genome.fa.s1.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  62  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18111880--18112110	115	2.0	115	89	1	356	27	14	22	35	1.93
18111828--18112153	167	2.0	167	88	4	498	26	14	22	35	1.93
18113857--18113971	59	1.9	59	81	6	135	34	11	13	40	1.80
18114141--18114264	54	2.2	55	77	8	126	35	12	23	28	1.92
18114110--18114249	54	2.5	58	75	8	137	31	15	27	26	1.95
18118064--18118131	32	2.1	33	83	8	86	14	14	22	48	1.80
18138899--18138940	20	2.2	19	91	4	66	42	21	19	16	1.89
18145013--18145037	13	1.9	13	100	0	50	40	24	20	16	1.91
18156551--18156711	80	2.0	80	87	0	232	44	21	12	21	1.85
18158673--18158733	31	2.0	31	93	0	104	45	8	9	36	1.67
18173114--18173160	22	2.1	22	100	0	94	57	17	12	12	1.65
18176714--18176743	16	1.9	16	93	6	53	20	16	3	60	1.50
18177137--18177166	12	2.6	11	90	10	51	53	36	0	10	1.35
18178894--18178931	19	2.1	19	85	5	51	50	5	42	2	1.39
18198969--18199052	43	2.0	43	97	0	159	33	7	20	39	1.80
18201553--18201651	24	4.1	24	84	1	126	54	7	10	28	1.60
18201543--18201651	48	2.2	49	90	1	166	52	7	11	28	1.65
18203358--18203387	15	2.0	15	93	0	51	50	0	16	33	1.46
18203455--18203526	36	2.0	36	97	0	135	26	15	22	36	1.93
18204700--18205173	238	2.0	238	92	0	786	33	13	19	33	1.91
18207972--18208148	40	4.5	40	78	4	171	24	18	21	36	1.95
18208009--18208167	80	2.0	80	83	0	201	24	16	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18213224--18213258	12	2.9	12	86	0	52	5	37	34	22	1.78
18217491--18217533	16	2.7	16	79	13	52	60	0	2	37	1.10
18229524--18229558	18	1.9	18	88	11	54	54	2	5	37	1.39
18229916--18229958	20	2.2	20	100	0	86	25	30	9	34	1.87
18233246--18233333	29	3.0	29	100	0	176	23	13	20	42	1.88
18238346--18238385	20	2.0	20	95	0	71	27	15	2	55	1.53
18247190--18247310	58	2.1	59	92	1	199	48	19	0	32	1.49
18250519--18250569	6	8.8	6	89	6	63	54	0	25	19	1.44
18250518--18250590	35	2.2	33	80	11	85	54	0	24	20	1.44
18250518--18250590	12	6.5	10	79	17	65	54	0	24	20	1.44
18255014--18255054	20	2.0	22	90	9	68	14	0	24	60	1.34
18258638--18258691	27	2.0	28	85	10	76	79	0	16	3	0.87
18258644--18258690	19	2.4	19	79	13	51	80	0	17	2	0.80
18264123--18264320	109	1.8	110	82	3	256	39	16	11	32	1.85
18266943--18267013	20	3.7	19	85	7	81	2	14	0	83	0.77
18266946--18267013	6	10.8	6	83	10	75	1	14	0	83	0.71
18266945--18267013	13	5.4	13	84	5	88	1	14	0	84	0.70
18267913--18267970	7	8.1	7	90	3	71	5	17	0	77	0.94
18268802--18269635	415	2.0	415	92	0	1391	28	20	14	35	1.93
18272951--18273154	109	1.9	110	83	3	268	37	16	13	31	1.88
18273351--18273404	26	2.0	27	85	3	74	62	0	3	33	1.12
18276918--18276957	20	2.0	20	90	9	64	42	30	10	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18286626--18286717	33	2.8	33	86	0	112	27	3	46	22	1.67
18288059--18288115	30	1.9	30	92	0	96	35	5	24	35	1.78
18288186--18288234	16	3.1	17	77	16	52	36	0	20	42	1.52
18291044--18291073	14	2.1	14	100	0	60	50	6	6	36	1.55
18291429--18291541	20	6.1	19	74	20	96	31	1	4	61	1.26
18291432--18291561	20	7.3	17	71	23	74	30	2	3	63	1.22
18291505--18291561	15	3.4	16	77	13	62	29	1	1	66	1.12
18291435--18291589	73	2.1	72	80	9	161	33	3	2	60	1.29
18294808--18294841	17	2.1	16	88	5	50	41	0	0	58	0.98
18302255--18302295	14	2.9	14	88	0	64	17	0	31	51	1.46
18302812--18302874	27	2.3	27	83	0	72	23	33	19	23	1.97
18303062--18303102	22	1.9	21	85	5	55	31	21	12	34	1.91
18305154--18305204	21	2.5	21	81	9	61	72	5	1	19	1.15
18305154--18305220	21	3.2	21	76	16	59	70	7	1	20	1.20
18305447--18305521	26	2.8	25	80	11	87	62	6	0	30	1.21
18306287--18306327	21	1.9	22	85	5	57	63	7	7	21	1.45
18312972--18313048	31	2.5	31	82	4	102	27	9	15	48	1.75
18313620--18313659	21	2.0	20	90	5	62	27	0	5	67	1.11
18318927--18318980	28	2.0	27	81	3	63	42	9	9	38	1.69
18320293--18320343	21	2.4	21	86	0	75	27	3	13	54	1.56
18321197--18321226	15	2.1	15	93	6	53	53	0	40	6	1.27
18325949--18325998	21	2.3	22	83	10	59	40	6	2	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18325958--18325998	22	1.9	21	85	5	55	43	4	2	48	1.37
18326233--18326284	18	3.0	18	81	10	56	51	0	1	46	1.12
18327254--18327289	19	1.9	19	88	5	56	52	19	11	16	1.73
18327366--18327408	13	3.2	13	80	6	50	81	18	0	0	0.69
18327625--18327743	57	2.1	58	91	1	195	32	0	19	47	1.49
18328588--18328665	29	2.7	29	91	0	120	38	20	21	19	1.94
18328983--18329031	18	2.7	19	81	9	57	67	18	0	14	1.23
18328983--18329017	18	1.9	18	94	0	61	68	20	0	11	1.20
18329019--18329050	13	2.5	13	94	0	55	65	6	0	28	1.16
18329149--18329250	41	2.5	41	90	6	145	30	25	15	28	1.96
18333155--18333194	17	2.3	18	82	4	55	60	2	2	35	1.24
18334897--18334934	14	2.6	15	80	19	53	52	13	0	34	1.40
18340469--18340542	38	1.9	39	83	2	96	35	4	5	55	1.42
18348795--18348841	23	2.0	23	100	0	94	29	31	12	25	1.93
18354130--18354451	160	2.0	159	92	0	527	31	23	15	29	1.95
18361770--18361826	24	2.3	26	81	9	73	57	3	3	35	1.33
18361796--18361845	21	2.5	20	77	6	57	68	2	0	30	1.01
18363182--18363227	21	2.2	21	88	3	67	32	21	17	28	1.96
18370074--18370108	17	2.1	17	89	5	54	34	5	8	51	1.56
18370758--18370810	26	2.1	25	82	3	61	47	13	15	24	1.81
18373526--18373561	16	2.2	16	90	0	54	41	5	22	30	1.76
18373559--18373647	44	2.0	46	86	8	130	26	5	29	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18375277--18375313	2	19.0	2	94	5	67	48	0	0	51	1.00
18387284--18387730	195	2.3	195	80	5	476	27	19	26	27	1.99
18397436--18397501	7	9.9	7	75	9	57	18	19	27	34	1.95
18397425--18397487	32	2.0	32	96	0	117	19	17	28	34	1.94
18398656--18398699	6	7.3	6	80	10	54	31	4	0	63	1.14
18400839--18400889	21	2.4	21	81	12	52	45	7	0	47	1.32
18406781--18406968	67	2.9	65	86	3	252	50	12	19	18	1.78
18409648--18409749	50	2.0	50	100	0	204	17	11	26	44	1.83
18412005--18412375	64	5.9	65	79	8	424	46	11	22	19	1.81
18412025--18412397	186	2.0	186	98	0	728	46	10	23	19	1.81
18415138--18415166	2	14.5	2	100	0	58	51	0	0	48	1.00
18415584--18415809	90	2.5	87	81	11	244	38	19	7	34	1.80
18415876--18415930	21	2.8	20	78	15	60	72	1	3	21	1.09
18415898--18416065	9	17.8	9	68	23	73	64	2	3	28	1.24
18415897--18416064	19	8.9	18	73	14	117	65	2	3	27	1.24
18415897--18416031	36	4.4	29	70	19	89	65	2	3	28	1.24
18415875--18416063	10	19.6	10	64	19	64	66	2	3	27	1.22
18415897--18416062	58	2.9	56	81	12	137	65	3	3	27	1.24
18416324--18416385	10	6.6	9	75	20	56	38	1	1	58	1.18
18423675--18423737	22	2.9	21	83	9	65	12	1	34	50	1.50
18428257--18428323	7	9.7	7	77	9	57	19	26	22	31	1.98
18428250--18428323	21	3.6	21	80	10	89	18	25	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18428272--18428326	20	2.7	20	83	13	76	18	25	20	36	1.94
18429482--18429540	6	9.8	6	77	17	52	33	1	1	62	1.15
18429482--18429539	13	4.8	13	76	17	54	34	1	1	62	1.16
18432124--18432255	68	1.9	69	85	1	185	49	6	2	42	1.40
18432201--18432276	37	2.1	36	85	11	102	53	3	0	42	1.19
18439180--18439215	18	1.9	19	94	5	65	52	11	5	30	1.59
18439509--18439733	43	5.3	42	85	1	315	20	29	22	26	1.99
18439802--18439830	15	1.9	15	100	0	58	48	34	3	13	1.60
18440045--18440082	11	3.5	11	80	20	53	0	47	23	28	1.52
18440031--18440083	21	2.5	21	93	0	88	0	47	20	32	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126