genome.fa.s1.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  95  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29291966--29292132	86	2.0	85	83	3	210	35	15	22	25	1.94
29291897--29292522	201	3.1	201	84	3	797	35	19	22	23	1.96
29292832--29292948	6	20.2	6	68	19	70	43	0	1	53	1.16
29292832--29292928	17	5.6	17	83	8	124	41	1	2	55	1.18
29292832--29292947	17	6.4	17	75	17	90	43	0	1	53	1.16
29293178--29293233	25	2.2	25	90	0	85	19	48	10	21	1.79
29293680--29293709	10	3.0	10	95	0	51	53	0	0	46	1.00
29294825--29294935	29	3.8	29	74	16	86	36	27	6	29	1.82
29296662--29296725	31	2.2	30	83	13	80	26	7	14	51	1.69
29297713--29297746	17	1.9	18	88	5	52	38	0	2	58	1.13
29302990--29303085	29	3.2	29	86	2	111	38	8	9	43	1.67
29303012--29303102	29	3.1	29	85	3	110	39	8	9	41	1.69
29303788--29303820	11	3.1	11	82	8	50	66	0	6	27	1.15
29303782--29303833	20	2.6	21	78	6	63	57	1	3	36	1.28
29304008--29304104	29	3.3	30	74	7	90	38	5	0	56	1.22
29313554--29313618	28	2.4	27	80	10	71	66	0	1	32	1.01
29313566--29313623	20	2.5	24	76	18	70	62	0	1	36	1.06
29313518--29313596	39	2.0	39	90	0	122	68	1	5	25	1.17
29313542--29313604	20	3.2	20	79	4	74	66	1	1	30	1.10
29313584--29313647	34	1.9	33	84	9	85	60	1	1	35	1.15
29315845--29315893	24	2.0	24	100	0	98	42	0	16	40	1.48
29316157--29316191	3	11.7	3	100	0	70	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29316378--29316421	20	2.2	20	84	8	54	54	0	6	38	1.27
29316532--29316643	52	2.1	54	80	8	131	50	7	2	40	1.44
29320429--29320469	15	2.9	15	75	24	52	36	17	7	39	1.77
29326677--29326763	45	1.9	46	81	6	106	48	4	12	34	1.62
29331283--29331403	60	2.0	60	100	0	242	24	11	30	33	1.91
29332990--29333041	20	2.7	20	75	3	52	34	1	5	57	1.33
29334378--29334439	28	2.2	28	82	0	70	58	9	6	25	1.54
29336584--29336650	6	11.2	6	98	0	98	0	0	43	56	0.99
29338907--29339113	29	7.2	29	78	8	192	36	22	14	26	1.92
29338944--29339145	58	3.5	58	84	3	246	36	20	14	28	1.92
29338907--29339133	87	2.6	85	82	7	262	36	21	14	27	1.92
29338907--29339153	29	8.6	28	77	9	187	35	21	14	28	1.93
29339601--29339654	15	3.6	15	73	9	56	37	22	9	31	1.86
29341270--29341318	21	2.3	21	96	0	89	36	6	14	42	1.70
29341902--29341949	24	2.0	24	87	0	69	52	2	2	43	1.24
29344433--29344488	23	2.4	23	90	0	85	35	3	5	55	1.40
29345866--29345907	18	2.3	18	84	8	50	66	0	4	28	1.12
29347322--29347389	17	3.9	17	80	16	61	42	2	2	51	1.32
29347299--29347375	12	6.8	11	73	10	66	42	3	2	50	1.34
29347563--29347609	15	3.1	15	88	11	69	21	55	10	12	1.67
29347564--29347611	16	3.0	17	91	8	75	22	54	10	12	1.68
29347563--29347628	15	4.7	14	70	22	50	21	56	10	12	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29349190--29349409	30	7.3	30	94	1	370	37	24	3	34	1.72
29349339--29349777	59	7.5	55	79	8	322	32	28	5	34	1.79
29349403--29349777	59	6.4	59	85	1	493	31	28	5	34	1.81
29361701--29362364	68	9.8	68	92	1	1080	34	17	21	26	1.95
29361701--29362364	135	4.9	136	92	2	1118	34	17	21	26	1.95
29361701--29362348	203	3.2	203	94	1	1154	35	17	21	26	1.95
29362661--29362728	17	3.9	17	80	16	61	42	2	2	51	1.32
29362638--29362714	12	6.8	11	73	10	66	42	3	2	50	1.34
29362905--29362966	16	3.9	16	93	6	101	24	56	8	11	1.61
29364557--29364715	59	2.7	60	91	4	261	36	25	3	34	1.72
29364557--29364715	30	5.4	30	93	3	261	36	25	3	34	1.72
29364633--29365070	59	7.5	55	79	11	333	32	28	5	34	1.79
29364697--29365070	29	12.8	29	68	11	183	31	28	5	34	1.80
29364638--29365068	117	3.7	117	83	7	450	32	28	4	34	1.78
29364695--29365067	117	3.2	117	89	2	543	31	28	5	34	1.79
29364695--29365070	59	6.4	59	87	1	515	31	28	5	34	1.80
29367967--29368158	51	3.8	51	88	0	267	30	22	14	33	1.93
29395097--29395144	24	2.1	22	81	14	53	35	4	18	41	1.70
29398079--29398163	28	3.0	28	84	3	109	42	22	16	18	1.89
29398192--29398330	29	4.9	29	76	11	92	43	17	12	26	1.84
29398249--29398327	28	2.9	28	82	1	79	49	16	10	24	1.76
29400027--29400085	11	5.6	10	72	23	50	37	0	1	61	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29400047--29400084	19	2.0	20	94	5	69	42	0	0	57	0.98
29403443--29403501	21	2.7	22	79	10	59	35	23	15	25	1.94
29405810--29405885	33	2.4	32	82	8	84	19	27	31	21	1.97
29405924--29405970	15	3.2	15	75	6	51	65	0	0	34	0.93
29405943--29405988	22	2.1	23	84	15	62	60	2	0	36	1.09
29407255--29407314	19	3.0	20	83	7	70	35	5	1	58	1.30
29408972--29409105	59	2.3	59	80	3	146	38	9	11	39	1.75
29410283--29410326	24	1.9	22	86	9	61	34	2	0	63	1.07
29420136--29420227	41	2.2	42	82	7	116	18	11	30	39	1.87
29421838--29422065	120	1.9	120	89	0	357	28	24	17	30	1.97
29426106--29426166	28	2.2	28	87	0	86	19	26	18	36	1.94
29426177--29426262	33	2.7	31	84	8	111	17	17	19	45	1.86
29427728--29427779	21	2.4	22	77	3	61	69	0	1	28	0.99
29427725--29427835	20	5.7	20	70	18	58	65	0	1	32	1.03
29427767--29427827	8	6.9	8	75	17	50	65	0	1	32	1.02
29427749--29427835	28	3.1	28	79	12	90	64	0	1	34	1.01
29427749--29427832	38	2.2	38	83	6	109	63	0	1	35	1.03
29427797--29427865	27	2.5	28	81	9	79	63	0	4	31	1.14
29427738--29427907	9	17.9	10	67	19	71	62	0	2	34	1.15
29427726--29427904	19	9.4	18	67	21	82	63	0	2	32	1.13
29428491--29428533	23	1.9	22	85	4	59	51	9	0	39	1.34
29430819--29431033	76	2.8	76	87	0	295	26	18	12	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29432560--29432617	28	2.1	28	96	0	107	37	10	17	34	1.84
29438537--29438615	26	3.0	26	92	0	122	55	1	17	25	1.49
29439768--29439873	48	2.2	48	87	0	149	40	13	21	24	1.89
29439945--29440025	27	3.0	27	83	0	99	35	11	35	17	1.85
29444665--29444708	18	2.4	19	80	7	54	20	11	22	45	1.83
29445807--29445854	18	2.5	18	80	10	51	29	10	8	52	1.65
29465902--29465940	18	2.1	18	85	9	51	48	5	0	46	1.24
29466372--29466610	60	4.0	60	85	8	283	27	19	15	37	1.92
29466380--29466605	59	3.7	61	86	8	302	28	19	14	37	1.91
29470345--29470393	12	3.8	12	75	19	53	51	0	8	40	1.32
29470524--29471046	83	6.3	83	91	2	777	38	5	4	51	1.46
29470524--29471046	164	3.2	164	90	3	782	38	5	4	51	1.46
29470524--29471046	247	2.1	248	89	2	800	38	5	4	51	1.46
29473451--29473516	30	2.2	30	84	10	82	27	4	7	60	1.43
29473479--29473548	30	2.3	30	82	0	77	27	10	4	58	1.49
29474365--29474685	59	5.4	61	76	11	221	32	18	20	28	1.96
29474478--29474630	56	2.8	56	85	5	186	33	18	21	25	1.96
29474365--29474686	55	5.5	59	75	12	254	32	18	20	27	1.96
29476555--29476611	22	2.6	23	78	18	68	63	1	3	31	1.22
29476663--29476711	16	2.8	18	76	20	50	24	6	8	61	1.47
29477211--29477304	47	2.0	47	93	0	161	31	20	12	35	1.90
29478500--29478550	26	2.0	26	84	0	66	5	35	0	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29479072--29479101	14	2.1	15	93	6	53	56	0	0	43	0.99
29481383--29481416	11	3.2	11	87	8	52	76	2	0	20	0.92
29481383--29481416	10	3.3	10	91	4	50	76	2	0	20	0.92
29481795--29481870	10	7.9	9	71	12	53	31	2	2	63	1.22
29481790--29481837	19	2.4	20	82	10	62	31	4	4	60	1.35
29481795--29481900	20	5.3	19	70	13	61	33	2	3	59	1.30
29482774--29482815	16	2.5	16	88	7	57	45	0	2	52	1.13
29490860--29490900	16	2.5	15	85	14	55	63	0	0	36	0.95
29490860--29490902	17	2.5	17	85	10	61	62	0	0	37	0.95
29492689--29492750	21	2.9	22	82	4	81	29	0	20	50	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126