genome.fa.s1.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  54  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15977192--15977246	26	2.1	26	86	6	76	36	10	9	43	1.72
15978138--15978303	82	2.0	83	91	1	271	24	8	22	43	1.81
15982327--15982365	20	2.0	19	90	5	60	64	0	7	28	1.21
15982355--15982390	15	2.3	15	90	4	54	61	2	8	27	1.39
15982795--15982922	33	3.8	34	79	10	129	67	16	6	9	1.38
15982827--15983000	22	7.6	22	65	20	81	68	17	4	8	1.32
15982789--15982894	12	9.3	12	71	12	55	68	16	4	9	1.33
15982796--15982921	67	1.9	67	83	6	166	68	15	6	9	1.37
15982873--15982944	31	2.2	31	87	9	99	66	18	8	6	1.40
15982871--15982997	37	3.6	34	73	17	100	68	19	4	7	1.31
15982927--15982981	18	3.0	18	86	2	74	72	16	1	9	1.18
15982930--15982995	19	3.4	19	81	6	71	71	19	1	7	1.18
15982949--15982995	21	2.3	21	89	10	64	72	21	0	6	1.07
15983238--15983338	15	6.1	15	74	23	80	63	0	4	30	1.22
15983228--15983351	37	3.5	36	69	18	107	62	0	4	32	1.19
15983281--15983402	56	2.2	56	89	5	187	61	0	5	31	1.25
15983194--15983346	68	2.2	71	90	3	240	60	1	3	33	1.26
15983373--15983499	64	2.0	63	90	1	200	56	3	6	33	1.40
15983335--15983586	134	1.9	133	82	8	314	56	1	8	33	1.39
15983597--15983631	18	1.9	18	94	0	61	25	11	31	31	1.91
15984353--15984508	69	2.3	69	85	1	206	33	27	18	20	1.96
15984353--15984538	68	2.7	69	81	2	232	33	28	18	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15987258--15987301	20	2.2	20	88	8	63	25	0	2	72	0.96
15999928--16000002	28	2.7	27	80	15	91	52	0	0	48	1.00
16004890--16004933	2	22.5	2	95	4	81	50	0	0	50	1.00
16006567--16006652	35	2.5	35	86	0	109	29	17	25	27	1.97
16007952--16008008	21	2.5	22	83	11	71	40	28	7	24	1.81
16023566--16023657	44	2.0	46	83	8	118	30	4	26	39	1.75
16023753--16023906	57	2.7	57	81	6	177	50	3	2	43	1.32
16025315--16025407	34	2.8	34	83	4	91	40	9	9	39	1.71
16025332--16025407	34	2.2	34	88	0	107	38	11	11	38	1.79
16033330--16033428	38	2.5	40	75	8	105	30	28	18	23	1.97
16033531--16033569	6	6.5	6	87	0	51	23	30	0	46	1.53
16037250--16037293	23	1.9	23	95	0	79	34	18	13	34	1.90
16037303--16037356	18	2.9	18	86	5	63	48	5	0	46	1.25
16039032--16039056	12	2.1	12	100	0	50	72	8	0	20	1.10
16039396--16039441	20	2.3	20	92	7	76	45	2	21	30	1.64
16041278--16041385	42	2.6	41	82	10	112	29	25	11	33	1.91
16048582--16048685	25	4.0	26	83	5	120	32	0	12	54	1.38
16048699--16048757	21	2.8	21	77	10	66	27	1	20	50	1.57
16048691--16048766	29	2.6	28	79	12	82	26	1	21	51	1.56
16048786--16048822	13	2.6	15	75	16	51	13	0	37	48	1.43
16048772--16048832	21	2.9	21	78	7	70	22	0	29	47	1.52
16049848--16049896	8	6.1	8	86	6	64	30	0	22	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16050417--16050468	27	1.9	27	88	0	77	26	30	15	26	1.96
16053392--16053586	88	2.2	88	87	3	268	32	25	20	21	1.98
16056910--16056965	27	2.1	27	86	6	78	76	3	0	19	0.93
16057151--16057195	22	2.0	23	86	4	65	53	6	2	37	1.40
16068020--16068066	12	4.4	11	78	21	55	31	2	0	65	1.04
16080923--16080970	25	2.0	25	84	8	64	52	16	22	8	1.71
16080997--16081027	3	10.3	3	100	0	62	67	0	0	32	0.91
16096153--16096275	24	5.1	24	85	5	151	30	23	21	25	1.99
16096165--16096275	48	2.3	48	90	0	177	30	23	21	24	1.99
16096984--16097033	21	2.4	21	80	6	57	24	16	28	32	1.96
16100964--16100997	12	2.8	12	86	0	50	76	2	2	17	1.04
16107754--16107848	43	2.2	43	84	1	120	32	10	20	36	1.86
16120161--16120194	14	2.5	14	95	4	61	73	0	14	11	1.10
16124201--16124250	12	4.2	12	80	10	57	2	34	0	64	1.05
16131552--16131868	158	2.0	158	96	0	589	34	11	15	38	1.84
16137173--16137279	57	1.9	56	86	9	155	42	6	2	48	1.43
16137216--16137317	32	3.3	30	75	11	98	46	5	1	46	1.38
16146276--16146300	12	2.1	12	100	0	50	16	28	16	40	1.89
16146262--16146327	30	2.2	30	83	5	80	16	31	12	39	1.85
16146281--16146354	18	4.4	18	74	19	79	9	31	12	47	1.73
16146276--16146349	30	2.5	30	86	0	103	12	29	14	43	1.82
16147895--16147950	28	2.0	28	82	6	69	50	14	1	33	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16151437--16151468	12	2.6	13	85	14	50	40	21	0	37	1.54
16152117--16152154	20	2.0	20	89	5	60	50	15	15	18	1.79
16155763--16155800	19	2.0	19	89	0	58	26	21	23	28	1.99
16159256--16159319	33	1.9	33	84	6	85	31	15	28	25	1.96
16161551--16161592	21	2.0	21	85	0	57	14	11	33	40	1.82
16163643--16163730	42	2.1	42	95	0	158	37	27	11	23	1.89
16166629--16166697	21	3.3	21	91	0	111	34	1	33	30	1.67
16166629--16166697	7	9.9	7	88	0	84	34	1	33	30	1.67
16166774--16166803	15	1.9	16	93	6	53	33	6	23	36	1.81
16168994--16169040	23	2.1	23	84	11	62	46	0	2	51	1.13
16170959--16171030	29	2.5	28	84	13	85	38	23	5	31	1.78
16170976--16171043	29	2.3	30	82	9	79	30	27	5	35	1.81
16170994--16171130	58	2.4	58	81	3	161	33	27	2	36	1.72
16170992--16171153	28	5.7	28	69	17	84	34	24	3	37	1.73
16171265--16171295	16	2.0	16	93	6	55	16	12	6	64	1.47
16175328--16175378	19	2.8	18	80	11	59	82	0	17	0	0.67
16175330--16175377	11	4.4	11	82	12	55	81	0	18	0	0.70
16177117--16177412	101	3.0	100	83	6	309	40	22	24	12	1.88
16177233--16177476	49	5.0	49	87	0	308	38	22	26	12	1.90
16177133--16177476	147	2.3	147	81	5	361	39	21	25	13	1.90
16177851--16178435	201	2.9	200	86	3	760	35	21	22	21	1.96
16177851--16178498	206	3.2	204	84	3	774	35	21	22	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16178834--16178912	6	13.8	6	74	15	60	39	2	3	54	1.32
16178823--16178862	17	2.4	17	86	0	53	40	5	2	52	1.37
16178834--16178929	23	4.2	22	75	17	81	40	2	3	54	1.28
16178834--16178929	17	5.6	17	82	8	97	40	2	3	54	1.28
16178838--16178913	11	6.8	10	76	16	53	39	2	3	53	1.33
16179176--16179255	28	2.8	29	87	11	112	32	27	7	32	1.85
16179206--16179343	58	2.4	58	83	8	167	30	29	5	34	1.79
16179235--16179338	27	3.5	28	66	22	70	31	25	4	37	1.77
16197127--16197168	22	1.9	22	85	9	59	57	11	0	30	1.35
16197135--16197168	15	2.3	15	90	5	52	55	14	0	29	1.40
16199373--16199606	101	2.3	98	86	5	301	40	22	22	14	1.90
16199373--16199644	101	2.7	101	82	8	254	41	22	22	13	1.89
16199355--16199852	49	10.1	49	77	8	359	38	22	24	13	1.90
16199355--16199852	98	5.0	96	79	9	396	38	22	24	13	1.90
16200227--16200860	201	3.1	200	86	2	811	35	21	22	20	1.96
16201218--16201324	17	6.2	17	73	13	94	38	3	2	55	1.33
16201223--16201307	36	2.4	36	81	11	104	36	4	2	56	1.33
16201574--16201656	29	2.8	30	81	5	107	34	27	6	31	1.81
16201665--16201800	57	2.4	56	82	6	166	33	25	2	37	1.71
16201665--16201754	30	3.1	29	71	19	80	37	24	1	36	1.63
16203453--16203493	21	1.9	22	95	5	75	43	0	4	51	1.23
16203867--16203920	23	2.3	23	78	6	56	51	1	1	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16205595--16205627	13	2.5	13	95	0	57	12	30	27	30	1.92
16208321--16208380	30	2.0	30	93	0	102	31	8	10	50	1.66
16215704--16215749	20	2.3	20	85	10	60	43	17	8	30	1.79
16218545--16218597	21	2.5	21	81	6	63	28	26	11	33	1.91
16227512--16227646	62	2.2	62	82	2	164	26	28	20	23	1.99
16231898--16231933	2	18.5	2	94	5	65	50	0	0	50	1.00
16233375--16233417	18	2.4	18	84	7	52	65	4	4	25	1.32
16233630--16233896	43	6.2	43	87	0	354	28	27	17	25	1.98
16235531--16235593	19	3.3	19	72	18	58	25	0	4	69	1.07
16240268--16240509	41	6.0	41	85	2	294	16	28	22	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126