genome.fa.s1.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  63  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18440080--18440226	66	2.2	66	91	0	240	15	22	17	44	1.86
18445660--18445787	22	5.8	22	66	17	68	49	0	2	47	1.19
18445696--18445810	4	28.5	4	68	18	60	49	0	1	47	1.17
18445651--18445810	8	19.5	8	68	17	62	50	1	1	46	1.20
18445687--18446099	18	23.9	17	62	24	68	50	2	1	45	1.25
18445760--18445810	26	2.0	26	84	0	66	50	0	1	47	1.12
18445661--18445875	87	2.4	87	93	1	367	50	1	1	46	1.21
18445697--18445810	14	7.9	14	67	16	72	50	0	1	47	1.17
18445838--18445875	12	3.4	11	85	14	51	55	0	0	44	0.99
18445814--18446639	112	7.6	111	80	11	854	48	3	1	46	1.31
18445852--18446633	224	3.6	219	83	9	970	48	3	1	46	1.30
18446122--18446200	18	4.4	18	79	3	70	50	3	0	45	1.19
18446111--18446205	44	2.2	43	78	12	104	49	4	0	46	1.21
18446464--18446520	22	2.4	24	80	11	64	42	1	0	56	1.10
18446556--18446609	18	3.0	18	80	0	63	50	1	1	46	1.23
18450796--18451258	82	5.6	82	79	6	424	22	26	25	24	2.00
18450796--18451258	41	11.3	39	77	11	344	22	26	25	24	2.00
18450796--18451261	123	3.8	122	79	9	484	22	26	25	25	2.00
18452498--18452566	12	5.7	12	69	16	52	52	1	4	42	1.30
18468165--18468230	19	2.8	26	68	29	74	30	18	25	25	1.98
18468264--18468450	36	5.2	36	83	6	204	32	11	26	28	1.92
18468260--18468450	72	2.7	73	87	4	264	31	12	26	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18473857--18473908	22	2.3	24	78	18	58	42	5	7	44	1.57
18474959--18475001	18	2.5	17	84	3	59	60	2	0	37	1.10
18475538--18475562	10	2.5	10	100	0	50	32	52	0	16	1.44
18476754--18477022	30	9.1	30	77	7	219	33	6	21	37	1.80
18477761--18477804	2	22.0	2	95	0	79	52	0	0	47	1.00
18478959--18479073	39	2.9	39	84	1	158	23	20	29	26	1.98
18478941--18479072	39	3.4	39	82	4	149	25	18	28	27	1.98
18482684--18482718	18	1.9	18	100	0	70	34	5	8	51	1.56
18487603--18487650	13	3.3	15	77	14	55	72	4	0	22	1.01
18487603--18487643	19	2.1	20	86	13	59	73	2	0	24	0.96
18487813--18487955	30	4.8	29	81	9	139	34	5	22	37	1.78
18487813--18487963	59	2.5	59	81	5	162	35	5	21	38	1.76
18489684--18490369	42	16.8	42	80	5	639	25	18	24	31	1.97
18489708--18490369	204	3.3	202	80	8	642	26	17	24	31	1.97
18490663--18490783	50	2.4	50	83	1	136	18	30	14	36	1.91
18490759--18490971	99	2.2	98	84	5	279	18	32	15	32	1.93
18490609--18490982	49	7.6	51	69	10	170	19	30	14	35	1.92
18492826--18492964	71	2.0	71	84	9	187	9	17	10	61	1.54
18495661--18495704	21	2.1	21	83	8	54	2	27	11	59	1.44
18508194--18508395	30	6.8	30	79	8	175	34	5	22	37	1.77
18508180--18508404	30	7.5	30	77	7	158	36	5	21	36	1.77
18514367--18514413	18	2.6	18	96	0	85	31	27	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18521219--18521268	25	2.0	24	85	11	66	66	0	32	2	1.03
18521679--18521713	17	2.1	17	88	0	52	20	20	14	45	1.85
18528148--18528247	19	5.3	19	85	4	130	24	21	19	36	1.95
18533965--18534000	17	2.2	17	90	5	56	55	11	13	19	1.68
18541756--18541796	22	1.9	21	85	5	55	51	4	0	43	1.23
18552822--18553015	65	3.0	65	89	1	282	18	20	12	48	1.80
18558870--18558921	21	2.5	21	79	14	54	50	0	5	44	1.26
18563158--18563231	20	3.8	19	70	12	60	10	24	18	45	1.81
18563201--18563258	20	2.9	19	85	7	71	10	25	22	41	1.85
18563246--18563285	20	2.0	20	95	0	71	22	25	12	40	1.89
18563293--18563325	16	2.1	16	100	0	66	6	6	39	48	1.53
18583000--18583083	38	2.2	38	100	0	168	53	25	8	13	1.67
18583540--18583679	65	2.2	65	85	0	181	54	12	15	17	1.71
18584397--18584436	18	2.2	18	86	0	53	60	0	0	40	0.97
18584470--18584503	2	17.5	2	93	6	61	52	0	0	47	1.00
18584469--18584505	17	2.2	17	100	0	74	54	0	0	45	1.00
18584472--18584501	15	2.0	15	100	0	60	53	0	0	46	1.00
18584511--18584557	23	2.0	24	83	4	60	72	4	0	23	1.02
18584542--18584634	47	2.0	47	82	6	116	61	3	0	35	1.12
18584519--18584634	9	12.9	9	69	17	55	62	3	0	33	1.12
18584619--18584665	11	4.3	11	78	5	51	63	8	0	27	1.23
18584622--18584665	22	2.0	22	86	4	63	63	9	0	27	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18584757--18584803	3	16.0	3	95	4	87	68	0	0	31	0.90
18587893--18587999	14	7.4	14	71	11	72	31	0	21	46	1.52
18587979--18588020	21	2.0	21	85	4	57	38	0	14	47	1.44
18590573--18590620	24	2.0	24	84	8	62	50	8	14	27	1.71
18591483--18591555	20	3.5	21	68	17	62	34	13	9	42	1.77
18598343--18598381	21	1.9	20	89	5	60	66	0	0	33	0.92
18602099--18602137	18	2.2	19	86	9	55	61	0	20	17	1.34
18604629--18605046	32	13.0	32	87	1	480	31	17	14	36	1.90
18613698--18613757	29	2.1	29	90	0	93	38	13	16	31	1.87
18617356--18617412	24	2.3	24	79	8	62	40	24	8	26	1.84
18618018--18618064	23	2.0	24	87	4	69	27	27	23	21	1.99
18619293--18619351	29	2.0	30	83	9	77	50	5	0	44	1.24
18619316--18619376	16	4.0	15	78	14	63	55	0	0	44	0.99
18626569--18626931	180	2.0	181	92	1	604	23	19	15	40	1.91
18628545--18628586	20	2.1	20	86	8	59	59	19	0	21	1.38
18628518--18628632	47	2.4	47	85	1	149	52	21	6	20	1.68
18629169--18629193	8	3.1	8	100	0	50	48	0	0	52	1.00
18634241--18634281	18	2.3	18	87	4	57	34	9	4	51	1.56
18635748--18635826	31	2.6	32	82	6	85	43	2	1	53	1.22
18635776--18635826	6	8.3	6	79	12	59	45	3	0	50	1.20
18637663--18637761	29	3.5	28	79	8	101	40	22	3	34	1.69
18637850--18637923	38	2.0	37	84	7	96	29	25	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18640613--18640645	2	16.5	2	100	0	66	51	48	0	0	1.00
18643862--18643956	31	3.2	31	67	19	92	28	20	9	42	1.83
18643860--18644040	59	3.0	59	84	3	218	24	17	11	45	1.82
18644248--18644382	31	4.5	31	71	12	93	54	8	9	27	1.63
18644824--18644862	18	2.1	19	90	4	62	58	0	2	38	1.12
18648193--18648226	16	2.1	16	89	10	52	29	17	0	52	1.45
18649298--18649337	21	1.9	21	89	0	62	25	27	2	45	1.66
18654239--18654348	54	2.0	55	87	1	159	31	9	21	37	1.85
18654242--18654361	54	2.2	55	83	1	143	34	7	22	35	1.82
18658175--18658448	59	4.7	59	83	3	281	33	7	24	34	1.84
18658175--18658477	29	10.4	29	67	16	117	33	6	24	35	1.82
18658426--18658537	30	3.8	30	84	7	140	41	1	16	39	1.59
18658422--18658599	29	6.0	29	77	10	137	38	2	20	38	1.65
18658422--18658552	58	2.2	58	82	1	163	39	1	20	38	1.62
18659655--18659692	14	2.8	14	88	4	51	39	0	0	60	0.97
18661028--18661290	39	6.8	39	69	4	136	25	20	30	23	1.98
18661022--18661290	78	3.5	78	84	4	337	25	20	30	23	1.98
18661535--18662771	49	25.2	49	65	21	444	17	24	18	39	1.92
18661538--18662853	98	13.4	98	90	0	1972	17	24	18	39	1.92
18661538--18663497	294	6.7	294	88	3	2849	17	23	19	39	1.92
18662779--18662928	76	2.0	76	89	2	230	14	21	22	41	1.89
18662885--18663441	49	11.3	49	71	12	426	17	23	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18662676--18663027	174	2.0	175	91	1	573	15	23	21	40	1.91
18662851--18663497	98	6.6	98	92	1	1028	16	23	20	39	1.92
18664451--18664518	21	3.3	20	86	8	84	2	13	1	82	0.86
18668904--18669094	97	2.0	97	83	6	244	39	15	15	29	1.88
18669390--18669548	59	2.7	59	77	3	158	35	7	20	36	1.81
18669568--18669714	28	5.2	28	75	8	129	35	1	25	38	1.65
18669566--18669795	56	4.0	56	79	10	152	36	3	23	36	1.71
18669595--18669854	30	9.0	29	73	14	157	36	3	22	36	1.73
18669624--18669824	57	3.5	57	80	11	189	37	3	22	36	1.71
18669652--18669841	60	3.2	60	79	6	194	38	3	20	36	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126