genome.fa.s1.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  118  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35379330--35379362	15	2.1	16	88	5	50	75	0	21	3	0.93
35380250--35380317	14	4.9	14	83	3	84	83	5	8	1	0.85
35380248--35380309	20	3.2	20	82	8	67	85	6	8	0	0.74
35380248--35380318	27	2.6	25	85	12	88	84	5	8	1	0.83
35380242--35380328	35	2.5	35	79	9	88	81	4	10	3	0.95
35380251--35380318	19	3.3	19	78	12	64	83	5	8	1	0.85
35381253--35382175	98	9.4	99	82	3	417	34	18	28	19	1.95
35381254--35381527	50	5.5	50	68	10	186	31	18	32	17	1.95
35381418--35382185	98	7.8	98	84	1	912	36	17	26	19	1.94
35381419--35382185	294	2.6	293	87	3	1083	36	17	26	19	1.94
35382267--35382439	51	3.4	50	66	15	129	32	16	19	31	1.93
35382266--35382455	103	1.8	103	90	2	310	33	15	19	31	1.93
35382277--35382492	103	2.1	102	83	5	265	34	16	18	30	1.93
35382525--35382666	39	3.6	38	73	5	131	21	26	23	28	1.99
35382561--35382860	39	7.7	39	68	19	160	24	30	19	26	1.98
35382510--35382862	78	4.5	78	85	1	440	24	28	19	26	1.99
35383234--35383321	6	15.2	6	70	19	62	44	1	3	51	1.25
35383234--35383313	17	4.6	17	88	1	115	43	0	3	52	1.19
35383286--35383328	23	1.9	22	90	4	68	48	2	0	48	1.14
35383912--35383947	17	2.0	19	89	10	58	52	0	0	47	1.00
35383936--35384017	13	6.5	13	79	12	73	60	2	3	32	1.27
35385166--35385304	30	4.7	30	73	15	110	33	25	5	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35385167--35385665	29	16.9	31	68	19	191	33	26	5	34	1.80
35385201--35385670	30	16.0	30	65	19	134	33	27	5	33	1.79
35385270--35385669	175	2.3	177	86	2	565	33	27	5	33	1.81
35385270--35385671	59	6.8	59	84	5	474	33	27	5	33	1.81
35385648--35385723	29	2.6	31	75	12	79	31	35	6	26	1.82
35395844--35395886	22	2.0	22	85	0	59	6	13	13	65	1.46
35395896--35395954	30	1.9	31	89	3	93	22	3	11	62	1.43
35401255--35401301	20	2.4	20	89	10	71	10	12	2	74	1.16
35401258--35401302	19	2.4	18	86	13	65	11	11	4	73	1.23
35405500--35405545	23	1.9	25	86	8	69	58	6	0	34	1.24
35409171--35409195	3	8.3	3	100	0	50	0	32	0	68	0.90
35422988--35423046	28	2.1	27	81	3	64	45	6	0	47	1.29
35426987--35427107	23	5.2	22	78	11	134	12	24	22	40	1.88
35426987--35427107	48	2.6	46	83	7	154	12	24	22	40	1.88
35427072--35427146	39	1.9	39	91	0	123	12	22	21	44	1.85
35427106--35427199	23	4.0	23	75	16	86	11	25	19	43	1.84
35428223--35428277	23	2.4	24	79	14	62	43	0	3	52	1.18
35428210--35428272	17	3.7	17	86	0	90	42	0	3	53	1.16
35428900--35428954	3	18.3	3	85	7	76	63	1	1	32	1.15
35430175--35430336	29	5.5	30	77	10	124	40	4	21	33	1.73
35430185--35430314	59	2.2	59	79	5	138	39	5	20	34	1.76
35431362--35431421	18	3.5	17	84	13	79	40	1	1	56	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35431362--35431418	3	19.0	3	83	0	69	38	1	1	57	1.19
35432124--35432226	6	17.8	6	71	11	81	53	2	0	43	1.15
35432141--35432216	23	3.3	23	83	3	98	53	3	0	42	1.19
35432142--35432245	12	9.0	12	72	11	83	55	4	0	39	1.21
35432124--35432244	17	7.4	17	75	13	110	53	4	0	42	1.20
35433395--35433548	30	5.1	30	78	12	156	34	27	4	33	1.77
35433395--35433571	60	3.0	60	81	8	193	34	26	5	33	1.80
35433436--35433573	30	4.6	31	75	12	121	34	25	6	34	1.82
35433493--35433573	29	2.7	30	81	9	94	32	24	9	33	1.88
35436724--35436750	2	13.5	2	100	0	54	48	0	0	51	1.00
35457226--35457263	13	2.6	14	84	16	51	55	0	0	44	0.99
35459503--35459535	3	11.0	3	93	0	57	63	0	3	33	1.10
35459794--35459847	14	3.8	14	77	2	63	35	1	0	62	1.06
35462280--35462305	3	8.7	3	100	0	52	65	0	0	34	0.93
35476997--35477039	20	2.2	20	87	8	61	46	0	9	44	1.35
35477102--35477214	41	2.8	41	78	10	126	41	4	15	38	1.68
35477102--35477157	21	2.8	20	75	5	58	42	3	16	37	1.65
35477250--35477358	20	5.5	19	69	10	67	43	6	14	35	1.71
35490924--35491061	68	2.0	69	85	1	188	46	23	9	20	1.80
35493477--35493519	23	2.0	21	86	9	59	32	2	6	58	1.38
35513129--35513173	23	2.0	23	86	4	65	53	2	8	35	1.45
35515750--35515803	25	2.2	26	86	10	85	11	29	11	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35515756--35515805	25	2.0	25	96	0	91	12	30	12	46	1.77
35519259--35519292	17	1.9	18	88	5	52	67	0	5	26	1.13
35519254--35519315	27	2.3	27	80	5	72	64	0	3	32	1.09
35519627--35519687	6	11.0	6	71	16	51	44	0	3	52	1.17
35519627--35519685	17	3.6	16	80	17	68	42	0	3	54	1.17
35519638--35519687	21	2.3	23	86	6	68	46	0	4	50	1.20
35520481--35520537	24	2.3	25	87	3	80	52	0	5	42	1.24
35521581--35521809	30	7.7	29	82	9	239	40	14	1	43	1.56
35521581--35521809	60	3.8	60	85	7	288	40	14	1	43	1.56
35521581--35521796	90	2.4	90	85	3	285	41	14	1	42	1.56
35533497--35533994	50	9.9	51	69	10	168	39	23	23	14	1.91
35533537--35534143	100	6.1	100	83	2	664	39	22	24	14	1.91
35533697--35533973	50	5.6	49	69	11	177	36	23	27	13	1.92
35533548--35534143	200	3.0	198	85	2	746	38	22	24	14	1.91
35534509--35534613	17	6.3	17	84	7	117	43	0	2	52	1.22
35534527--35534614	11	8.0	11	71	17	67	44	0	3	52	1.18
35534509--35534597	6	16.0	6	70	19	68	43	1	2	52	1.20
35535398--35535465	25	2.8	24	86	6	91	52	0	4	42	1.21
35535383--35535415	3	11.0	3	100	0	66	66	0	0	33	0.92
35536369--35536462	31	3.1	29	75	9	73	39	14	4	41	1.66
35542777--35542807	6	5.2	6	92	0	53	64	3	32	0	1.09
35547123--35547160	20	1.9	19	94	5	67	42	10	13	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35547854--35547902	25	2.0	24	84	4	62	44	0	0	55	0.99
35560161--35560207	23	2.0	23	83	0	58	48	12	10	27	1.74
35562219--35562252	15	2.2	16	89	5	52	67	0	0	32	0.91
35562840--35562888	16	2.9	17	75	9	55	44	0	4	51	1.20
35562804--35562933	36	3.7	36	68	21	98	45	2	3	48	1.33
35564146--35564229	31	2.8	31	83	3	100	33	9	15	41	1.79
35564146--35564207	29	2.1	30	87	6	90	32	9	17	40	1.82
35570487--35570549	8	8.2	8	70	16	53	36	0	1	61	1.05
35570481--35570529	22	2.2	22	85	7	73	34	0	0	65	0.93
35570480--35570529	21	2.3	21	83	12	66	36	0	0	64	0.94
35570482--35570547	30	2.3	29	81	5	71	36	0	1	62	1.05
35581826--35581889	31	2.1	31	82	5	76	42	9	6	42	1.62
35582255--35582311	30	1.9	30	86	13	82	36	10	15	36	1.82
35585134--35585196	30	2.1	30	81	3	72	50	12	3	33	1.56
35591498--35591535	18	2.1	18	95	0	67	52	13	5	28	1.61
35591620--35591672	19	2.7	20	79	8	54	54	7	3	33	1.46
35591629--35591677	19	2.6	19	80	3	55	51	6	2	40	1.38
35591929--35591976	21	2.3	21	76	16	55	25	16	14	43	1.86
35602013--35602224	103	2.1	103	99	0	415	32	15	16	35	1.90
35618698--35618884	28	6.5	27	72	21	132	33	1	29	35	1.67
35618693--35618858	58	2.8	58	90	5	264	33	0	31	34	1.63
35618696--35618884	58	3.3	56	82	10	222	33	1	29	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35618814--35618893	29	2.8	28	83	12	92	33	2	25	38	1.69
35619193--35619256	32	2.0	33	84	9	87	62	4	9	23	1.44
35619886--35619928	22	2.0	20	86	8	59	41	2	0	55	1.12
35620675--35620744	13	5.1	14	77	19	76	17	15	25	41	1.89
35620675--35620744	27	2.6	27	95	0	122	17	15	25	41	1.89
35620809--35620849	17	2.3	18	91	4	66	53	0	2	43	1.13
35621205--35621837	200	3.2	201	90	2	974	22	22	19	35	1.96
35633063--35633221	29	5.5	28	73	18	94	34	3	27	34	1.73
35633062--35633222	88	1.8	88	80	10	195	34	3	27	34	1.73
35633086--35633221	59	2.3	57	83	7	166	33	2	29	34	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126