genome.fa.s1.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  45  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13449927--13450014	32	2.7	33	96	3	169	30	4	3	61	1.32
13449985--13450033	20	2.5	19	86	3	62	24	6	6	63	1.41
13450019--13450106	35	2.6	34	81	11	110	32	7	3	55	1.45
13449932--13450101	87	2.0	85	89	6	263	30	6	4	59	1.41
13451175--13451296	30	4.1	30	91	0	172	28	4	3	63	1.31
13451217--13451261	23	2.0	23	82	8	56	31	4	4	60	1.37
13456843--13456896	25	2.2	25	96	0	99	22	11	18	48	1.79
13457094--13457146	21	2.5	21	75	0	52	33	20	13	32	1.91
13461624--13461686	29	2.2	28	82	2	72	22	11	23	42	1.85
13461716--13461797	26	3.2	26	89	0	119	14	23	21	40	1.90
13462270--13462294	11	2.3	11	100	0	50	8	8	32	52	1.60
13463462--13463567	53	2.0	53	96	0	194	37	7	7	47	1.60
13463748--13463798	19	2.6	20	96	3	95	39	17	17	25	1.92
13465104--13465147	23	1.9	23	81	9	54	56	0	4	38	1.20
13468754--13468795	21	1.9	21	85	9	57	52	2	23	21	1.59
13468752--13468799	21	2.3	20	80	16	53	54	2	22	20	1.55
13476033--13476089	19	3.1	19	79	2	62	43	8	47	0	1.34
13478256--13478282	13	2.1	13	100	0	54	22	11	0	66	1.22
13478530--13478688	80	2.0	80	98	0	309	28	18	19	33	1.95
13485879--13486037	80	2.0	80	98	0	309	33	19	18	28	1.95
13486692--13486729	19	2.0	20	84	5	51	26	28	0	44	1.54
13486832--13486870	18	2.1	19	90	4	62	23	28	0	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13488201--13488242	15	2.7	15	79	13	50	73	0	0	26	0.83
13488580--13488636	24	2.4	25	79	8	73	47	0	3	49	1.18
13496679--13496753	39	1.9	38	86	7	107	60	1	10	28	1.38
13509742--13509770	2	14.5	2	100	0	58	48	0	0	51	1.00
13518195--13518294	33	3.0	33	75	8	96	31	23	20	26	1.98
13530791--13530914	23	5.4	22	70	20	76	71	5	3	19	1.20
13530823--13530920	11	8.5	11	70	22	67	72	4	3	20	1.15
13530823--13530920	22	4.8	21	71	16	80	72	4	3	20	1.15
13530805--13530869	26	2.4	28	80	12	73	72	6	0	21	1.06
13530791--13530920	22	5.7	22	70	20	72	71	5	3	20	1.19
13531029--13531087	3	19.3	3	96	3	109	67	0	0	32	0.91
13532554--13532925	59	6.4	59	87	3	511	36	3	28	31	1.75
13532554--13532925	117	3.2	116	89	2	541	36	3	28	31	1.75
13532554--13532923	176	2.1	176	87	3	532	36	3	28	31	1.74
13533082--13533554	162	2.9	160	93	2	793	45	13	15	25	1.83
13537514--13537625	59	1.9	59	88	0	170	47	10	11	30	1.74
13541243--13541291	24	2.1	24	88	3	73	22	12	16	48	1.79
13541543--13541601	29	2.0	29	100	0	118	27	27	13	32	1.94
13542327--13542797	130	3.7	130	78	7	356	35	11	12	41	1.79
13542205--13542797	131	4.6	131	76	7	444	35	10	12	40	1.78
13549689--13549781	29	3.2	29	93	1	152	40	9	8	40	1.69
13551427--13551489	30	2.1	30	82	8	74	50	3	4	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13551629--13551702	32	2.4	32	80	6	82	45	8	5	40	1.56
13553809--13553847	3	13.3	3	89	5	62	30	2	0	66	1.05
13564370--13564467	45	2.2	45	89	5	146	30	17	15	36	1.91
13586762--13587654	38	23.3	38	75	11	596	34	21	15	27	1.94
13586762--13587608	115	7.4	115	79	7	724	35	21	15	27	1.94
13586775--13587608	153	5.4	153	81	6	796	35	21	16	27	1.94
13586783--13587655	268	3.3	267	83	5	1002	35	21	15	27	1.94
13588389--13588420	13	2.3	15	89	10	50	15	15	6	62	1.51
13591291--13591566	29	9.3	30	77	11	185	37	2	24	35	1.68
13591312--13591566	60	4.3	59	74	10	198	37	1	24	36	1.67
13592642--13592672	15	2.1	15	93	0	53	38	0	3	58	1.15
13593198--13593239	20	2.1	20	90	0	66	47	2	2	47	1.28
13595576--13595671	31	3.1	31	82	5	88	30	7	10	52	1.63
13595622--13595708	31	2.8	31	92	0	138	33	10	11	44	1.74
13600859--13600883	3	8.3	3	100	0	50	68	0	32	0	0.90
13608231--13608388	85	1.9	85	82	2	201	24	25	15	34	1.95
13607945--13608885	208	4.5	208	88	2	1226	24	22	16	37	1.94
13608429--13608596	85	2.0	85	84	2	221	25	24	16	33	1.95
13608781--13608978	76	2.6	76	95	1	344	19	21	16	42	1.89
13622180--13622213	17	2.0	17	94	0	59	5	8	41	44	1.60
13622311--13622348	14	2.6	15	87	4	51	2	0	21	76	0.91
13622304--13622350	20	2.4	19	80	16	51	2	0	19	78	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13626537--13626569	3	11.0	3	100	0	66	66	0	0	33	0.92
13626568--13626592	3	8.3	3	100	0	50	36	0	0	64	0.94
13632782--13632810	13	2.1	14	93	6	51	82	0	17	0	0.66
13632780--13632813	17	2.1	16	88	5	50	82	0	17	0	0.67
13634576--13634636	19	3.1	19	75	17	61	60	0	1	37	1.07
13634738--13634781	16	2.8	15	83	10	52	68	4	0	27	1.09
13634738--13634784	17	2.9	16	79	17	53	65	4	0	29	1.11
13634850--13634896	19	2.4	20	85	3	60	44	0	4	51	1.21
13638420--13638526	25	4.2	25	75	10	92	66	1	7	24	1.28
13639920--13639949	13	2.2	14	94	5	53	13	0	13	73	1.10
13640336--13640751	39	10.4	39	74	11	187	27	14	24	33	1.94
13640314--13640751	81	5.4	81	80	6	431	27	15	23	33	1.95
13640415--13640751	121	2.8	119	76	7	313	27	13	25	33	1.94
13640768--13641467	93	7.3	93	71	13	474	26	21	16	35	1.94
13640770--13641489	192	3.8	192	85	2	930	26	21	16	36	1.94
13640759--13641489	383	1.9	384	86	3	1042	26	21	16	36	1.94
13641339--13641518	93	1.9	93	80	6	204	27	20	13	38	1.91
13641691--13642019	49	6.7	49	83	1	363	19	25	18	36	1.94
13641691--13642017	147	2.2	147	83	2	406	19	25	18	36	1.94
13642477--13642693	112	1.9	112	84	0	290	40	13	19	25	1.89
13643897--13643927	14	2.2	14	100	0	62	54	22	0	22	1.44
13649383--13649422	8	4.9	8	87	6	53	2	15	5	77	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13649383--13649432	16	2.9	17	82	8	57	2	16	4	78	1.00
13650840--13650885	22	2.1	22	84	15	60	15	0	26	58	1.37
13650916--13650945	13	2.2	14	94	5	53	13	0	10	76	1.01
13651851--13651891	15	2.9	15	75	24	52	43	7	12	36	1.70
13663041--13663144	23	4.4	23	82	7	129	44	21	24	10	1.83
13663039--13663144	48	2.3	47	85	8	144	43	21	23	11	1.85
13664759--13664816	29	2.0	29	93	0	98	29	18	22	29	1.98
13670400--13670918	259	2.0	259	97	0	975	29	26	13	29	1.94
13673051--13673098	23	2.1	23	100	0	96	62	4	4	29	1.32
13680167--13680235	27	2.6	27	81	4	77	39	0	13	47	1.42
13682173--13682219	19	2.6	19	86	6	62	51	4	0	44	1.21
13682375--13682432	17	3.5	17	86	6	75	77	5	1	15	1.02
13689810--13689850	21	2.0	20	86	9	57	63	7	7	21	1.45
13689979--13690229	29	8.6	29	78	9	185	35	1	27	34	1.69
13689987--13690123	30	4.7	29	75	13	102	38	2	24	33	1.71
13689979--13690215	87	2.7	88	81	3	264	36	1	27	35	1.67
13690058--13690239	29	6.3	29	83	6	208	31	1	28	37	1.67
13695487--13695527	21	2.0	21	85	9	57	53	9	7	29	1.60
13695934--13695976	6	6.8	6	86	7	59	48	0	0	51	1.00
13721921--13721947	12	2.2	12	100	0	54	37	0	25	37	1.57
13723432--13723484	23	2.3	23	96	0	97	24	22	7	45	1.78
13725731--13725804	23	3.2	23	81	11	98	44	18	29	6	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13725809--13725852	16	2.6	17	82	7	63	75	6	2	15	1.12
13731995--13732033	14	2.8	14	88	0	60	64	2	0	33	1.08
13736074--13736260	41	4.5	41	86	6	252	35	12	25	26	1.91
13736080--13736289	82	2.6	82	82	8	223	37	11	25	26	1.90
13736080--13736301	123	1.8	123	82	5	288	36	12	25	26	1.91
13763134--13763394	37	7.1	37	90	0	360	32	34	21	11	1.90
13767107--13767140	14	2.4	14	90	0	50	64	2	2	29	1.22
13767381--13767411	16	1.9	16	93	0	53	48	9	35	6	1.62
13787135--13787166	2	16.0	2	100	0	64	50	0	0	50	1.00
13792478--13792524	21	2.2	21	84	0	58	27	12	23	36	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126