genome.fa.s1.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  34  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10393650--10393714	29	2.2	29	91	0	103	18	16	33	30	1.94
10397329--10397358	3	10.0	3	100	0	60	66	0	0	33	0.92
10397478--10397524	24	2.0	24	82	0	58	70	14	6	8	1.32
10402612--10402657	25	1.9	25	91	8	78	34	4	4	56	1.39
10425910--10425945	18	2.0	18	100	0	72	16	33	16	33	1.92
10430299--10430336	19	1.9	19	89	5	58	44	0	2	52	1.14
10430328--10430405	20	3.8	20	81	14	88	46	2	0	51	1.14
10451685--10451725	20	2.0	20	86	9	57	39	2	7	51	1.43
10458088--10458128	12	3.3	12	83	16	57	75	0	0	24	0.80
10461166--10461308	14	9.9	14	63	20	53	42	26	0	30	1.56
10464472--10464540	26	2.7	25	91	4	120	21	24	4	49	1.68
10464642--10464694	27	2.0	27	84	0	70	26	32	22	18	1.97
10464986--10465011	10	2.6	10	100	0	52	23	0	7	69	1.14
10465152--10465176	11	2.3	11	100	0	50	36	0	0	64	0.94
10465147--10465186	20	2.0	20	90	9	64	37	0	0	62	0.95
10481792--10481839	24	2.0	24	87	0	69	22	22	2	52	1.58
10481812--10481848	17	2.2	17	95	0	65	18	21	0	59	1.38
10483208--10483573	59	6.2	59	85	3	470	36	3	28	31	1.74
10483356--10483564	29	7.1	29	66	18	101	36	4	29	29	1.76
10485440--10485504	34	1.9	34	87	0	94	50	4	0	44	1.22
10485440--10485514	17	4.3	17	75	3	69	52	5	0	42	1.24
10485614--10485656	18	2.4	18	80	3	52	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10485638--10485682	22	2.1	21	87	4	63	53	2	0	44	1.13
10487932--10487976	17	2.7	17	89	3	65	48	0	0	51	1.00
10487977--10488025	20	2.5	20	80	3	55	38	0	8	53	1.31
10487991--10488029	20	2.0	20	89	0	60	35	0	7	56	1.28
10491520--10491775	41	6.3	41	78	3	194	34	16	24	24	1.95
10491520--10491744	81	2.8	82	83	0	254	35	16	23	24	1.95
10492224--10492261	19	2.0	20	85	10	53	28	5	2	63	1.30
10492224--10492267	20	2.2	20	84	8	54	29	4	4	61	1.36
10493857--10493886	15	2.0	15	100	0	60	33	26	0	40	1.57
10497335--10497399	28	2.3	27	84	10	78	60	10	9	20	1.57
10502626--10502680	27	2.0	27	89	0	83	40	0	5	54	1.23
10502644--10502743	6	16.8	6	77	13	91	47	1	1	51	1.14
10502644--10502717	17	4.6	17	85	11	93	40	1	1	56	1.16
10502634--10502711	11	7.9	10	71	25	51	39	1	2	56	1.21
10504268--10504570	30	10.1	30	88	2	446	37	24	3	33	1.73
10518164--10518718	137	4.0	136	89	4	778	34	16	20	28	1.94
10518164--10518718	68	8.0	68	87	5	744	34	16	20	28	1.94
10518164--10518718	205	2.7	204	87	5	776	34	16	20	28	1.94
10519067--10519138	17	4.5	17	84	11	89	40	1	1	56	1.16
10519076--10519140	31	2.2	29	83	8	60	43	1	1	53	1.19
10519057--10519134	11	7.9	10	71	25	51	39	1	2	56	1.21
10519069--10519165	37	2.7	37	73	12	94	48	1	1	49	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10519067--10519165	6	16.8	6	75	15	82	47	1	1	50	1.14
10520857--10521000	31	4.8	29	87	7	184	37	25	4	32	1.75
10520692--10521000	30	10.1	30	80	9	340	38	23	3	33	1.73
10533028--10533418	31	11.7	31	65	18	153	33	16	20	29	1.94
10532984--10533463	68	7.0	68	93	0	798	33	16	20	28	1.95
10533797--10533851	27	2.0	27	89	0	83	40	0	5	54	1.23
10533815--10533914	6	16.8	6	77	13	91	47	1	1	51	1.14
10533815--10533888	17	4.6	17	85	11	93	40	1	1	56	1.16
10533805--10533882	11	7.9	10	71	25	51	39	1	2	56	1.21
10535446--10535778	30	11.1	30	89	3	508	38	24	3	34	1.71
10540748--10540779	3	10.7	3	100	0	64	0	0	31	68	0.90
10545447--10545489	21	2.0	22	86	4	61	4	6	25	62	1.40
10545483--10545522	21	2.0	21	90	5	64	12	5	17	65	1.44
10551566--10551615	21	2.4	21	79	0	55	50	12	6	32	1.64
10552549--10552604	22	2.5	23	82	2	69	39	0	1	58	1.08
10553210--10553318	54	2.0	54	98	0	209	47	18	4	29	1.68
10562551--10562627	24	3.3	23	79	16	79	33	3	1	61	1.23
10562592--10562644	19	2.7	20	74	11	56	32	1	1	64	1.15
10563020--10563053	16	2.1	16	89	10	52	29	2	2	64	1.22
10566768--10566846	6	13.2	6	77	15	74	46	2	1	49	1.23
10566758--10566830	17	4.5	17	80	14	75	41	2	2	53	1.29
10566768--10566838	11	6.5	11	72	19	51	45	2	1	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10566770--10566846	17	4.6	17	76	11	70	46	2	1	49	1.23
10566945--10566994	14	3.6	14	78	2	57	40	28	14	18	1.89
10568761--10569041	29	9.6	27	71	16	186	32	28	3	35	1.75
10568760--10569069	59	5.3	59	87	5	459	32	28	3	35	1.74
10568760--10569075	117	2.7	116	90	4	485	31	29	3	35	1.75
10568792--10569069	29	9.5	27	72	17	173	32	28	3	35	1.75
10568761--10569113	176	2.0	176	85	3	469	31	28	4	35	1.77
10585381--10585451	31	2.3	31	85	7	92	50	9	5	33	1.59
10585828--10585872	21	2.0	23	87	12	67	51	0	0	48	1.00
10585841--10585910	29	2.4	30	85	4	106	47	0	1	51	1.09
10586408--10586439	16	2.0	16	100	0	64	18	6	12	62	1.50
10586888--10586916	6	5.0	6	95	4	51	68	0	13	17	1.20
10591080--10591114	2	18.5	2	88	11	56	48	0	0	51	1.00
10591947--10591998	25	2.1	24	82	10	61	57	3	1	36	1.28
10592544--10592578	17	2.1	17	88	0	52	45	2	0	51	1.16
10593574--10593604	16	1.9	16	93	0	53	16	22	22	38	1.92
10594497--10594551	15	3.3	19	63	36	54	40	27	3	29	1.73
10594409--10594584	30	5.9	30	91	1	282	39	23	2	35	1.67
10594556--10594846	58	5.0	58	82	7	288	31	29	5	33	1.79
10594588--10594846	58	4.4	57	85	5	315	30	30	5	33	1.81
10594594--10594846	117	2.2	116	85	5	341	30	30	5	33	1.81
10594494--10594822	29	11.3	28	72	15	149	33	28	4	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10596077--10596117	23	1.9	21	85	14	57	48	19	4	26	1.69
10597025--10597065	18	2.3	18	83	8	57	48	0	2	48	1.14
10607436--10607491	22	2.5	22	88	0	76	21	32	12	33	1.91
10610902--10610940	15	2.6	15	100	0	78	17	5	41	35	1.72
10612921--10612989	31	2.4	28	78	7	75	55	0	1	43	1.08
10615261--10615328	31	2.2	31	94	0	118	33	14	10	41	1.80
10620107--10620162	29	1.9	29	85	0	76	33	5	25	35	1.79
10620118--10620364	29	8.4	29	70	13	116	36	3	24	35	1.73
10620207--10620547	117	2.9	117	80	7	318	36	2	22	38	1.69
10620266--10620536	30	9.2	30	79	4	239	37	2	22	38	1.66
10621599--10621629	15	2.1	15	93	0	53	38	0	3	58	1.15
10621688--10621734	2	23.5	2	91	0	76	46	0	2	51	1.13
10622764--10622887	39	3.2	39	73	15	121	27	15	30	26	1.96
10622735--10622899	78	2.1	78	86	2	224	26	15	29	27	1.96
10622877--10622989	39	2.9	39	83	6	115	25	22	27	24	2.00
10632154--10632523	30	12.5	29	73	16	183	34	2	23	39	1.68
10632172--10632275	29	3.6	29	77	11	106	34	5	25	34	1.80
10632252--10632484	59	4.0	55	77	13	168	35	1	24	39	1.63
10632319--10632523	30	7.0	28	82	12	216	35	0	21	42	1.54
10632270--10632484	89	2.4	89	79	9	215	36	0	23	39	1.61
10632242--10632501	60	4.4	58	80	7	258	35	1	23	39	1.65
10632310--10632523	60	3.6	57	85	5	248	35	0	21	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10633572--10633602	15	2.1	15	93	0	53	38	0	3	58	1.15
10633910--10633943	17	1.9	18	88	5	52	64	2	0	32	1.08
10634277--10634376	45	2.3	45	84	6	125	20	1	33	46	1.57
10636084--10636237	63	2.7	54	73	23	159	20	2	50	26	1.61
10636119--10636153	18	1.9	18	94	0	61	17	0	62	20	1.32
10636117--10636162	18	2.6	18	82	6	58	19	0	60	19	1.36
10638032--10638111	32	2.4	32	87	8	106	35	7	10	47	1.65
10640361--10640448	45	2.0	45	86	2	124	44	32	0	22	1.53
10640460--10640526	32	2.1	32	85	0	89	44	23	4	26	1.72
10648513--10648593	40	2.0	40	100	0	162	19	29	4	45	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126