genome.fa.s1.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  39  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11712529--11712573	21	2.1	21	95	0	81	33	24	13	28	1.93
11714970--11715085	57	2.0	57	93	0	196	38	4	16	40	1.68
11722626--11722650	9	2.8	9	100	0	50	44	0	0	56	0.99
11724852--11724898	18	2.4	19	86	10	60	34	0	6	59	1.23
11726763--11726861	24	4.1	25	75	11	75	33	25	18	23	1.97
11726880--11727031	82	1.9	82	85	2	216	35	26	17	21	1.95
11730436--11730468	3	11.0	3	100	0	66	33	0	0	66	0.92
11735005--11735049	19	2.2	21	84	7	58	37	2	2	57	1.23
11735031--11735072	14	2.9	15	75	7	50	57	0	0	42	0.99
11735036--11735086	21	2.4	22	90	6	79	62	0	1	35	1.06
11747721--11747750	6	5.0	6	95	0	51	13	33	20	33	1.91
11748018--11748113	28	3.3	28	74	12	68	63	2	0	34	1.06
11754650--11754944	146	2.0	146	97	0	554	33	12	25	29	1.92
11762818--11762877	27	2.3	26	80	16	70	51	16	3	28	1.60
11764307--11764376	30	2.3	29	80	7	86	42	2	25	28	1.69
11764338--11764464	29	4.3	29	74	6	94	36	7	23	33	1.82
11764354--11764494	59	2.4	59	80	9	164	34	6	21	36	1.79
11764325--11764483	30	5.4	30	76	7	148	35	6	22	35	1.80
11765479--11765515	19	2.0	18	89	5	56	0	18	8	72	1.08
11767765--11767824	29	2.0	30	87	9	88	25	6	6	61	1.45
11769011--11769053	22	1.9	23	85	4	61	69	2	2	25	1.12
11771073--11771116	21	2.0	22	87	12	65	47	4	0	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11771404--11771447	22	2.0	22	86	8	63	50	0	0	50	1.00
11772575--11772613	18	2.2	18	86	9	53	46	0	7	46	1.31
11775387--11775458	30	2.4	31	81	6	85	48	16	12	22	1.79
11776923--11776988	31	2.2	31	91	2	107	25	12	22	39	1.89
11781193--11781221	6	4.8	6	100	0	58	51	0	34	13	1.42
11781833--11781870	2	19.0	2	86	10	51	50	0	5	44	1.24
11781834--11781875	20	2.1	20	95	0	75	47	0	11	40	1.40
11781920--11781953	18	1.9	17	88	5	50	41	0	38	20	1.53
11785059--11785169	36	3.1	36	88	0	168	32	9	19	38	1.83
11785539--11785591	23	2.4	22	76	14	56	52	0	11	35	1.37
11786440--11786684	52	4.7	51	78	4	211	26	14	23	34	1.94
11787300--11787340	21	2.0	21	85	0	55	29	7	24	39	1.82
11797392--11797446	18	3.2	17	85	10	69	61	7	0	30	1.23
11798112--11798136	7	3.6	7	100	0	50	0	28	0	72	0.86
11803258--11803294	18	2.1	18	89	0	56	48	0	27	24	1.51
11806977--11807039	15	4.2	15	79	0	72	28	17	23	30	1.97
11806986--11807046	15	4.1	15	76	0	50	24	16	26	32	1.96
11807230--11807278	23	2.1	23	92	0	80	34	6	26	32	1.81
11807269--11807316	22	2.2	22	88	7	71	52	4	20	22	1.64
11807269--11807332	23	2.9	22	84	9	69	46	7	20	25	1.77
11808808--11808863	26	2.1	27	90	9	98	46	10	10	32	1.73
11813717--11813855	43	3.2	43	89	0	206	19	28	24	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11814193--11814340	66	2.2	66	85	2	199	16	22	14	45	1.85
11820808--11821192	41	9.3	41	82	3	432	22	27	27	23	1.99
11821177--11821273	40	2.5	39	77	3	104	19	22	22	35	1.96
11822887--11822936	16	3.2	16	72	13	50	48	2	2	48	1.24
11836093--11836120	3	9.3	3	100	0	56	67	0	0	32	0.91
11842175--11842202	3	9.3	3	100	0	56	67	0	0	32	0.91
11844219--11844262	13	3.5	13	78	6	54	20	22	22	34	1.97
11844219--11844273	25	2.2	25	86	0	74	20	25	21	32	1.97
11846217--11846258	14	3.0	14	78	21	52	66	4	9	19	1.38
11846408--11846722	29	11.0	29	77	9	272	34	3	27	33	1.75
11847678--11847738	27	2.2	28	85	8	81	34	1	1	62	1.15
11848237--11848317	6	13.8	6	76	12	71	56	2	0	40	1.12
11848244--11848312	17	4.1	17	88	3	104	57	2	0	39	1.13
11848239--11848327	7	13.7	7	72	18	61	57	3	0	39	1.15
11848784--11849715	78	12.0	78	83	2	998	25	19	30	25	1.98
11848792--11850144	39	34.7	39	68	5	550	25	19	29	25	1.98
11848792--11849715	234	4.0	234	83	3	1115	25	19	30	25	1.98
11848792--11849953	78	14.9	80	80	7	732	25	19	29	25	1.98
11849104--11850104	234	4.3	232	76	10	723	25	19	30	25	1.98
11849689--11850149	156	3.0	154	86	3	613	26	19	29	25	1.99
11850428--11850772	49	7.0	49	78	4	300	18	31	17	32	1.94
11851749--11851792	11	3.9	11	80	14	54	0	20	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11851714--11851787	23	3.2	23	79	14	82	2	18	1	77	0.97
11854765--11854812	8	5.5	8	81	18	60	35	10	22	31	1.88
11854771--11854806	10	3.8	10	85	14	58	33	11	22	33	1.89
11854765--11854812	18	2.7	18	100	0	96	35	10	22	31	1.88
11856488--11856522	14	2.4	15	90	4	54	71	0	5	22	1.07
11856680--11857041	57	6.3	57	81	7	396	35	2	27	34	1.72
11856637--11857081	86	5.1	84	78	9	380	35	3	26	34	1.73
11856681--11857085	29	14.1	28	80	8	381	35	2	27	33	1.72
11858048--11858108	27	2.2	28	88	2	88	36	0	1	62	1.05
11858577--11858607	15	2.1	15	93	0	53	19	6	16	58	1.59
11858606--11858698	6	15.8	6	70	11	59	55	3	1	39	1.23
11858614--11858700	17	5.1	17	83	5	113	57	3	1	37	1.23
11858616--11858700	35	2.5	33	90	7	134	57	3	1	37	1.23
11859567--11859727	30	5.3	30	81	3	180	32	4	22	40	1.74
11859567--11859751	60	3.1	60	81	3	201	32	3	23	40	1.72
11860818--11860974	50	3.0	49	76	18	147	49	3	0	47	1.17
11861533--11861798	40	6.7	40	84	3	315	27	16	24	31	1.97
11861532--11861798	119	2.2	119	84	3	333	26	16	25	31	1.97
11861533--11861806	79	3.5	80	85	3	331	27	17	24	31	1.97
11861996--11862162	50	3.4	49	79	11	164	20	22	20	35	1.96
11862006--11862150	46	3.0	47	81	9	168	20	23	18	37	1.94
11862028--11862164	50	2.8	50	85	6	167	19	21	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11866302--11866330	14	2.1	14	100	0	58	20	20	20	37	1.94
11873555--11873698	30	4.8	30	82	4	148	37	3	20	38	1.70
11873557--11873712	60	2.6	60	79	5	172	37	3	21	37	1.69
11874730--11874776	23	2.1	22	84	4	58	17	2	23	57	1.50
11875265--11875329	26	2.5	27	82	7	89	36	23	13	26	1.92
11881439--11881481	21	2.1	20	91	4	68	62	0	37	0	0.95
11881820--11881862	5	8.4	5	84	5	50	27	0	0	72	0.85
11882303--11882335	3	11.0	3	100	0	66	66	0	0	33	0.92
11894323--11894451	52	2.4	54	84	6	174	25	17	17	39	1.91
11894428--11894512	42	2.0	42	88	4	127	29	15	10	44	1.80
11894909--11895218	118	2.6	117	82	6	351	41	13	15	30	1.85
11894909--11895233	58	5.6	57	72	15	218	40	13	16	29	1.86
11895327--11895397	37	1.9	37	97	2	135	50	4	8	36	1.52
11896711--11896736	6	4.3	6	100	0	52	15	34	0	50	1.45
11908907--11908940	17	2.0	17	88	11	52	23	32	23	20	1.98
11914721--11914759	18	2.2	18	90	0	60	5	38	15	41	1.69
11915459--11915552	49	1.9	49	84	4	127	28	27	14	28	1.96
11920304--11920352	25	2.0	25	91	0	80	57	4	6	32	1.42
11920486--11920520	18	1.9	18	88	0	52	34	20	11	34	1.88
11922828--11922892	30	2.2	30	94	0	112	23	4	15	56	1.57
11926685--11926956	142	1.9	142	99	0	535	29	10	21	38	1.87
11929811--11929836	13	2.0	13	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11935202--11935405	73	2.8	74	80	6	218	41	13	10	34	1.79
11956441--11956493	26	2.0	26	85	7	72	22	1	0	75	0.90
11956469--11956512	20	2.4	17	85	11	52	29	0	0	70	0.88
11956448--11956502	26	2.1	27	82	3	67	25	1	0	72	0.94
11956478--11956517	20	2.0	21	90	5	64	35	2	0	62	1.09
11956518--11956586	28	2.4	28	85	2	84	26	4	1	68	1.17
11956542--11956591	9	5.6	9	77	13	50	24	6	0	70	1.10
11956551--11956603	20	2.7	20	87	0	70	24	7	0	67	1.16
11956534--11956593	28	2.1	28	87	6	86	23	5	1	70	1.16
11961728--11961786	29	2.0	30	90	3	93	30	1	11	55	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126