genome.fa.s1.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  57  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16644141--16644209	34	2.0	35	86	8	97	2	14	5	76	1.08
16650851--16651119	43	6.3	42	82	7	274	28	25	10	34	1.90
16650851--16651119	86	3.2	85	86	5	348	28	25	10	34	1.90
16656343--16656368	12	2.2	12	100	0	52	15	0	0	84	0.62
16657744--16657962	120	1.8	120	87	0	330	28	25	16	30	1.97
16660518--16661085	153	3.8	149	83	8	677	42	11	2	43	1.54
16660559--16661085	149	3.5	150	88	3	715	43	11	2	42	1.55
16661502--16661539	3	12.7	3	100	0	76	34	0	31	34	1.58
16662865--16662909	23	2.0	23	81	0	54	44	4	13	37	1.64
16663695--16663772	17	4.5	17	83	1	84	34	3	5	56	1.40
16665617--16665716	29	3.5	27	72	20	69	35	22	6	37	1.78
16665633--16665724	29	3.2	28	72	17	71	30	26	8	34	1.86
16665616--16665746	58	2.3	56	85	7	181	34	23	6	35	1.80
16665645--16665746	29	3.5	28	71	20	93	34	23	5	36	1.79
16677892--16678585	209	3.3	210	87	3	988	37	19	22	21	1.94
16678878--16678972	17	5.5	17	83	2	118	34	2	4	58	1.29
16678876--16678972	35	2.8	35	82	1	124	35	2	4	58	1.29
16678879--16678972	6	16.3	6	69	8	52	35	2	4	58	1.29
16680887--16681004	29	4.1	29	80	13	120	33	0	27	38	1.57
16682038--16682075	16	2.4	16	86	8	51	44	0	2	52	1.14
16684091--16684249	58	2.8	58	80	10	159	32	24	7	35	1.84
16685858--16685899	21	2.0	21	86	9	59	69	2	0	28	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16685935--16685991	24	2.5	23	76	15	64	63	1	1	33	1.15
16687082--16687123	12	3.5	12	83	6	50	47	0	0	52	1.00
16687103--16687154	22	2.3	22	80	12	61	48	0	3	48	1.20
16687634--16687686	24	2.1	27	82	10	67	66	0	0	33	0.92
16687943--16687982	1	40.0	1	94	0	71	0	2	97	0	0.17
16695212--16695246	16	2.1	17	89	5	54	42	17	2	37	1.64
16697902--16697945	21	2.2	20	84	8	54	52	0	2	45	1.13
16702160--16702310	72	2.1	72	94	0	266	37	18	15	28	1.92
16702761--16702812	19	2.6	20	84	6	70	80	0	19	0	0.71
16702758--16702810	10	5.2	10	84	9	63	81	0	18	0	0.70
16702761--16702795	5	7.2	5	87	6	54	85	0	14	0	0.59
16703124--16703442	112	2.9	111	86	4	425	31	21	9	37	1.85
16703871--16704432	49	11.4	49	73	8	347	34	16	30	18	1.93
16703896--16704292	147	2.7	147	79	3	431	34	17	30	17	1.93
16703876--16704432	99	5.7	97	75	8	317	34	16	30	18	1.93
16704657--16705092	39	11.0	39	77	9	391	29	27	17	25	1.98
16704656--16705092	79	5.5	79	78	9	408	29	27	17	25	1.97
16704661--16705040	40	9.5	41	75	11	154	29	27	17	25	1.97
16705759--16705801	16	2.8	16	89	6	63	58	4	9	27	1.49
16705762--16705807	14	3.1	14	87	6	56	63	4	8	23	1.42
16705927--16706294	59	6.3	59	78	6	358	35	3	26	33	1.74
16705938--16706305	117	3.1	116	78	8	361	36	3	26	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16705927--16706302	29	12.9	30	80	7	337	35	3	26	34	1.74
16708456--16708945	39	12.6	39	72	8	309	23	19	32	24	1.97
16708456--16708945	78	6.3	78	85	0	597	23	19	32	24	1.97
16708464--16708945	155	3.1	155	86	1	642	24	18	32	24	1.97
16711124--16711405	29	9.7	29	81	4	239	31	3	30	34	1.74
16711124--16711415	59	5.0	58	78	4	277	31	3	30	35	1.73
16712244--16712278	17	1.9	19	88	11	56	11	22	2	62	1.41
16713155--16713292	42	3.4	40	84	5	161	28	28	16	25	1.97
16719219--16719366	44	3.4	44	76	5	138	31	16	25	26	1.96
16719418--16719457	2	20.5	2	89	5	64	50	47	2	0	1.14
16725015--16725091	6	12.8	6	100	0	154	49	16	0	33	1.46
16729558--16729592	14	2.5	14	100	0	70	34	22	14	28	1.93
16730590--16730620	16	1.9	16	93	0	53	61	0	16	22	1.34
16731422--16731482	26	2.4	27	86	10	92	24	22	22	29	1.99
16731469--16731559	38	2.4	38	76	8	105	30	10	26	31	1.91
16731587--16731661	37	2.0	37	97	0	141	25	20	29	25	1.99
16751300--16751367	34	2.0	34	100	0	136	23	32	11	32	1.91
16754124--16754166	20	2.2	20	95	0	77	23	25	25	25	2.00
16755788--16755832	21	2.2	21	88	4	65	26	11	11	51	1.71
16756580--16756826	101	2.5	100	81	4	273	34	19	20	25	1.96
16758810--16758854	22	2.1	21	84	12	56	17	8	6	66	1.40
16759926--16759979	25	2.2	25	83	6	65	24	0	5	70	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16766180--16766213	18	2.0	18	88	11	54	26	17	5	50	1.69
16773092--16773121	13	2.3	13	94	0	51	20	16	23	40	1.91
16791776--16791820	24	1.9	23	86	4	63	8	44	0	46	1.34
16810456--16810502	23	2.0	23	91	0	76	68	4	25	2	1.19
16813059--16813131	36	2.0	36	91	0	119	28	19	20	31	1.97
16814109--16814159	24	2.0	25	81	7	59	39	15	3	41	1.66
16820319--16820546	51	4.6	51	83	10	285	32	14	24	28	1.94
16820412--16820497	43	2.0	43	88	0	127	31	11	24	32	1.91
16820361--16820546	94	2.0	94	87	2	266	31	13	24	30	1.94
16830569--16830628	16	3.4	16	68	27	50	13	18	28	40	1.88
16830566--16830659	37	2.5	37	98	0	179	13	18	26	41	1.88
16830585--16830654	21	3.6	21	66	25	62	12	18	27	41	1.87
16831495--16831554	22	2.7	22	94	0	102	23	5	31	40	1.76
16833638--16833689	21	2.5	20	73	11	52	25	1	3	69	1.16
16833646--16833701	27	2.0	28	83	10	71	23	3	5	67	1.27
16835324--16835374	25	2.0	24	82	14	59	49	1	1	47	1.24
16854017--16854057	15	2.7	15	85	10	57	70	0	26	2	0.99
16858838--16858864	12	2.2	12	100	0	54	51	14	0	33	1.43
16859060--16859102	22	2.0	22	86	9	61	34	23	25	16	1.95
16871193--16871235	20	2.2	20	83	8	52	58	4	4	32	1.39
16873518--16873563	20	2.3	19	82	17	58	80	2	15	2	0.91
16873521--16873569	21	2.4	19	83	16	62	79	4	14	2	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16877950--16878206	129	2.0	129	89	1	390	27	29	15	28	1.96
16879527--16879573	22	2.1	22	84	7	60	0	27	6	65	1.16
16885512--16885557	18	2.7	17	80	9	58	45	0	4	50	1.21
16886344--16886390	23	2.0	23	100	0	94	38	12	12	36	1.82
16886893--16887039	59	2.4	61	92	2	235	46	6	12	34	1.68
16892639--16892705	27	2.5	27	92	0	107	22	23	22	31	1.98
16893066--16893305	126	1.9	126	92	0	408	34	21	3	40	1.71
16897278--16897302	9	2.8	9	100	0	50	80	0	0	20	0.72
16898642--16898897	47	5.4	47	80	0	251	21	21	22	34	1.97
16898642--16898897	94	2.7	94	80	0	287	21	21	22	34	1.97
16906374--16906419	19	2.2	22	77	11	53	30	0	30	39	1.57
16908087--16908111	5	5.0	5	100	0	50	20	80	0	0	0.72
16925152--16925192	14	2.9	14	96	3	73	36	0	21	41	1.54
16925639--16925750	39	2.9	39	76	0	134	31	19	15	33	1.93
16939838--16939880	3	14.7	3	90	4	70	69	0	30	0	0.88
16939839--16939879	20	2.0	20	95	0	73	68	0	31	0	0.90
16942715--16942756	16	2.6	16	88	3	57	4	28	2	64	1.26
16943483--16943509	12	2.2	12	100	0	54	44	7	33	14	1.73
16944177--16944232	16	3.6	16	72	18	55	28	17	28	25	1.98
16944168--16944241	30	2.5	31	84	8	100	28	17	29	24	1.97
16944188--16944259	30	2.4	30	83	4	83	31	11	29	27	1.91
16945480--16945529	18	2.8	17	81	3	64	48	0	2	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16947399--16947429	16	1.9	16	93	0	53	29	0	0	70	0.87
16965393--16965435	12	3.7	12	82	17	63	0	32	0	67	0.91
16965387--16965425	13	2.9	15	78	21	50	0	30	0	69	0.89
16965394--16965434	8	5.1	8	80	19	50	0	34	0	65	0.93
16973567--16973707	66	2.1	66	92	0	237	29	25	21	24	1.99
16976732--16976765	16	2.1	16	88	0	50	23	0	20	55	1.43
16977801--16977874	31	2.4	30	78	12	80	28	12	2	56	1.49
16977835--16977895	29	2.0	30	84	12	81	21	19	3	55	1.57
16982661--16982710	6	6.9	7	80	19	50	80	0	20	0	0.72
16982653--16982715	17	3.6	18	77	16	60	76	0	23	0	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126