genome.fa.s1.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  96  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29496728--29496785	23	2.5	24	72	25	61	32	1	10	55	1.44
29501185--29501238	27	2.0	27	100	0	108	37	25	7	29	1.83
29505703--29505838	57	2.3	58	85	8	179	47	1	1	49	1.19
29505932--29506025	44	2.1	44	86	7	127	37	26	5	30	1.79
29506007--29506094	16	5.5	16	88	0	140	26	30	4	38	1.76
29506007--29506093	32	2.7	32	98	0	165	26	29	4	39	1.76
29507711--29507811	20	4.9	20	77	10	89	47	11	6	33	1.67
29509724--29509981	59	4.4	58	88	4	374	35	3	29	32	1.73
29509762--29509983	30	7.6	27	71	22	139	35	3	28	32	1.73
29509753--29510040	29	9.8	30	69	20	141	34	3	27	34	1.74
29510106--29510447	162	2.1	162	94	0	605	41	13	18	26	1.87
29510182--29510488	162	1.9	161	87	4	395	43	13	18	24	1.85
29511270--29511329	10	6.1	10	70	3	50	38	5	1	55	1.32
29514625--29514756	29	4.5	30	74	14	89	35	3	21	39	1.71
29514825--29515328	162	3.1	162	92	0	814	42	12	17	26	1.86
29514901--29515411	162	3.2	157	83	7	438	45	12	17	25	1.83
29517075--29517544	59	8.0	59	84	2	552	35	4	27	32	1.76
29517133--29517543	176	2.3	176	87	4	585	36	3	27	32	1.74
29517517--29517602	29	3.0	29	78	8	95	34	4	19	40	1.73
29517671--29518174	162	3.1	162	92	0	814	42	12	17	26	1.86
29517747--29518257	162	3.2	157	83	7	438	45	12	17	25	1.83
29519963--29520213	59	4.3	58	87	5	306	37	4	26	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29520001--29520212	29	7.2	29	73	20	181	35	4	27	32	1.76
29520003--29520272	29	9.2	30	71	19	180	34	4	26	34	1.77
29519979--29520214	118	2.0	118	89	1	366	36	4	27	31	1.76
29519989--29520270	59	4.8	58	83	6	180	35	4	26	34	1.76
29520337--29520670	162	2.1	163	93	1	573	41	12	18	26	1.87
29521869--29521946	17	4.8	16	80	7	79	52	1	1	44	1.17
29522291--29522971	76	9.0	76	91	0	1060	32	18	16	32	1.93
29535061--29535318	59	4.4	59	92	0	381	32	3	30	33	1.73
29535090--29535317	29	7.8	29	71	19	161	32	2	30	34	1.70
29535063--29535378	118	2.7	115	83	7	332	33	3	27	34	1.75
29535460--29535786	162	2.0	162	94	2	568	41	13	18	26	1.87
29535521--29535869	162	2.2	160	81	9	397	46	13	17	22	1.83
29537417--29537494	17	4.8	16	80	7	79	52	1	1	44	1.17
29540346--29540385	21	1.9	21	89	0	62	47	7	10	35	1.65
29541773--29541804	11	2.9	11	95	0	55	62	0	0	37	0.95
29541831--29541871	5	8.4	5	79	15	50	58	0	2	39	1.11
29541913--29541966	22	2.3	22	84	12	63	68	1	3	25	1.16
29542044--29542076	13	2.6	13	90	4	50	75	6	3	15	1.11
29542171--29542227	22	2.5	23	86	11	82	68	5	7	19	1.33
29543292--29543354	17	3.8	16	79	12	56	25	1	9	63	1.34
29550110--29550144	16	2.2	16	90	10	54	62	5	0	31	1.18
29550588--29550628	15	2.5	17	80	11	59	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29554414--29554867	90	5.1	89	78	8	408	35	28	1	34	1.68
29554432--29554876	30	15.1	31	78	12	318	35	27	1	35	1.67
29560666--29561648	49	20.0	49	74	5	609	34	16	30	18	1.93
29560685--29561648	99	9.8	99	77	5	652	34	16	30	18	1.94
29560977--29561658	197	3.5	197	82	3	773	34	16	30	18	1.94
29561685--29561767	39	2.1	39	90	0	130	25	32	16	25	1.96
29563545--29563792	30	8.3	30	84	6	290	34	29	3	33	1.74
29563545--29563821	30	9.4	30	80	12	229	33	28	3	34	1.73
29563716--29563822	29	3.7	28	79	8	108	35	22	2	39	1.69
29565101--29565145	3	15.0	3	100	0	90	33	0	0	66	0.92
29566080--29566160	37	2.2	37	81	0	90	13	19	29	37	1.90
29569696--29569738	2	22.0	2	80	4	52	44	48	4	2	1.36
29569738--29569763	2	13.0	2	100	0	52	50	0	0	50	1.00
29573135--29573178	20	2.2	20	84	8	54	38	11	2	47	1.52
29573671--29573727	12	4.7	12	89	4	87	19	0	36	43	1.51
29573675--29573727	25	2.2	24	96	3	97	18	0	37	43	1.51
29573707--29573784	29	2.7	28	90	5	120	30	0	23	46	1.53
29573765--29573811	19	2.5	19	86	6	60	23	0	31	44	1.54
29573778--29573841	26	2.5	26	89	0	92	21	0	35	42	1.54
29573802--29573964	7	24.7	7	78	6	67	22	0	35	41	1.59
29573879--29573931	14	3.9	14	90	7	83	26	0	41	32	1.56
29573873--29573953	20	4.1	20	79	9	85	23	0	39	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29573804--29573928	7	19.3	6	76	8	70	22	0	37	39	1.60
29573862--29573962	14	7.7	13	78	8	80	23	0	35	40	1.55
29573808--29573962	13	11.8	13	70	9	82	22	0	36	40	1.59
29573887--29573960	14	5.4	14	80	11	82	25	0	36	37	1.56
29576818--29576865	20	2.3	21	86	10	64	33	0	6	60	1.22
29577231--29577299	33	2.1	32	89	2	102	42	15	2	39	1.63
29577677--29577875	29	7.0	29	76	7	151	21	12	10	55	1.66
29578348--29578672	110	3.0	110	80	2	348	27	19	19	33	1.96
29580400--29580432	12	2.8	12	95	0	57	48	0	0	51	1.00
29582074--29582389	29	10.8	28	68	12	179	33	26	3	36	1.74
29582077--29582297	60	3.7	59	81	5	234	34	25	2	37	1.70
29582205--29582581	59	6.4	56	81	6	351	32	27	6	34	1.81
29582224--29582579	117	3.0	114	84	5	426	33	26	6	33	1.81
29582224--29582538	29	10.7	28	69	20	139	33	27	6	33	1.81
29582224--29582565	176	1.9	177	83	5	442	33	26	5	33	1.80
29586945--29586991	18	2.5	19	79	10	51	21	0	6	72	1.07
29593344--29593734	191	2.0	193	92	2	653	36	10	13	39	1.79
29600003--29600107	52	2.0	52	92	0	174	36	15	16	32	1.90
29600006--29600120	52	2.2	51	86	6	142	39	16	14	29	1.89
29601109--29601136	2	14.0	2	100	0	56	50	50	0	0	1.00
29613277--29613429	37	4.1	37	83	2	182	24	18	28	28	1.98
29613285--29613425	74	1.9	74	86	1	201	22	17	31	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29615500--29615548	18	2.7	18	77	17	57	57	2	0	40	1.10
29618899--29618943	6	7.5	6	87	7	65	80	2	0	17	0.82
29619754--29619807	28	1.9	28	81	7	65	22	5	5	66	1.34
29620941--29620984	18	2.5	17	85	10	54	43	2	15	38	1.60
29622554--29622578	12	2.1	12	100	0	50	44	16	24	16	1.86
29632905--29633634	241	3.0	241	98	0	1415	38	19	11	30	1.88
29640303--29640413	18	5.5	19	76	15	107	5	4	20	69	1.27
29640315--29640414	22	4.8	22	78	13	90	6	4	19	71	1.24
29640382--29640442	31	2.0	31	96	0	113	6	8	21	63	1.44
29640303--29640415	19	5.5	21	77	14	112	5	4	21	69	1.27
29640444--29640503	24	2.5	24	94	0	102	11	6	13	68	1.39
29640449--29640503	12	4.6	12	79	0	65	12	5	10	70	1.31
29653113--29653178	27	2.4	27	97	0	123	31	22	16	28	1.96
29653214--29653289	19	3.9	19	85	1	71	17	21	21	40	1.91
29653234--29653292	19	3.1	19	90	0	91	16	22	18	42	1.89
29653232--29653292	13	4.8	13	78	11	63	16	22	19	40	1.90
29657686--29657781	27	3.6	27	82	0	102	26	34	17	21	1.96
29657740--29657789	13	3.5	15	68	15	52	26	30	18	26	1.98
29660090--29660196	55	1.9	55	94	0	187	29	9	16	43	1.79
29664375--29664423	19	2.5	19	80	9	55	55	8	2	34	1.41
29664877--29664914	18	2.1	19	90	5	60	39	0	5	55	1.23
29672675--29672912	52	4.6	52	88	0	343	26	14	23	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29674985--29675047	28	2.2	28	83	5	74	23	12	20	42	1.86
29675003--29675107	29	3.7	29	80	1	113	25	14	20	40	1.90
29675226--29675300	29	2.5	31	80	8	100	14	14	24	46	1.82
29677821--29678276	233	2.0	231	94	0	795	41	9	16	32	1.80
29685494--29685545	18	3.0	18	81	10	56	51	0	1	46	1.12
29685677--29685722	15	3.1	15	70	17	51	58	15	4	21	1.54
29687098--29687131	16	2.1	17	88	5	52	70	0	0	29	0.87
29690132--29690176	22	2.0	22	83	8	56	28	4	11	55	1.54
29691299--29691400	28	3.7	28	82	7	120	20	14	5	58	1.57
29697104--29697182	38	2.1	38	100	0	158	25	17	20	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126