genome.fa.s1.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  61  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17826925--17826963	15	2.6	15	84	8	53	53	5	0	41	1.23
17828068--17828169	41	2.5	41	95	1	177	36	10	25	27	1.89
17828204--17828293	40	2.2	40	88	3	128	42	10	24	23	1.84
17828198--17828326	40	3.2	41	80	11	126	44	7	24	23	1.79
17828956--17829012	22	2.6	22	77	2	62	29	14	24	31	1.94
17835190--17835290	41	2.4	41	83	4	132	42	10	19	26	1.84
17835320--17835414	40	2.4	40	84	3	131	41	9	26	23	1.84
17839095--17839183	26	3.4	25	71	10	81	43	2	2	51	1.26
17839796--17839956	51	3.2	51	86	3	218	42	18	13	26	1.87
17841754--17841793	17	2.3	18	95	4	73	60	0	35	5	1.19
17841754--17841803	15	3.2	15	88	5	64	64	0	32	4	1.12
17842746--17842801	15	3.6	15	71	17	51	32	7	5	55	1.50
17842754--17842823	32	2.2	32	94	2	124	32	10	2	54	1.48
17844808--17844834	13	2.1	13	100	0	54	22	7	48	22	1.75
17848005--17848044	17	2.3	18	83	12	57	10	7	25	57	1.57
17852184--17852242	24	2.5	24	81	10	59	37	5	0	57	1.21
17852210--17852376	58	2.9	57	80	12	182	44	2	1	50	1.25
17852846--17852894	18	2.6	19	83	6	64	36	2	2	59	1.21
17852839--17852888	25	2.0	26	84	11	68	36	0	2	62	1.07
17853229--17853300	16	4.5	16	78	0	81	41	1	25	31	1.64
17853506--17853619	16	7.8	16	65	20	61	45	0	0	52	1.12
17854584--17854649	21	3.2	21	64	23	59	48	10	12	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17854570--17854672	40	2.5	39	87	4	143	45	10	10	33	1.73
17857075--17857115	21	2.0	21	90	0	64	56	7	21	14	1.63
17865412--17866730	659	2.0	659	97	0	2516	27	15	24	32	1.95
17873112--17873197	30	2.9	29	76	6	91	19	27	22	30	1.98
17879804--17879845	22	1.9	22	90	0	66	23	40	19	16	1.91
17881453--17881540	19	4.8	19	80	8	103	35	3	23	37	1.72
17881480--17881530	17	2.9	17	88	5	66	35	0	25	39	1.56
17881608--17881729	19	6.5	19	87	1	165	36	4	24	34	1.75
17887297--17887383	23	3.9	22	77	4	84	36	14	14	33	1.88
17897549--17897587	16	2.4	16	95	0	69	28	5	15	51	1.64
17899168--17899254	22	3.9	22	75	4	84	35	14	14	34	1.88
17899180--17899254	23	3.3	22	75	5	69	34	16	12	37	1.85
17899424--17899593	92	1.8	92	89	2	270	41	15	3	39	1.65
17903213--17903253	18	2.3	18	87	8	57	56	7	9	26	1.58
17905274--17905308	18	1.9	18	88	0	52	34	0	25	40	1.56
17909098--17909130	17	1.9	17	88	11	50	30	0	6	63	1.18
17911426--17911465	17	2.4	17	87	8	55	72	0	7	20	1.08
17917285--17917362	31	2.5	31	91	0	129	21	16	19	42	1.89
17917569--17917609	20	2.0	20	85	9	55	53	2	0	43	1.13
17918424--17918462	19	2.0	20	90	5	62	53	2	0	43	1.14
17918434--17918478	19	2.4	19	85	7	56	51	11	0	37	1.38
17920633--17920891	59	4.4	59	84	4	274	35	3	24	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17920660--17920892	29	7.9	29	78	9	222	35	3	25	36	1.71
17920635--17920892	58	4.4	58	83	4	261	35	3	24	36	1.71
17921904--17921954	24	2.1	25	85	3	68	49	1	0	49	1.12
17924341--17924385	21	2.2	21	92	7	76	44	24	15	15	1.85
17926187--17926219	15	2.3	15	89	5	50	42	0	0	57	0.98
17926907--17926977	35	2.0	36	81	13	85	23	4	11	60	1.48
17929829--17930033	103	2.0	103	96	0	374	26	15	28	30	1.96
17932972--17933024	21	2.5	21	77	14	63	52	26	0	20	1.46
17933074--17933149	23	3.3	23	74	1	64	25	47	14	13	1.80
17938852--17938879	12	2.3	12	100	0	56	39	7	0	53	1.28
17941362--17941536	89	2.0	90	84	7	232	37	17	8	36	1.81
17941636--17941820	90	2.1	89	84	7	250	33	8	20	37	1.83
17942942--17943019	38	2.0	40	90	5	124	46	11	15	26	1.80
17942990--17943208	88	2.5	90	81	8	268	39	19	10	30	1.86
17943276--17943446	10	18.0	10	66	13	60	61	0	4	33	1.21
17943370--17943413	21	2.1	21	83	8	54	56	0	9	34	1.31
17943613--17943676	9	6.8	9	77	15	67	25	0	0	75	0.81
17943620--17943662	14	3.1	13	75	18	50	27	0	0	72	0.85
17943673--17943731	24	2.5	23	86	2	82	38	0	0	61	0.96
17943689--17943747	31	1.9	31	89	0	91	37	1	0	61	1.07
17943771--17943992	91	2.5	89	82	6	252	27	8	24	39	1.84
17944503--17944751	90	2.7	89	81	6	259	34	9	18	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17947164--17947356	52	3.7	52	87	0	251	26	16	24	32	1.96
17961915--17961991	34	2.3	34	97	0	145	44	16	5	33	1.70
17963003--17963319	159	2.0	159	90	2	503	42	7	17	31	1.77
17963576--17963665	46	2.0	46	95	0	162	40	13	17	28	1.88
17975626--17975650	13	1.9	13	100	0	50	24	0	0	76	0.80
17976494--17976531	17	2.3	17	86	13	53	50	0	2	47	1.15
17978783--17978869	26	3.3	26	91	0	147	31	1	9	58	1.37
17978887--17978925	14	2.8	14	92	0	60	20	0	30	48	1.50
17981851--17981906	27	2.1	27	83	6	69	17	32	26	23	1.97
17983478--17983516	2	20.5	2	89	10	64	48	0	0	51	1.00
17991669--17991723	24	2.3	24	84	3	76	25	9	9	56	1.60
17995814--17995910	51	1.9	51	93	0	167	29	22	18	28	1.97
18002021--18002076	24	2.4	24	81	3	69	25	10	7	57	1.58
18002021--18002074	23	2.3	23	83	6	63	24	11	7	57	1.58
18018962--18018995	3	11.7	3	87	6	52	29	2	0	67	1.05
18022705--18022742	18	2.1	18	90	9	60	55	0	31	13	1.38
18033261--18033313	19	2.7	19	82	11	63	67	7	24	0	1.16
18033270--18033310	18	2.2	19	86	4	57	70	7	21	0	1.11
18033410--18033451	18	2.4	18	88	4	59	16	11	11	59	1.61
18034036--18034072	18	2.1	17	90	5	56	72	2	24	0	0.97
18036291--18036604	158	2.0	158	87	0	457	23	22	23	30	1.99
18041577--18041619	21	2.0	22	95	4	79	76	4	4	13	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18053264--18053706	221	2.0	220	98	0	850	31	10	21	36	1.88
18053953--18053994	21	2.0	21	95	0	75	30	4	33	30	1.78
18054807--18054850	23	2.0	22	90	4	70	36	0	15	47	1.46
18059571--18059946	23	16.3	23	86	0	509	33	6	14	45	1.70
18059972--18059997	13	2.0	13	100	0	52	38	7	23	30	1.83
18061341--18061380	21	1.9	21	85	10	55	60	2	0	37	1.11
18061829--18061885	27	2.1	27	83	0	69	28	22	28	21	1.99
18064420--18064444	12	2.1	12	100	0	50	36	8	16	40	1.77
18067001--18067073	21	3.5	21	76	0	83	43	27	10	17	1.83
18066992--18067073	42	2.0	42	85	0	110	41	26	10	20	1.86
18074904--18074951	19	2.5	20	75	21	50	45	0	0	54	0.99
18079214--18079238	12	2.1	12	100	0	50	36	8	16	40	1.77
18084277--18084505	101	2.3	101	89	0	341	27	26	19	26	1.99
18084736--18084931	88	2.2	89	89	2	306	25	26	14	34	1.94
18086018--18086163	57	2.6	57	80	7	154	31	13	17	38	1.87
18086097--18086390	116	2.6	112	79	7	272	32	12	19	34	1.90
18086154--18086390	116	2.1	114	83	6	293	33	13	20	32	1.91
18087762--18087806	18	2.5	19	82	7	58	48	8	6	35	1.61
18087937--18087985	22	2.2	22	82	10	55	36	2	4	57	1.30
18088585--18088744	58	2.8	58	86	2	205	27	24	17	30	1.97
18095264--18095847	294	2.0	296	91	2	960	34	19	17	28	1.95
18099024--18099061	18	2.1	18	90	0	58	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18105810--18105873	25	2.6	25	89	0	101	50	1	7	40	1.41
18106063--18106105	23	1.9	22	85	4	59	74	2	0	23	0.93
18106072--18106104	14	2.4	14	94	0	57	78	3	0	18	0.87
18106354--18106397	19	2.3	19	84	11	54	61	0	0	38	0.96
18106792--18106834	20	2.2	20	87	8	61	16	32	25	25	1.96
18107804--18107856	17	3.0	17	73	10	61	24	3	3	67	1.23
18108507--18108533	12	2.2	12	100	0	54	25	37	37	0	1.57
18108977--18109025	19	2.4	21	77	19	59	36	4	0	59	1.17
18111488--18112153	52	12.6	52	84	7	824	26	14	24	35	1.93
18111932--18112056	63	2.0	63	91	0	205	28	14	20	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126