	3	52	1.24
4828436--4828518	33	2.6	32	85	12	116	36	30	6	27	1.81
4835381--4835406	3	8.7	3	100	0	52	0	30	0	69	0.89
4835999--4836039	4	10.2	4	94	0	73	26	0	24	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4848208--4848245	14	2.7	14	84	8	51	78	5	0	15	0.91
4859270--4859299	12	2.5	12	94	0	51	33	6	0	60	1.23
4861148--4861190	23	1.9	22	86	13	61	81	2	11	4	0.93
4861148--4861191	11	3.8	11	80	19	54	79	2	11	6	1.01
4869492--4869521	15	1.9	16	93	6	53	0	46	0	53	1.00
4872769--4872862	46	2.0	46	95	0	170	26	26	10	36	1.89
4875608--4875669	14	4.5	13	78	11	52	40	40	8	11	1.70
4884015--4884066	23	2.3	22	87	9	70	25	11	0	63	1.28
4890359--4890404	24	1.9	24	86	8	67	30	2	0	67	1.03
4891745--4891833	42	2.1	43	83	6	110	26	11	17	43	1.83
4892568--4892632	28	2.3	30	79	15	75	26	10	10	52	1.69
4893282--4893446	59	2.7	60	88	8	246	54	1	0	44	1.07
4893323--4893416	17	6.2	17	71	21	50	51	1	0	47	1.07
4893392--4893442	17	3.0	16	78	18	50	60	1	0	37	1.08
4893411--4893458	24	2.0	24	88	8	71	64	2	0	33	1.05
4894479--4894576	48	2.0	48	98	0	187	32	10	36	20	1.86
4898010--4898083	24	3.2	23	77	14	82	50	6	35	8	1.59
4898022--4898076	21	2.8	20	89	10	87	54	3	34	7	1.46
4901592--4901660	23	3.0	23	86	0	93	42	15	23	18	1.89
4904917--4904960	3	15.3	3	81	9	56	0	27	0	72	0.85
4905290--4905376	26	3.3	26	98	0	165	67	3	10	18	1.34
4906708--4906735	13	2.2	13	100	0	56	46	7	0	46	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4911598--4911637	20	2.0	20	85	4	55	32	0	0	67	0.91
4917042--4917088	18	2.8	17	80	6	51	68	0	4	27	1.08
4917042--4917088	17	2.8	16	78	9	58	68	0	4	27	1.08
4917057--4917123	9	6.9	10	75	14	52	61	0	4	34	1.16
4924327--4924360	3	11.3	3	100	0	68	32	0	0	67	0.91
4924710--4924734	12	2.1	12	100	0	50	16	0	0	84	0.63
4924683--4924926	104	2.3	105	87	3	330	37	4	3	54	1.39
4924731--4924949	104	2.1	103	87	2	305	33	5	5	55	1.46
4946350--4946380	2	15.5	2	100	0	62	51	0	0	48	1.00
4948053--4948078	3	8.7	3	100	0	52	30	0	34	34	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126