genome.fa.s1.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  41  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12224581--12224824	87	2.8	86	79	10	241	35	27	3	34	1.75
12224621--12224881	87	3.0	87	80	8	234	33	28	4	33	1.79
12233090--12233178	26	3.3	26	66	14	72	47	3	2	47	1.31
12236475--12236507	11	3.0	11	90	0	57	21	15	0	63	1.30
12239182--12239332	56	2.6	58	79	11	168	44	2	2	50	1.30
12239510--12239568	16	3.7	16	86	0	91	27	25	6	40	1.80
12239501--12239562	32	1.9	32	90	0	97	29	25	6	38	1.81
12239618--12239650	11	3.0	11	90	0	57	63	0	12	24	1.28
12241282--12241379	51	1.9	50	87	2	142	34	17	19	28	1.94
12241592--12241663	32	2.2	32	85	7	92	22	13	9	54	1.68
12241606--12241683	32	2.5	32	85	10	99	26	12	10	50	1.73
12241890--12242077	57	3.2	58	83	6	225	48	13	14	22	1.79
12241918--12242077	31	5.4	30	69	18	93	48	13	15	22	1.79
12242895--12242943	21	2.3	22	86	10	66	40	0	2	57	1.10
12242910--12242943	16	2.1	17	88	5	52	41	0	2	55	1.15
12244543--12244918	29	12.9	28	74	12	249	36	27	2	34	1.70
12244542--12244839	59	5.1	58	76	10	250	36	26	2	33	1.70
12246213--12246245	14	2.3	15	90	10	52	36	0	0	63	0.95
12251914--12251985	34	2.1	34	97	0	135	40	5	4	50	1.45
12253049--12253090	14	2.8	15	75	10	50	50	9	11	28	1.70
12254290--12254337	26	1.9	24	83	8	60	33	8	2	56	1.41
12254438--12254493	2	28.0	2	100	0	112	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12254515--12254583	18	4.0	17	75	17	63	62	1	0	36	1.04
12254516--12254594	35	2.2	36	86	8	108	60	1	0	37	1.05
12254537--12254590	9	6.1	9	72	20	51	59	1	0	38	1.08
12255298--12255416	20	6.0	19	66	25	52	53	0	5	39	1.31
12255299--12255360	29	2.1	30	82	8	74	59	0	1	38	1.07
12255298--12255380	39	2.2	37	82	8	96	55	0	4	39	1.21
12255547--12255613	10	6.7	10	72	16	50	65	0	4	29	1.12
12255552--12255612	19	3.2	18	77	11	59	67	0	3	29	1.07
12255552--12255613	30	2.1	29	82	8	72	67	0	3	29	1.06
12260216--12260247	5	6.4	5	100	0	64	37	0	62	0	0.95
12260466--12260504	13	3.1	12	85	10	51	66	2	2	28	1.18
12263887--12263911	12	2.1	12	100	0	50	0	60	0	40	0.97
12268605--12268828	112	2.0	112	91	0	367	42	6	17	33	1.75
12268837--12268877	20	2.0	20	90	0	64	51	2	41	4	1.36
12274150--12274182	3	11.0	3	100	0	66	33	0	0	66	0.92
12287671--12287797	28	4.6	28	83	7	145	37	21	15	25	1.93
12287671--12287802	55	2.4	55	81	9	153	38	20	15	25	1.92
12290097--12290249	56	2.8	56	86	5	204	33	19	19	27	1.96
12290098--12290249	28	5.5	28	82	3	182	33	19	19	26	1.96
12292988--12293035	20	2.4	20	86	6	62	18	2	2	77	0.97
12292988--12293034	24	1.9	25	87	12	71	19	2	2	76	0.99
12293168--12293203	3	12.0	3	93	0	63	30	0	2	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12295312--12295336	11	2.3	11	100	0	50	24	36	12	28	1.91
12296685--12296737	3	17.7	3	96	0	97	66	0	33	0	0.92
12305596--12305809	110	2.0	108	81	9	249	34	9	14	42	1.78
12310020--12310221	112	1.8	112	87	2	307	29	21	11	36	1.90
12310538--12310585	3	16.3	3	95	4	89	68	0	0	31	0.90
12311551--12311585	17	2.1	17	100	0	70	80	0	20	0	0.72
12312220--12312533	49	6.5	46	75	11	202	35	16	27	20	1.94
12312298--12312533	98	2.4	95	77	9	233	34	16	27	21	1.95
12312251--12312534	147	1.9	146	83	3	365	35	16	27	20	1.94
12312989--12313112	45	2.8	45	85	6	146	34	26	14	24	1.94
12312989--12313127	45	3.1	45	82	7	133	35	25	15	23	1.94
12314879--12314939	26	2.4	25	78	8	68	24	9	1	63	1.34
12319632--12319682	25	2.0	25	100	0	102	45	15	19	19	1.86
12320455--12320497	17	2.5	17	84	3	50	23	20	2	53	1.57
12320731--12320764	15	2.2	16	89	5	52	23	2	0	73	0.97
12320733--12320775	19	2.2	20	84	12	54	27	2	0	69	1.00
12322097--12322155	3	19.7	3	100	0	118	33	0	0	66	0.92
12324097--12324144	6	8.0	6	84	13	55	18	2	2	77	0.97
12324109--12324140	16	1.9	17	93	6	57	18	0	0	81	0.70
12324290--12324407	3	39.7	3	74	14	93	31	4	2	61	1.28
12324670--12324712	21	2.0	22	86	4	61	48	0	0	51	1.00
12324703--12324740	11	3.5	11	89	10	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12324672--12324751	39	2.1	39	88	9	119	51	0	0	48	1.00
12325294--12325353	31	1.9	31	96	0	111	41	0	36	21	1.54
12325440--12325503	11	5.7	11	85	5	76	59	0	0	40	0.97
12325437--12325503	33	2.0	33	91	0	107	59	0	0	40	0.97
12333150--12333199	12	4.0	12	82	17	66	78	4	2	16	1.00
12333150--12333199	24	2.0	24	88	11	75	78	4	2	16	1.00
12337596--12337638	18	2.4	18	80	7	52	46	2	0	51	1.13
12339682--12340021	117	2.9	115	80	9	366	38	4	26	31	1.75
12339886--12339989	29	3.5	29	74	18	106	37	4	26	30	1.77
12339701--12340016	59	5.4	59	81	6	340	37	4	26	31	1.75
12339798--12340045	29	8.5	28	67	19	100	37	3	26	32	1.74
12341982--12342040	6	9.8	6	75	14	59	54	0	5	40	1.23
12341983--12342040	17	3.6	17	79	13	77	55	0	5	39	1.22
12342396--12342620	120	1.9	120	90	1	362	17	20	24	36	1.94
12342469--12342918	205	2.2	206	94	0	776	20	22	21	35	1.96
12342793--12343004	86	2.5	86	92	0	343	22	24	18	34	1.96
12342588--12343210	292	2.1	291	94	0	1093	21	23	19	35	1.96
12343655--12343841	49	3.8	49	84	0	221	17	25	19	37	1.93
12343677--12343966	98	2.9	99	78	3	298	14	23	22	39	1.91
12344986--12345046	5	11.8	5	80	16	54	1	19	0	78	0.83
12344979--12345046	12	5.8	12	77	16	79	1	19	0	79	0.81
12344973--12345041	18	3.8	18	76	17	72	1	17	1	79	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12344978--12345048	24	3.0	24	85	4	99	2	18	0	78	0.86
12353611--12353670	21	2.8	22	82	7	70	33	23	6	36	1.81
12354384--12354667	51	5.5	51	87	1	345	30	22	15	32	1.94
12360010--12360576	50	11.5	50	75	7	449	34	15	31	18	1.92
12360010--12360537	149	3.6	149	81	5	513	34	15	31	18	1.92
12360010--12360544	199	2.7	197	84	2	687	34	15	31	18	1.92
12360115--12360587	149	3.2	149	82	5	460	34	16	30	18	1.93
12360753--12361186	123	3.5	123	91	0	692	35	16	25	22	1.95
12363997--12364072	10	7.9	9	74	11	62	30	5	0	64	1.15
12363998--12364072	28	2.6	29	95	2	134	30	5	0	64	1.16
12368256--12368318	32	2.0	31	87	9	92	33	4	23	38	1.76
12369709--12369754	25	1.9	23	86	8	65	36	4	4	54	1.40
12372258--12372319	31	2.0	31	87	0	88	43	3	1	51	1.27
12388602--12388655	21	2.5	22	73	8	58	42	1	7	48	1.42
12388934--12389079	26	5.6	26	87	0	193	25	16	26	31	1.96
12392316--12392585	102	2.6	101	88	5	382	24	24	22	28	1.99
12392521--12392687	80	2.1	80	83	0	208	23	19	23	32	1.98
12394150--12394179	2	15.0	2	100	0	60	50	0	0	50	1.00
12399921--12399962	16	2.7	15	80	16	50	38	4	4	52	1.44
12400568--12400626	28	2.1	29	83	3	75	47	1	5	45	1.34
12414263--12414304	6	7.0	6	91	0	66	21	0	61	16	1.34
12422832--12422890	28	2.1	28	81	6	66	28	1	3	66	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12425848--12425896	24	2.0	24	100	0	98	16	16	16	51	1.78
12429884--12430123	120	2.0	120	95	0	426	40	18	11	29	1.86
12437637--12437776	31	4.5	31	75	12	117	47	10	15	26	1.77
12437582--12437776	90	2.1	88	81	12	218	46	11	15	26	1.80
12438869--12438915	24	2.0	24	87	8	69	12	19	2	65	1.35
12440645--12440696	21	2.5	21	87	0	86	38	26	13	21	1.90
12442698--12442752	25	2.2	25	93	3	94	30	9	10	49	1.69
12444948--12444973	10	2.6	10	100	0	52	11	15	11	61	1.57
12446823--12447170	52	6.7	52	89	1	545	23	14	26	35	1.94
12451747--12451786	18	2.3	18	82	4	55	40	0	2	57	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126