genome.fa.s1.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  52  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15509764--15509825	27	2.3	27	85	2	79	30	20	22	25	1.98
15509798--15509844	21	2.2	21	88	0	67	31	17	25	25	1.97
15509764--15509845	7	11.9	7	70	7	51	31	18	23	26	1.97
15521640--15521673	18	1.9	17	88	5	50	47	0	0	52	1.00
15525737--15525811	24	3.1	25	88	3	102	25	24	22	28	2.00
15531007--15531047	21	2.0	21	85	9	57	29	12	0	58	1.34
15531524--15531588	29	2.2	30	86	10	98	32	24	32	10	1.90
15541836--15541889	29	2.0	26	85	10	72	66	1	22	9	1.30
15546379--15546414	18	2.1	17	89	5	54	16	8	0	75	1.04
15547103--15547146	23	1.9	23	85	0	61	25	20	15	38	1.92
15547136--15547177	21	2.0	21	81	9	50	23	23	21	30	1.99
15559342--15559387	25	1.9	23	82	8	56	54	15	17	13	1.71
15563391--15563430	18	2.2	18	86	0	53	52	32	12	2	1.52
15563399--15563444	18	2.6	18	85	0	65	52	28	13	6	1.65
15563848--15563916	18	3.6	19	75	9	77	65	5	2	26	1.29
15564677--15564725	15	3.1	15	76	21	55	44	0	0	55	0.99
15564677--15564720	17	2.5	18	82	14	56	43	0	0	56	0.99
15564758--15564794	16	2.3	16	86	13	58	40	0	0	59	0.97
15566803--15566842	16	2.4	18	80	16	50	60	5	0	35	1.19
15570016--15570089	32	2.2	31	79	18	76	25	0	10	63	1.27
15570368--15570395	5	5.6	5	100	0	56	35	0	0	64	0.94
15570983--15571022	19	2.1	19	95	0	71	42	5	15	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15572204--15572251	18	2.6	19	78	12	55	68	8	0	22	1.16
15572260--15572309	20	2.5	20	81	12	59	64	8	8	20	1.46
15572386--15572472	31	2.9	30	81	5	104	35	4	21	37	1.74
15573481--15573523	10	4.1	11	88	8	63	25	0	2	72	0.97
15573598--15573629	17	1.9	16	93	6	55	25	0	0	75	0.81
15573702--15573738	18	2.2	18	85	9	51	21	0	8	70	1.13
15573740--15573775	17	2.1	17	94	0	63	72	2	0	25	0.98
15573818--15573959	75	1.9	75	83	0	185	33	19	19	26	1.96
15574475--15574727	40	6.4	39	73	6	161	29	15	23	31	1.95
15586544--15586628	30	2.8	30	73	7	82	31	7	25	35	1.83
15587648--15587689	10	4.1	10	79	14	50	23	2	2	71	1.10
15587636--15587687	16	3.3	15	77	15	52	23	1	3	71	1.13
15589834--15589889	21	2.6	22	77	8	62	32	10	25	32	1.90
15596816--15596884	13	5.5	13	73	13	72	34	8	2	53	1.47
15596819--15596903	25	3.4	25	91	3	136	34	10	3	51	1.53
15599985--15600031	23	2.0	23	91	0	76	27	27	19	25	1.99
15604244--15604298	17	3.6	15	79	18	53	49	30	7	12	1.68
15605454--15605482	12	2.3	13	94	5	51	27	3	6	62	1.37
15605549--15605638	30	3.0	30	79	12	78	21	14	5	58	1.56
15609381--15609410	6	5.0	6	91	0	51	80	0	20	0	0.72
15610566--15610771	112	1.8	112	86	0	295	29	19	9	40	1.84
15611194--15611600	49	8.3	49	80	3	424	36	16	25	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15611194--15611600	146	2.8	147	82	3	505	36	16	25	21	1.94
15611963--15612220	43	6.0	42	83	3	291	30	25	16	28	1.96
15611963--15612220	85	3.0	85	84	3	338	30	25	16	28	1.96
15624682--15624723	17	2.4	17	96	4	75	19	28	2	50	1.60
15624662--15624709	24	2.0	24	95	0	87	20	31	0	47	1.50
15625214--15625257	15	2.9	15	80	6	52	56	2	0	40	1.11
15629823--15629875	21	2.6	20	76	8	54	58	11	7	22	1.57
15635457--15635548	39	2.4	39	83	0	103	26	30	14	29	1.95
15645701--15645745	9	5.1	9	89	2	56	0	26	2	71	0.98
15645712--15645745	3	11.3	3	93	0	59	0	29	0	70	0.87
15658454--15658487	12	2.8	12	86	4	50	79	0	20	0	0.73
15663258--15663328	27	2.7	26	86	4	81	30	26	19	22	1.98
15663280--15663328	25	1.9	26	95	4	91	30	28	16	24	1.96
15665506--15665553	14	3.4	14	74	25	55	70	2	16	10	1.24
15666512--15666584	26	2.8	26	74	2	74	28	20	28	21	1.98
15670798--15670851	28	1.9	28	88	0	81	46	25	3	24	1.69
15670805--15670913	28	3.9	27	81	11	105	42	27	5	24	1.77
15670807--15670913	56	1.9	56	88	3	162	42	28	5	23	1.76
15671301--15671361	27	2.2	28	77	11	65	27	27	18	26	1.98
15673253--15673286	18	1.9	18	88	5	52	50	2	0	47	1.16
15673725--15673763	20	1.9	21	94	5	71	69	15	0	15	1.20
15673729--15673781	27	2.0	27	88	0	79	66	16	0	16	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15673937--15673971	5	7.0	5	93	0	61	0	57	0	42	0.99
15674710--15675026	157	2.0	157	89	1	483	41	15	8	34	1.78
15676114--15676259	72	2.0	73	97	1	276	34	16	12	36	1.86
15676792--15676959	36	4.6	38	79	12	108	27	16	23	32	1.95
15676834--15676989	72	2.2	72	89	2	242	28	15	25	31	1.96
15676826--15676989	36	4.6	36	86	4	199	28	15	24	31	1.96
15680226--15680319	39	2.4	39	81	0	98	29	32	11	25	1.91
15682614--15682653	18	2.2	18	86	0	53	27	15	7	50	1.70
15683243--15683333	46	2.0	46	86	0	128	31	8	6	52	1.58
15685536--15685602	27	2.5	27	87	0	98	35	25	11	26	1.91
15693947--15693999	27	1.9	27	88	3	79	28	15	5	50	1.66
15703103--15703148	20	2.3	20	88	7	67	71	4	0	23	1.03
15703111--15703155	20	2.2	21	84	7	58	68	8	0	22	1.16
15705686--15706163	98	4.9	98	88	1	701	19	25	17	37	1.93
15705689--15706163	49	9.8	48	72	10	349	19	25	17	37	1.93
15712911--15712954	21	2.1	21	91	0	70	77	2	0	20	0.88
15724391--15724436	12	4.0	11	81	10	56	54	0	0	45	0.99
15724391--15724436	23	2.0	23	83	8	58	54	0	0	45	0.99
15726041--15726083	20	2.1	21	87	8	63	27	9	0	62	1.25
15726137--15726179	20	2.1	20	87	12	61	23	6	2	67	1.27
15726137--15726192	21	2.7	20	79	20	62	26	5	1	66	1.23
15726144--15726191	10	4.7	10	79	5	51	25	2	2	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15727038--15727101	23	3.0	23	82	11	73	70	21	1	6	1.18
15727063--15727126	18	3.3	19	86	8	85	75	17	1	6	1.09
15727064--15727132	19	3.6	19	83	13	79	73	18	1	5	1.10
15730958--15730995	19	2.0	19	100	0	76	42	10	15	31	1.81
15732010--15732055	23	2.0	23	91	8	76	28	0	0	71	0.86
15732016--15732063	22	2.1	23	84	3	62	33	0	0	66	0.92
15732440--15732494	25	2.3	25	76	17	62	40	5	3	50	1.43
15734561--15734700	71	2.0	71	90	2	219	30	24	20	25	1.98
15738297--15738341	19	2.4	18	85	10	63	22	6	24	46	1.75
15741576--15741679	41	2.5	41	93	1	172	34	12	24	28	1.92
15741699--15741841	41	3.6	41	90	2	211	44	8	22	25	1.81
15743027--15743081	18	3.1	18	74	10	58	21	18	27	32	1.96
15743929--15743971	15	2.8	16	75	10	54	23	30	16	30	1.96
15744335--15744514	82	2.2	81	84	2	225	38	16	5	40	1.70
15745168--15745328	79	2.0	81	87	2	236	38	4	17	39	1.69
15745193--15745360	79	2.1	79	81	6	178	37	6	15	40	1.73
15747569--15747625	30	1.9	30	88	0	87	17	36	14	31	1.89
15749112--15749319	90	2.3	89	85	5	269	41	19	7	31	1.79
15749416--15749504	19	4.7	19	72	12	76	67	1	5	25	1.19
15749416--15749486	20	3.7	20	73	7	65	66	1	7	25	1.25
15749452--15749563	56	2.0	57	86	8	158	63	3	2	30	1.25
15749510--15749554	21	2.1	21	84	8	56	64	4	4	26	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15749757--15749851	41	2.3	40	75	7	93	33	2	3	61	1.24
15749933--15750088	85	1.8	84	79	4	179	32	6	21	40	1.78
15750879--15750994	20	5.8	20	74	11	103	35	19	31	13	1.91
15750869--15750997	60	2.1	60	84	4	170	36	20	30	13	1.90
15750885--15750994	40	2.8	40	76	5	114	36	19	30	14	1.91
15757478--15757519	16	2.7	16	79	13	52	14	4	0	80	0.86
15762281--15762472	29	6.5	30	82	7	212	38	0	23	38	1.59
15762244--15762471	59	3.9	57	80	7	244	37	1	23	37	1.63
15762281--15762501	30	7.4	29	80	8	187	39	0	21	38	1.60
15762248--15762501	29	8.6	30	78	7	182	39	1	21	37	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126