genome.fa.s1.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  22  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7194737--7194801	13	5.1	13	70	10	62	36	23	6	33	1.80
7196681--7196713	4	8.2	4	100	0	66	75	24	0	0	0.80
7206668--7206747	14	5.7	14	74	0	70	25	21	25	28	1.99
7209436--7209469	16	2.1	16	89	10	52	58	0	0	41	0.98
7209941--7210052	56	2.0	56	100	0	224	23	5	14	57	1.58
7210585--7210628	17	2.6	17	85	7	54	52	0	2	45	1.13
7210662--7210738	17	4.7	17	71	20	65	57	1	2	38	1.21
7210691--7210755	11	5.5	11	70	22	51	55	1	3	40	1.25
7210658--7210755	48	2.0	49	90	2	153	57	2	3	37	1.26
7214193--7214303	56	2.0	55	98	1	213	23	5	14	56	1.58
7214495--7214538	21	2.0	21	86	8	61	63	2	0	34	1.07
7214504--7214538	14	2.4	15	95	4	63	62	0	0	37	0.95
7226525--7226573	23	2.2	23	82	17	59	53	0	0	46	1.00
7226525--7226566	22	2.0	22	85	4	59	50	0	0	50	1.00
7227738--7227788	26	2.0	26	84	7	68	56	5	7	29	1.51
7229250--7229296	18	2.6	18	83	6	60	31	23	27	17	1.96
7229470--7229494	11	2.3	11	100	0	50	28	0	8	64	1.22
7231453--7231498	17	2.7	17	100	0	92	23	15	0	60	1.34
7233793--7233834	17	2.4	17	88	4	57	47	2	28	21	1.63
7235264--7235493	29	7.9	29	71	8	92	33	4	25	36	1.76
7235262--7235511	59	4.3	59	79	6	242	33	4	24	37	1.76
7235352--7235510	29	5.5	28	72	8	97	33	3	24	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7236557--7236587	12	2.6	12	94	0	53	41	0	0	58	0.98
7240424--7240633	23	9.3	23	73	16	145	42	21	23	11	1.86
7240478--7240552	39	1.9	39	91	0	123	44	21	22	12	1.85
7240517--7240633	48	2.5	46	86	8	164	41	23	23	11	1.87
7246861--7247070	23	9.3	23	73	16	145	42	21	23	11	1.86
7246915--7246989	39	1.9	39	91	0	123	44	21	22	12	1.85
7246954--7247070	48	2.5	46	86	8	164	41	23	23	11	1.87
7254796--7254839	23	1.9	23	86	9	63	36	11	18	34	1.86
7255114--7255152	15	2.4	16	87	8	53	35	0	0	64	0.94
7256685--7256712	3	9.3	3	100	0	56	67	0	0	32	0.91
7264337--7264412	32	2.3	32	82	6	91	26	5	5	63	1.37
7266376--7266415	17	2.4	16	88	12	55	5	12	0	82	0.82
7266376--7266409	15	2.2	16	89	5	52	5	11	0	82	0.83
7266387--7266420	17	2.1	17	88	5	52	5	14	0	79	0.91
7268978--7269214	23	10.5	23	75	13	163	41	21	25	11	1.86
7269082--7269214	71	1.9	69	87	6	196	38	22	27	12	1.89
7271295--7271360	16	4.4	16	68	26	54	51	1	3	43	1.26
7271368--7271465	48	2.0	49	88	2	144	57	3	3	36	1.30
7278117--7278150	16	2.1	16	89	10	52	58	0	0	41	0.98
7286703--7286744	22	1.9	22	85	9	59	19	4	0	76	0.96
7295205--7295416	53	3.9	54	79	8	207	30	18	17	33	1.95
7295285--7295498	59	3.8	56	80	13	208	28	16	16	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7307469--7307533	26	2.5	26	100	0	130	41	24	13	20	1.88
7308899--7308930	16	1.9	17	93	6	57	50	3	0	46	1.17
7311117--7311146	12	2.5	12	94	0	51	86	0	13	0	0.57
7314178--7314220	21	2.0	21	81	0	50	13	23	16	46	1.83
7331573--7331637	31	2.1	30	82	2	76	30	6	15	47	1.70
7346441--7346479	16	2.4	17	87	12	55	41	0	2	56	1.13
7350695--7350746	25	2.1	25	100	0	104	38	23	3	34	1.73
7351656--7351706	24	2.1	23	86	13	68	60	0	0	39	0.97
7360884--7360908	12	2.1	12	100	0	50	40	0	40	20	1.52
7362218--7362270	8	6.2	8	76	10	52	75	1	0	22	0.90
7362494--7362580	34	2.5	34	80	10	97	33	3	4	58	1.35
7362506--7362580	35	2.1	35	85	4	98	32	4	5	58	1.39
7362571--7362623	28	1.9	27	84	3	70	24	0	0	75	0.80
7362577--7362623	19	2.3	22	86	13	66	23	0	0	76	0.78
7369836--7369884	24	2.0	24	84	4	62	10	2	20	67	1.30
7370657--7370733	28	2.6	30	80	10	88	54	1	0	44	1.08
7372099--7372138	16	2.5	16	84	8	55	45	7	0	47	1.31
7374075--7374131	23	2.5	24	80	13	66	36	0	0	63	0.95
7376101--7376997	446	2.0	448	99	0	1780	44	8	6	40	1.62
7385090--7385115	2	13.0	2	100	0	52	50	0	0	50	1.00
7386140--7386188	18	2.7	18	81	9	55	55	8	4	32	1.48
7387985--7388016	2	16.0	2	100	0	64	50	50	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7398821--7398863	19	2.2	20	83	4	61	41	2	13	41	1.57
7399063--7399104	22	1.9	22	85	0	57	35	0	4	59	1.19
7402477--7402509	15	2.2	15	94	0	57	60	24	12	3	1.46
7402676--7402776	24	4.2	24	85	2	123	54	4	9	30	1.55
7402664--7402776	48	2.4	48	79	5	129	52	6	10	30	1.61
7409900--7409974	29	2.7	26	72	22	62	44	0	4	52	1.20
7409897--7409938	19	2.2	19	87	8	59	50	0	2	47	1.14
7409908--7409974	29	2.3	28	85	10	82	44	0	2	52	1.16
7409918--7410045	31	4.1	32	74	10	81	44	1	3	50	1.30
7413469--7413799	174	1.9	171	82	5	407	32	15	29	22	1.95
7425412--7425450	19	2.1	19	85	0	51	46	5	5	43	1.48
7442077--7442153	38	2.0	38	100	0	154	36	5	12	45	1.65
7445411--7445457	23	2.0	23	84	8	60	51	4	0	44	1.21
7456014--7456061	12	4.0	12	77	0	51	29	2	54	14	1.52
7469487--7469536	2	25.0	2	91	0	82	54	0	46	0	1.00
7469952--7470280	143	2.3	143	93	0	552	41	9	15	32	1.80
7485332--7485373	18	2.4	19	80	15	54	45	2	2	50	1.27
7498599--7498649	10	5.0	10	83	4	66	56	0	0	43	0.99
7498599--7498656	20	2.9	21	84	5	75	60	0	0	39	0.97
7498991--7499049	28	2.1	27	81	12	66	38	1	3	55	1.26
7499080--7499124	20	2.2	21	88	4	65	53	15	4	26	1.61
7499738--7499806	31	2.2	32	84	7	88	27	15	7	49	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7500049--7500157	58	1.9	58	88	5	168	47	11	16	23	1.80
7500981--7501037	29	2.0	28	86	10	80	24	3	7	64	1.34
7504056--7504085	15	2.0	15	93	0	51	23	0	0	76	0.78
7504358--7504413	10	5.5	10	73	12	51	51	0	0	48	1.00
7504355--7504424	20	3.4	20	76	5	68	51	0	0	48	1.00
7504599--7504682	25	3.3	25	73	17	75	47	1	0	51	1.08
7505979--7506023	22	2.1	22	84	12	58	44	4	2	48	1.35
7509433--7509595	53	3.0	53	75	7	175	33	16	21	28	1.95
7509452--7509743	54	5.3	51	70	20	178	36	16	19	27	1.93
7509602--7509767	57	2.9	58	79	12	189	39	15	15	28	1.88
7509602--7509767	59	2.9	58	80	12	189	39	15	15	28	1.88
7509452--7509758	55	5.5	56	73	13	240	35	16	18	29	1.93
7511763--7511817	2	27.5	2	100	0	110	50	0	0	49	1.00
7513025--7513098	30	2.5	30	81	0	76	45	2	4	47	1.35
7513485--7513635	58	2.6	59	85	6	209	53	1	0	43	1.16
7513604--7513654	24	2.1	24	82	10	59	60	0	1	37	1.08
7513474--7513644	58	3.0	55	79	14	177	53	1	1	43	1.18
7519457--7519626	58	2.9	60	86	2	247	45	11	18	24	1.83
7520698--7520740	20	2.2	20	83	8	52	44	13	6	34	1.72
7522507--7522876	30	12.5	30	78	8	305	34	3	24	37	1.72
7522477--7522874	89	4.5	88	76	7	301	34	3	24	36	1.74
7522517--7522884	59	6.2	60	77	8	317	33	3	24	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7524651--7524718	6	12.0	6	70	17	56	50	2	0	47	1.16
7524653--7524716	17	3.8	17	80	10	78	50	3	0	46	1.17
7524653--7524729	17	4.5	17	81	1	73	53	2	0	44	1.14
7540008--7540048	2	20.5	2	100	0	82	51	0	0	48	1.00
7548165--7548206	17	2.4	17	88	4	57	26	7	11	54	1.62
7555547--7555599	28	2.0	26	82	14	63	39	1	1	56	1.21
7556534--7556572	21	1.9	20	89	5	60	25	10	7	56	1.59
7559043--7559162	58	2.1	58	87	9	174	34	0	18	47	1.49
7559382--7559427	23	2.0	23	82	0	56	34	19	10	34	1.87
7563910--7563943	6	5.7	6	89	0	50	35	0	17	47	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126