genome.fa.s1.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  106  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31931961--31932026	11	5.9	11	76	13	55	56	1	1	40	1.18
31931992--31932035	17	2.6	18	85	10	65	59	4	0	36	1.18
31932286--31932423	51	2.7	51	91	3	217	28	19	15	36	1.93
31932291--31932953	143	4.6	146	77	15	662	28	17	19	34	1.95
31932350--31932600	92	2.8	91	89	4	364	29	18	18	33	1.95
31932534--31933133	51	12.4	51	75	15	458	28	17	19	34	1.95
31932466--31932896	194	2.2	194	97	0	819	27	17	19	34	1.95
31932534--31933038	244	2.1	245	92	3	831	28	17	19	34	1.95
31932880--31933173	91	3.2	91	86	2	396	29	18	18	33	1.95
31933100--31933694	93	6.4	93	91	2	921	37	16	12	34	1.86
31933100--31933694	185	3.2	186	92	2	957	37	16	12	34	1.86
31935054--31935104	16	3.1	16	85	2	75	7	7	0	84	0.78
31935062--31935091	9	3.4	9	95	4	53	10	0	0	90	0.47
31935054--31935113	17	3.6	17	82	8	70	6	8	1	83	0.88
31935062--31935109	8	5.8	8	79	16	53	8	4	2	85	0.80
31935922--31936028	5	21.4	5	77	13	87	0	5	14	80	0.88
31935924--31936022	25	3.8	26	80	6	105	0	6	14	79	0.90
31940491--31940688	28	6.8	27	68	21	89	36	6	26	30	1.81
31940513--31940688	59	3.0	59	83	1	210	36	6	26	30	1.81
31940639--31940862	90	2.5	89	86	5	256	37	2	20	38	1.67
31940664--31940862	30	6.6	30	85	2	256	37	2	21	38	1.67
31940664--31940867	90	2.2	90	88	1	291	37	2	21	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31942325--31942390	6	11.7	6	73	12	59	57	3	0	39	1.14
31942325--31942393	11	6.2	11	75	12	61	55	2	0	42	1.15
31942327--31942363	17	2.2	17	100	0	74	56	5	0	37	1.22
31942332--31942399	17	4.1	16	85	11	75	57	4	0	38	1.19
31942466--31942533	27	2.6	27	80	13	79	51	4	7	36	1.50
31942463--31942549	27	3.3	27	78	9	72	45	5	11	36	1.64
31942555--31942589	18	1.9	18	88	0	52	42	2	14	40	1.60
31942684--31942728	18	2.4	18	85	3	54	55	0	8	35	1.31
31942702--31942917	6	34.7	6	68	17	75	53	0	6	39	1.33
31942714--31942769	22	2.6	21	77	5	58	57	0	5	37	1.22
31942765--31942818	23	2.3	23	83	0	63	53	1	1	42	1.22
31942697--31942928	28	8.0	28	69	17	73	53	0	6	38	1.34
31942840--31942928	23	3.9	23	82	2	81	53	1	10	34	1.42
31942666--31942893	86	2.7	89	74	13	221	53	1	7	38	1.38
31942851--31942928	17	4.6	17	76	6	68	55	0	10	34	1.34
31942851--31942928	11	6.9	11	77	12	61	55	0	10	34	1.34
31945683--31945961	116	2.5	113	87	6	388	32	10	22	35	1.87
31945683--31945983	115	2.6	113	80	10	315	33	10	20	34	1.88
31946505--31946539	18	2.0	17	88	5	52	31	2	14	51	1.57
31948459--31948537	11	7.0	11	72	15	63	40	0	3	55	1.18
31948459--31948536	17	4.6	17	88	4	113	39	0	3	56	1.18
31948504--31948556	23	2.3	23	87	6	72	45	1	1	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31950254--31950690	29	14.9	29	75	11	207	36	24	2	35	1.69
31950267--31950690	30	14.5	30	79	8	254	37	24	2	36	1.68
31950259--31950757	59	8.5	58	79	5	359	36	26	2	35	1.71
31950411--31950767	29	12.3	30	78	10	203	34	26	4	34	1.76
31950318--31950757	117	3.8	116	79	4	406	35	26	3	35	1.73
31962627--31962907	153	1.8	151	89	3	438	34	18	24	22	1.96
31962770--31964416	209	8.0	209	87	3	2107	36	18	22	22	1.95
31963256--31963321	37	1.9	33	82	14	80	30	16	25	27	1.97
31962768--31964417	419	4.0	419	86	3	2085	36	18	22	22	1.95
31964719--31964828	17	6.4	17	82	3	132	40	0	3	55	1.17
31964719--31964828	23	4.8	24	83	7	122	40	0	3	55	1.17
31965527--31965567	13	2.9	15	85	10	59	53	2	4	39	1.35
31966505--31966645	30	4.7	29	78	6	113	41	24	2	31	1.69
31966535--31966778	30	8.2	29	77	11	169	38	23	2	34	1.70
31966622--31966818	29	6.8	29	77	6	157	35	27	2	34	1.71
31966622--31966791	59	2.9	57	82	9	191	35	27	2	34	1.70
31969866--31969904	20	2.0	20	85	10	53	58	7	7	25	1.52
31979045--31979128	34	2.5	35	78	7	93	10	2	42	44	1.52
31979057--31979123	35	1.9	35	84	6	91	11	1	41	44	1.50
31979166--31979196	5	6.0	5	96	3	53	22	0	0	77	0.77
31979184--31979231	17	2.9	16	82	11	53	12	0	16	70	1.16
31979766--31980204	39	11.3	39	68	4	231	24	19	33	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31979766--31980211	78	5.7	77	82	3	446	25	19	32	23	1.97
31979766--31980211	156	2.9	155	83	2	554	25	19	32	23	1.97
31981621--31981665	6	7.8	6	79	16	51	0	17	0	82	0.68
31981623--31981665	17	2.6	16	81	7	50	0	16	0	83	0.64
31986478--31986592	57	2.0	57	100	0	230	39	15	15	29	1.89
31991136--31991169	17	2.0	17	94	0	59	32	17	2	47	1.63
31993783--31994218	193	2.3	194	83	2	547	28	17	25	27	1.97
31995965--31996008	13	3.2	13	87	9	61	40	4	0	54	1.21
31997653--31997684	5	6.6	5	92	7	57	0	21	0	78	0.76
31997653--31997682	9	3.2	9	95	4	51	0	20	0	80	0.72
31997657--31997684	14	2.0	14	100	0	56	0	21	0	78	0.75
31998950--31999126	47	3.8	47	76	3	167	23	24	16	35	1.95
31998948--31999126	94	1.9	94	83	2	234	22	24	17	35	1.95
32000042--32000091	2	25.0	2	95	0	91	50	48	2	0	1.12
32001992--32002033	9	4.6	9	80	16	50	76	7	0	16	1.00
32005536--32005573	20	1.9	20	88	0	58	57	0	0	42	0.98
32011321--32011401	30	2.7	31	81	7	96	23	11	18	46	1.81
32012422--32012470	17	2.8	17	87	3	62	40	4	2	53	1.32
32013182--32013236	3	18.0	3	96	3	101	32	1	0	65	1.03
32014462--32014740	29	9.4	30	76	11	200	34	25	4	36	1.76
32014447--32014740	59	5.0	59	86	4	351	33	25	4	35	1.77
32014511--32014890	59	6.4	58	83	6	378	35	27	3	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32014511--32014827	29	10.7	30	76	10	269	35	25	3	35	1.73
32014560--32014915	117	3.0	116	79	6	283	33	27	5	33	1.79
32016680--32016726	24	2.0	24	91	0	76	25	23	27	23	2.00
32016836--32016880	23	2.0	23	90	0	72	44	15	20	20	1.87
32019448--32019486	15	2.4	17	79	16	55	23	2	0	74	0.94
32019435--32019491	21	2.5	23	83	11	73	28	1	3	66	1.18
32019452--32019487	15	2.3	16	90	4	56	25	2	0	72	0.98
32025681--32025745	20	3.4	19	78	8	60	4	4	16	73	1.17
32025680--32025746	29	2.3	30	82	5	75	4	4	17	73	1.18
32025749--32025799	12	4.3	12	80	2	50	5	3	19	70	1.24
32029414--32029463	3	17.3	3	83	8	68	36	0	2	62	1.07
32032522--32032664	41	3.4	42	84	6	175	25	27	11	36	1.90
32033466--32033513	22	2.2	21	77	3	51	37	16	0	45	1.48
32034213--32034262	21	2.4	19	78	18	55	30	14	24	32	1.94
32034840--32034878	17	2.3	18	82	13	55	15	5	2	76	1.06
32038573--32038726	54	2.7	55	78	12	161	33	13	18	34	1.90
32039841--32039908	24	3.1	22	84	12	86	7	8	52	30	1.60
32039849--32039903	24	2.3	24	96	0	101	7	9	50	32	1.61
32039923--32039965	18	2.4	18	88	0	59	11	6	62	18	1.50
32043236--32043278	19	2.3	19	84	8	52	58	4	0	37	1.19
32045435--32045462	6	4.7	6	100	0	56	35	0	0	64	0.94
32050761--32050807	21	2.2	21	96	0	85	6	6	59	27	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32050847--32050883	15	2.5	15	90	0	56	16	2	64	16	1.40
32050962--32050996	6	5.8	6	89	0	52	11	17	68	2	1.31
32050935--32050999	30	2.2	30	85	0	85	13	15	63	7	1.51
32050968--32051001	12	2.8	12	90	0	50	11	14	67	5	1.39
32055722--32055756	16	2.1	17	89	5	54	22	0	2	74	0.95
32062439--32062477	17	2.2	19	86	9	55	12	2	7	76	1.09
32064774--32064821	19	2.5	20	83	13	64	43	2	4	50	1.33
32065879--32065955	31	2.5	30	77	12	84	37	12	7	41	1.73
32067329--32067358	2	15.0	2	100	0	60	50	0	0	50	1.00
32079084--32079118	17	2.1	17	88	0	52	28	22	0	48	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126