genome.fa.s1.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  101  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30652896--30652922	14	1.9	14	100	0	54	29	11	7	51	1.64
30653544--30653620	23	3.3	23	85	7	111	9	27	20	42	1.82
30653542--30653643	46	2.2	46	81	6	118	9	27	22	40	1.85
30653613--30653679	23	3.0	22	82	8	64	13	19	29	37	1.90
30658810--30658869	5	11.6	5	77	10	59	75	5	1	18	1.07
30667211--30667253	4	10.8	4	100	0	86	25	0	23	51	1.49
30668070--30668130	24	2.4	25	81	5	70	52	0	1	45	1.10
30669599--30669642	20	2.2	20	84	8	54	6	6	20	65	1.39
30669636--30669720	23	3.8	23	80	10	97	9	8	18	63	1.49
30669637--30669690	22	2.4	21	90	3	72	11	5	20	62	1.47
30669672--30669799	12	10.9	12	83	3	118	3	2	22	71	1.14
30669672--30669799	35	3.7	35	86	4	159	3	2	22	71	1.14
30669722--30669799	3	26.7	3	79	14	83	1	0	26	71	0.93
30670482--30670511	14	2.1	14	93	0	51	46	0	0	53	1.00
30670762--30670810	17	2.9	17	75	9	55	55	0	0	44	0.99
30670762--30670829	36	1.9	34	85	11	93	52	0	0	47	1.00
30673916--30673962	17	2.8	17	80	6	51	65	8	2	23	1.31
30680222--30680297	6	13.2	6	72	17	63	42	1	2	53	1.23
30680222--30680312	34	2.7	34	88	6	132	45	1	2	51	1.20
30680222--30680297	11	6.6	12	72	17	63	42	1	2	53	1.23
30680222--30680312	17	5.4	17	84	7	114	45	1	2	51	1.20
30680688--30680726	20	1.9	20	84	5	51	46	23	12	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30680925--30680975	3	17.0	3	100	0	102	33	0	0	66	0.92
30682284--30682535	30	8.4	29	82	5	263	38	18	2	40	1.64
30682284--30682536	91	2.8	90	84	7	325	39	18	2	39	1.64
30686842--30686881	21	1.9	21	89	0	62	47	0	5	47	1.24
30690575--30690614	19	2.2	19	86	4	55	40	0	2	57	1.12
30691385--30691426	22	1.9	22	95	0	75	50	0	2	47	1.14
30691386--30691433	22	2.2	22	88	0	69	54	0	4	41	1.20
30691949--30691988	19	2.1	18	86	9	53	65	5	5	25	1.34
30698721--30698746	13	2.0	13	100	0	52	38	0	23	38	1.55
30702660--30702738	31	2.6	30	84	6	97	35	3	12	48	1.59
30702904--30702993	29	3.0	29	82	8	92	46	10	7	35	1.66
30702913--30702993	31	2.7	30	84	5	101	48	9	6	35	1.62
30709167--30709198	2	16.5	2	93	6	57	0	50	0	50	1.00
30715466--30715502	2	18.5	2	100	0	74	51	0	48	0	1.00
30716699--30716747	24	2.1	23	84	3	62	55	4	2	38	1.31
30717132--30717180	20	2.5	20	87	12	66	57	8	0	34	1.29
30727601--30727626	5	5.2	5	100	0	52	80	0	0	19	0.71
30732098--30732136	15	2.6	15	83	0	51	41	23	15	20	1.90
30739481--30739520	20	1.9	21	90	10	64	7	12	20	60	1.56
30746238--30746265	13	2.2	13	100	0	56	14	14	7	64	1.48
30747261--30747290	9	3.3	9	100	0	60	80	0	20	0	0.72
30754276--30754373	45	2.2	45	87	3	135	48	15	7	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30754869--30754918	19	2.5	20	84	12	68	36	0	6	58	1.23
30759955--30759988	14	2.3	15	90	5	52	38	0	11	50	1.39
30761904--30761958	28	2.0	28	92	0	92	30	16	29	23	1.96
30764587--30764618	11	2.6	13	80	19	50	21	0	21	56	1.43
30767484--30767535	21	2.5	21	81	6	61	28	13	25	32	1.93
30770001--30770071	28	2.7	26	77	12	81	46	1	0	52	1.09
30770666--30770823	59	2.7	59	87	2	201	24	13	12	48	1.78
30774613--30774669	24	2.5	22	82	8	69	52	12	14	21	1.73
30776613--30776661	23	2.1	24	84	3	64	44	4	0	51	1.20
30776656--30776713	27	2.2	26	84	3	80	48	0	1	50	1.11
30777807--30777854	22	2.2	23	81	7	55	41	2	12	43	1.54
30778117--30778181	24	2.7	23	75	13	69	53	6	7	32	1.54
30779265--30779290	2	13.0	2	100	0	52	50	0	0	50	1.00
30782432--30782490	29	2.1	29	93	3	102	35	0	0	64	0.94
30782430--30782493	19	3.5	18	78	16	60	34	0	0	65	0.93
30782430--30782493	9	7.0	9	81	11	69	34	0	0	65	0.93
30784932--30785003	26	2.8	26	82	4	92	33	22	18	26	1.96
30785019--30786661	821	2.0	821	99	0	3277	36	19	9	34	1.85
30795581--30795777	95	2.1	94	83	5	247	39	10	17	32	1.84
30798647--30798705	26	2.2	26	79	8	66	22	25	23	28	1.99
30798663--30798725	27	2.3	26	81	5	72	20	25	25	28	1.99
30800127--30800279	76	2.0	76	92	0	252	24	28	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30800938--30800967	14	2.1	14	93	0	51	43	13	3	40	1.60
30806182--30806225	20	2.3	18	84	7	52	40	2	0	56	1.11
30806216--30806251	19	1.9	19	94	5	65	30	2	5	61	1.33
30808010--30808064	18	3.1	18	81	0	65	36	32	20	10	1.87
30809873--30809932	31	1.9	32	86	3	86	36	6	8	48	1.60
30811094--30811132	20	2.0	20	94	0	69	30	25	0	43	1.55
30811206--30811246	17	2.4	17	87	4	55	48	2	26	21	1.63
30816488--30816525	20	1.9	20	100	0	76	26	23	2	47	1.65
30822088--30822180	42	2.2	42	90	0	150	36	24	12	25	1.91
30843058--30843094	18	2.1	18	89	0	56	24	27	0	48	1.51
30843391--30843426	18	2.1	18	89	5	56	33	25	0	41	1.55
30847512--30847538	13	2.1	13	100	0	54	44	11	44	0	1.39
30850032--30850100	34	2.0	34	91	0	111	27	1	20	50	1.56
30854608--30854676	34	2.0	34	97	0	129	26	1	23	49	1.59
30855101--30855136	9	4.0	9	92	0	54	25	11	13	50	1.75
30855102--30855139	18	2.1	18	95	0	67	26	10	13	50	1.73
30859838--30859903	14	4.3	15	73	19	55	45	0	1	53	1.09
30859920--30859963	13	3.3	14	84	9	56	50	0	0	50	1.00
30859922--30859961	14	2.8	16	78	21	52	47	0	0	52	1.00
30859953--30860013	26	2.1	29	85	14	83	55	0	0	44	0.99
30861636--30861723	20	4.3	20	76	12	90	59	4	0	36	1.18
30861638--30861721	39	2.1	41	82	8	102	57	4	0	38	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30864912--30865080	60	2.8	62	84	7	208	26	18	10	44	1.82
30864912--30865079	31	5.5	31	65	17	93	26	18	10	44	1.82
30865219--30865392	88	2.0	89	84	7	230	46	13	16	23	1.82
30865616--30865652	18	2.1	18	94	0	65	40	18	16	24	1.90
30873731--30873778	25	1.9	25	82	0	60	35	0	8	56	1.30
30875104--30875145	18	2.3	20	76	23	56	66	4	4	23	1.30
30891780--30891834	27	2.0	27	82	6	67	54	10	3	30	1.52
30894055--30894082	3	9.3	3	100	0	56	32	0	32	35	1.58
30899819--30899927	37	2.9	37	98	1	209	38	5	20	35	1.76
30903253--30903309	27	2.1	27	100	0	114	54	12	0	33	1.38
30918518--30918583	30	2.2	31	88	2	98	25	24	18	31	1.97
30919819--30919876	29	2.0	29	86	3	80	41	6	13	37	1.72
30919825--30919890	30	2.2	29	83	2	78	40	6	12	40	1.67
30921805--30921835	4	7.8	4	92	0	53	48	25	3	22	1.66
30925033--30925058	11	2.4	11	100	0	52	73	0	0	26	0.84
30925192--30925243	26	2.0	26	84	0	68	59	3	15	21	1.52
30927992--30928086	26	3.6	26	74	5	66	34	1	12	51	1.47
30928122--30928227	53	2.0	55	88	7	164	29	0	23	47	1.52
30928111--30928240	53	2.5	53	82	12	160	27	0	23	47	1.57
30928254--30928304	21	2.4	21	93	0	93	21	0	25	52	1.47
30928295--30928332	14	2.7	14	84	8	51	21	0	26	52	1.47
30929115--30929154	21	1.9	21	85	10	55	22	20	32	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30932507--30932563	27	2.1	28	86	3	80	22	28	26	22	1.99
30947580--30947639	30	2.1	28	82	11	70	43	6	5	45	1.52
30950731--30950767	16	2.3	16	86	13	58	40	0	0	59	0.97
30950779--30950818	20	2.1	18	86	9	53	60	0	0	40	0.97
30963749--30964003	59	4.4	59	88	4	383	34	1	30	33	1.69
30963749--30964000	117	2.2	117	90	4	393	34	1	29	33	1.69
30963777--30964015	29	8.2	29	68	25	141	33	1	31	33	1.68
30965854--30965904	26	1.9	27	88	11	79	15	17	25	41	1.89
30965854--30965905	13	3.9	13	85	10	70	15	17	25	42	1.88
30965938--30965974	17	2.2	17	90	0	56	37	0	2	59	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126