genome.fa.s1.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  60  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17650923--17650999	40	1.9	40	83	0	100	22	16	12	48	1.80
17650894--17651152	69	3.9	69	79	14	271	20	16	11	50	1.77
17650993--17651076	39	2.1	40	86	6	118	15	17	14	52	1.75
17651033--17651163	29	4.6	29	85	2	158	19	16	12	52	1.74
17651034--17651162	57	2.3	56	83	4	159	19	16	11	52	1.73
17651393--17651448	29	1.9	29	92	0	94	37	1	16	44	1.58
17651347--17651498	74	2.1	74	84	2	198	35	7	16	40	1.76
17651422--17651543	45	2.7	45	85	0	154	34	5	17	42	1.73
17651511--17651567	29	2.0	29	92	0	96	36	1	15	45	1.57
17651467--17651909	74	6.0	74	72	13	344	34	6	16	42	1.73
17651342--17651617	119	2.3	119	92	0	462	35	7	16	40	1.76
17651584--17651654	37	1.9	37	91	0	115	32	9	19	38	1.85
17651618--17651835	45	4.8	45	86	1	310	34	5	16	42	1.73
17651614--17651835	90	2.5	91	91	1	358	34	5	17	42	1.73
17651833--17652082	45	5.6	45	84	2	281	36	5	14	43	1.69
17651713--17652327	119	5.0	120	81	8	587	35	5	15	43	1.70
17651832--17652082	90	2.8	89	82	2	313	36	5	14	43	1.69
17652014--17652156	74	1.9	74	94	0	250	35	5	15	43	1.70
17652090--17652208	45	2.6	45	88	2	159	36	7	15	41	1.75
17652132--17652282	74	2.0	74	87	2	214	35	5	17	42	1.72
17652189--17652377	90	2.1	90	92	3	317	34	4	15	45	1.65
17652206--17652380	45	3.9	45	90	0	269	34	4	16	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17652567--17652637	36	2.0	36	85	0	97	36	5	15	42	1.71
17653510--17653546	12	3.1	13	88	11	53	13	32	0	54	1.40
17657830--17657876	21	2.2	21	84	3	58	80	0	8	10	0.89
17657830--17657876	22	2.0	22	88	8	67	80	0	8	10	0.89
17660703--17660978	142	2.0	141	87	5	407	44	7	3	44	1.49
17660919--17661093	50	3.5	48	70	17	142	41	9	4	45	1.54
17660886--17661085	100	2.0	101	93	4	343	44	9	4	42	1.56
17662237--17662321	28	3.0	28	68	21	86	40	7	1	51	1.37
17662462--17662508	17	2.6	17	87	12	60	29	0	0	70	0.88
17662723--17662783	25	2.5	25	97	2	115	44	4	3	47	1.41
17668785--17668835	24	2.1	24	85	10	68	39	0	1	58	1.09
17668780--17668846	26	2.7	24	79	11	64	37	0	1	61	1.05
17671272--17671296	13	1.9	13	100	0	50	44	0	16	40	1.47
17675635--17675665	15	2.1	15	93	0	53	22	3	19	54	1.58
17675811--17675842	14	2.3	14	94	0	55	50	0	0	50	1.00
17675916--17676145	110	2.1	108	92	5	347	30	18	8	43	1.79
17684680--17684783	36	2.9	36	86	0	154	33	23	15	27	1.95
17684862--17685127	23	11.6	23	87	0	379	47	13	4	34	1.64
17686539--17686779	53	4.5	53	78	4	220	30	14	21	34	1.92
17686535--17686779	106	2.3	105	80	4	287	31	13	21	33	1.92
17698589--17698831	53	4.6	53	86	2	310	29	14	20	35	1.93
17698587--17698831	106	2.3	106	85	4	343	29	14	20	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17701404--17701462	29	2.0	29	96	0	109	35	27	8	28	1.86
17705274--17705308	16	2.1	17	89	10	54	48	14	0	37	1.44
17705721--17706480	380	2.0	379	87	1	1101	36	23	10	30	1.89
17706614--17706708	23	4.1	23	86	0	109	45	13	2	38	1.56
17706614--17706917	46	6.8	46	82	6	327	46	13	4	35	1.63
17706614--17706917	69	4.5	69	80	6	327	46	13	4	35	1.63
17706698--17706727	15	2.0	15	100	0	60	33	6	13	46	1.69
17706713--17706917	23	8.9	23	84	0	248	47	13	4	34	1.62
17709032--17709130	18	5.5	18	83	4	128	21	22	24	32	1.98
17711571--17711610	19	2.1	19	86	9	55	22	27	22	27	1.99
17713888--17713940	18	2.9	17	75	8	52	16	5	5	71	1.25
17716453--17716517	14	4.7	14	69	16	55	47	1	0	50	1.10
17717627--17717712	42	2.0	42	100	0	172	30	18	4	46	1.69
17720617--17720729	58	1.9	58	85	0	154	42	17	5	34	1.72
17720699--17720777	25	3.2	25	69	18	67	40	18	3	36	1.69
17722334--17722430	10	8.7	10	70	17	59	40	19	3	37	1.68
17722334--17722449	59	2.0	59	94	3	207	39	18	3	37	1.68
17722452--17722507	23	2.4	23	87	0	76	44	16	3	35	1.65
17725856--17725906	23	2.2	23	86	6	68	45	17	3	33	1.67
17726314--17726441	36	3.6	35	80	3	150	38	21	10	29	1.87
17726311--17726457	70	2.1	72	88	2	217	37	21	9	31	1.86
17733126--17733178	28	2.0	26	88	7	79	45	11	7	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17735741--17735784	18	2.4	18	80	0	52	50	18	2	29	1.59
17736018--17736082	24	2.6	26	72	18	66	46	18	1	33	1.59
17737427--17737471	16	2.8	17	76	10	58	35	0	0	64	0.94
17739873--17739917	20	2.2	20	84	7	56	48	2	15	33	1.57
17741739--17741792	21	2.6	20	85	11	65	29	11	29	29	1.91
17741756--17741811	21	2.7	21	80	0	58	25	17	25	32	1.97
17745410--17745499	44	2.0	44	83	10	112	45	0	0	54	0.99
17746207--17746251	6	7.7	6	80	5	56	37	0	60	2	1.09
17746307--17746362	11	5.1	11	79	16	53	48	1	0	50	1.11
17746320--17746345	13	2.0	13	100	0	52	61	0	0	38	0.96
17750717--17750759	17	2.5	17	84	0	50	16	9	16	58	1.63
17750728--17750786	17	3.5	16	77	13	57	16	8	16	57	1.63
17755504--17755642	56	2.5	55	80	1	161	25	19	25	28	1.99
17760738--17760787	3	16.0	3	87	8	73	66	2	2	30	1.14
17760738--17760786	10	5.1	10	90	2	66	67	2	2	28	1.13
17760738--17760787	13	4.0	12	89	7	73	66	2	2	30	1.14
17766623--17766648	12	2.2	12	100	0	52	42	15	7	34	1.75
17768120--17768149	6	4.8	6	95	4	51	3	13	0	83	0.77
17769459--17769523	3	21.7	3	96	0	121	0	35	0	64	0.94
17771315--17771347	17	1.9	17	93	0	57	24	6	15	54	1.63
17771764--17771811	16	2.9	17	81	6	55	60	4	0	35	1.16
17771895--17771947	24	2.2	25	96	3	99	37	7	3	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17781737--17782260	122	4.3	122	86	1	633	23	22	15	38	1.93
17783903--17783933	15	2.1	15	93	0	53	48	6	3	41	1.45
17784177--17784204	13	2.2	13	100	0	56	39	17	7	35	1.78
17787282--17787314	17	1.9	17	93	0	57	33	6	21	39	1.78
17787292--17787341	23	2.2	22	83	13	66	32	4	16	48	1.64
17790784--17790851	31	2.1	33	84	15	90	41	5	4	48	1.47
17796686--17796823	66	2.1	66	79	2	143	14	22	18	44	1.86
17803267--17803307	20	2.1	20	90	4	66	51	26	7	14	1.69
17805011--17805065	17	2.9	19	78	13	69	61	10	0	27	1.29
17805193--17805241	20	2.5	20	86	6	64	65	24	6	4	1.33
17805194--17805258	23	3.0	23	80	6	64	66	21	7	4	1.36
17805244--17805310	25	2.6	26	83	7	91	67	17	7	7	1.39
17805214--17805321	37	2.9	37	81	4	110	67	16	7	8	1.39
17805314--17805391	18	4.4	18	78	13	74	69	16	5	8	1.33
17805331--17805392	19	3.3	18	81	2	61	69	17	6	6	1.32
17806043--17806262	41	5.3	40	80	1	233	34	17	25	22	1.96
17806003--17806282	82	3.4	80	79	5	276	35	16	25	22	1.95
17806567--17806650	31	2.8	30	75	12	82	44	13	9	33	1.76
17807920--17807962	21	2.0	21	100	0	86	46	9	4	39	1.57
17808201--17808305	47	2.2	47	89	0	156	31	29	0	39	1.57
17808551--17808578	14	2.0	14	100	0	56	14	7	35	42	1.73
17812023--17812077	28	2.0	28	100	0	110	54	1	0	43	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17813060--17813089	13	2.2	14	94	5	53	36	0	10	53	1.35
17814134--17814293	42	3.9	40	73	14	119	19	23	13	43	1.86
17814158--17814435	79	3.5	76	75	10	236	19	21	16	42	1.89
17814346--17814457	40	2.8	40	78	9	113	18	21	18	41	1.91
17814346--17814457	39	2.8	40	76	11	106	18	21	18	41	1.91
17818285--17818323	20	2.0	20	90	5	62	51	2	0	46	1.14
17818326--17818363	19	2.0	20	85	15	53	36	2	2	57	1.26
17821466--17821546	27	3.0	27	74	11	69	61	4	1	32	1.25
17821845--17821909	29	2.2	30	88	2	96	47	12	9	30	1.72
17826703--17826737	14	2.6	13	86	8	52	25	5	0	68	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126