genome.fa.s1.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  17  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5675111--5675158	2	24.0	2	100	0	96	50	0	0	50	1.00
5680786--5680819	17	2.0	17	94	0	59	61	2	0	35	1.11
5684081--5684112	16	1.9	17	93	6	57	46	0	6	46	1.27
5684469--5684513	20	2.2	20	84	7	56	0	35	2	62	1.08
5684464--5684512	20	2.7	17	75	24	55	0	32	2	65	1.04
5685762--5685800	17	2.3	17	86	0	51	33	10	28	28	1.90
5691256--5691449	97	2.0	97	88	4	293	39	16	17	26	1.91
5691756--5691810	28	2.0	28	82	7	67	34	1	25	38	1.67
5691803--5692011	29	7.2	29	78	3	174	35	3	26	33	1.73
5691904--5691976	27	2.7	27	79	10	67	35	2	27	34	1.71
5691692--5692011	144	2.2	144	78	7	339	36	3	25	34	1.73
5693700--5693763	23	2.8	23	92	2	112	53	3	0	43	1.16
5693700--5693761	11	5.5	11	80	12	65	51	3	0	45	1.17
5693714--5693816	17	5.7	17	68	17	64	50	6	0	41	1.35
5693742--5693816	34	2.2	34	80	0	87	50	6	1	41	1.37
5693700--5693814	23	4.8	23	74	15	90	52	6	0	40	1.32
5694107--5694974	209	4.2	209	87	3	1186	22	21	19	37	1.94
5706314--5706502	97	2.0	95	85	4	254	38	15	18	28	1.91
5707932--5708154	59	3.8	57	77	10	193	37	3	24	34	1.73
5707850--5708159	30	10.6	29	73	10	199	37	4	24	34	1.75
5707976--5708156	59	3.1	59	84	4	222	35	3	23	37	1.71
5709376--5709445	3	22.7	3	77	11	70	34	2	2	60	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5710104--5710138	17	2.1	17	88	0	52	51	0	2	45	1.16
5710254--5710505	30	8.5	30	74	12	173	33	5	27	34	1.79
5710249--5710564	59	5.3	58	75	11	214	32	5	26	35	1.78
5710244--5710568	30	11.0	30	74	9	170	32	5	26	35	1.80
5710270--5710545	90	3.1	90	81	8	246	33	5	27	34	1.79
5711585--5711637	3	17.0	3	77	14	54	35	0	1	62	1.06
5711620--5711662	20	2.2	20	87	8	61	34	0	6	58	1.25
5712287--5712327	11	3.7	11	84	9	57	58	2	0	39	1.11
5713347--5713384	17	2.2	18	90	4	60	26	2	0	71	1.00
5717614--5717666	27	2.0	25	85	7	70	32	5	9	52	1.57
5718855--5718907	24	2.2	24	86	0	70	28	13	11	47	1.77
5720139--5720187	23	2.1	23	88	3	71	73	4	8	14	1.21
5721003--5721045	19	2.3	19	84	8	52	58	4	0	37	1.19
5721350--5721403	4	13.8	4	78	21	53	79	0	3	16	0.87
5721350--5721403	7	6.9	8	82	17	53	79	0	3	16	0.87
5721349--5721404	17	3.2	16	81	16	67	80	0	3	16	0.85
5721348--5721405	18	3.0	18	77	22	64	81	0	3	15	0.83
5725443--5725485	21	2.0	21	95	0	77	23	20	16	39	1.92
5725443--5725496	21	2.6	21	87	0	63	24	18	16	40	1.90
5727035--5727083	23	2.1	23	88	3	71	73	4	8	14	1.21
5727899--5727941	19	2.3	19	84	8	52	58	4	0	37	1.19
5729066--5729132	24	2.8	24	81	0	62	34	11	7	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5729090--5729139	24	2.1	24	96	0	91	24	10	8	58	1.57
5729090--5729149	24	2.5	24	88	0	75	26	11	10	51	1.69
5769166--5769204	18	2.2	18	90	0	60	33	2	2	61	1.23
5771135--5771175	7	6.1	7	78	21	52	12	0	43	43	1.41
5771136--5771173	20	1.9	20	94	0	67	10	0	42	47	1.38
5771334--5771367	18	1.9	17	94	5	59	47	8	11	32	1.71
5777025--5777055	3	10.3	3	92	0	53	29	0	38	32	1.57
5793694--5793754	31	2.0	31	90	6	97	47	13	14	24	1.80
5799853--5799902	23	2.2	23	85	7	66	34	2	4	60	1.27
5799852--5799911	17	3.5	17	81	0	66	31	1	3	63	1.20
5800936--5800998	31	2.0	31	100	0	126	9	15	50	23	1.73
5801658--5801791	30	4.5	30	72	16	100	38	20	2	38	1.66
5801651--5801791	59	2.3	61	84	6	189	36	21	2	39	1.66
5812597--5813172	49	11.8	47	71	11	329	38	21	24	15	1.92
5812597--5813135	98	5.5	97	80	10	435	38	20	24	15	1.92
5812813--5813224	97	4.2	97	82	6	494	38	20	24	16	1.92
5812597--5813074	244	2.0	243	89	2	726	38	20	25	15	1.92
5812647--5813224	146	4.0	147	79	7	640	39	20	24	16	1.92
5813639--5813693	17	3.2	17	81	0	74	40	3	1	54	1.28
5814291--5814366	3	25.0	3	75	7	64	57	2	1	38	1.21
5815390--5815619	29	7.9	28	70	16	137	33	25	2	38	1.68
5815367--5815622	58	4.4	58	84	4	257	34	25	2	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5815438--5815622	29	6.3	29	74	15	159	36	25	1	36	1.63
5821891--5821915	12	2.1	12	100	0	50	44	32	0	24	1.54
5837349--5837373	2	12.5	2	100	0	50	52	0	48	0	1.00
5837617--5837677	19	3.4	18	82	8	72	32	3	6	57	1.41
5837617--5837677	17	3.4	17	80	8	68	32	3	6	57	1.41
5837641--5837699	23	2.6	22	83	5	64	42	1	5	50	1.34
5838783--5838832	17	2.9	16	82	8	55	70	0	24	6	1.10
5839528--5839644	30	3.9	30	86	1	155	41	17	1	38	1.60
5839528--5839665	30	4.6	30	83	4	154	42	18	1	36	1.60
5839528--5839654	59	2.1	62	88	4	188	41	19	1	37	1.61
5839687--5839850	60	2.8	59	88	1	240	34	29	3	33	1.73
5839676--5839824	30	5.0	29	65	18	83	32	31	3	32	1.74
5841603--5841650	25	2.0	24	83	4	60	16	31	14	37	1.89
5846967--5847083	60	1.9	59	81	6	137	43	5	23	27	1.77
5846994--5847083	31	3.0	31	80	11	114	43	6	23	26	1.78
5847009--5847097	30	3.0	29	80	12	101	42	5	23	28	1.76
5859939--5860033	21	4.8	21	70	19	69	58	2	3	35	1.25
5859929--5860045	9	12.3	9	67	17	51	58	1	2	37	1.22
5861871--5861909	2	20.0	2	89	5	62	0	51	0	48	1.00
5865173--5865197	3	8.3	3	100	0	50	64	36	0	0	0.94
5868672--5868697	13	2.0	13	100	0	52	38	7	23	30	1.83
5869311--5869349	13	2.9	13	88	3	51	51	2	2	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5872914--5872953	16	2.5	17	80	19	50	35	5	0	60	1.19
5873856--5873883	2	14.0	2	100	0	56	50	0	0	50	1.00
5874800--5874832	2	16.5	2	100	0	66	48	0	51	0	1.00
5892356--5892380	12	2.1	12	100	0	50	92	0	8	0	0.40
5897745--5898118	59	6.4	59	88	2	533	35	3	28	32	1.73
5897746--5898117	177	2.1	176	90	2	588	35	3	28	32	1.73
5898247--5898584	161	2.1	162	88	1	491	43	12	17	26	1.85
5899146--5899176	14	2.3	14	94	5	55	22	9	0	67	1.19
5899319--5899356	15	2.5	15	91	0	58	28	7	2	60	1.38
5899323--5899378	24	2.3	24	87	6	78	32	7	5	55	1.50
5900040--5900130	6	15.0	6	75	11	78	49	2	1	47	1.21
5900067--5900139	17	4.6	16	81	11	87	58	1	1	38	1.15
5900103--5900158	28	2.0	27	82	3	67	55	5	1	37	1.33
5900561--5901128	69	7.9	72	86	6	624	29	20	17	33	1.95
5900435--5901125	145	4.8	144	84	6	777	29	20	16	33	1.95
5900899--5901010	32	3.3	32	68	16	100	23	22	16	37	1.94
5912803--5913080	29	9.6	27	74	18	172	37	3	26	33	1.73
5912835--5913080	57	4.3	57	90	2	377	37	3	26	33	1.73
5912853--5913085	59	4.1	54	86	10	295	38	3	26	31	1.74
5913212--5913534	161	2.0	162	89	1	497	43	12	17	26	1.84
5914119--5914151	14	2.4	14	95	5	59	21	12	0	66	1.23
5914211--5914257	19	2.5	19	96	0	85	8	36	42	12	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5914311--5914348	15	2.5	15	91	0	58	28	7	2	60	1.38
5914315--5914370	24	2.3	24	87	6	78	32	7	5	55	1.50
5915068--5915131	6	10.7	6	77	12	69	56	1	1	40	1.18
5915068--5915140	17	4.6	16	81	11	87	58	1	1	38	1.15
5915104--5915159	28	2.0	27	82	3	67	55	5	1	37	1.33
5918939--5918964	2	13.0	2	100	0	52	50	0	0	50	1.00
5927367--5927487	31	4.0	30	70	18	88	24	13	10	51	1.72
5939231--5939390	79	2.0	80	98	1	313	27	11	23	38	1.89
5941197--5941247	25	2.1	23	89	7	75	47	3	5	43	1.46
5946147--5946183	13	2.6	15	83	8	51	29	21	2	45	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126