genome.fa.s1.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  59  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17354448--17354516	29	2.4	29	90	2	104	24	37	20	17	1.93
17354698--17354935	116	2.1	115	96	0	440	32	32	15	19	1.93
17356914--17356973	30	2.0	30	96	0	111	28	16	28	26	1.97
17361468--17361545	6	13.0	6	78	18	83	47	1	0	51	1.09
17361468--17361530	17	3.6	17	87	10	83	42	1	0	55	1.09
17361458--17361537	11	7.5	11	72	16	60	45	1	1	52	1.16
17363443--17363534	28	3.1	30	81	10	102	40	27	5	27	1.78
17363443--17363534	31	3.1	29	80	13	91	40	27	5	27	1.78
17363528--17363618	30	3.1	30	68	24	84	29	30	6	32	1.83
17363501--17363616	59	2.0	59	87	3	171	31	30	6	31	1.82
17365075--17365141	34	2.0	34	84	0	89	47	35	1	14	1.54
17365208--17365246	19	2.0	21	90	10	64	41	33	5	20	1.74
17365361--17365424	26	2.6	23	79	16	65	62	1	6	29	1.29
17366738--17367091	30	11.9	30	80	5	378	39	2	23	34	1.68
17366673--17367115	89	5.0	85	79	9	356	39	3	22	34	1.71
17366746--17367105	119	3.0	116	81	8	413	39	2	22	35	1.69
17379889--17380214	29	11.2	28	71	14	141	33	3	26	35	1.75
17379959--17380132	29	5.9	30	79	4	167	32	4	25	36	1.77
17379959--17380131	59	2.9	58	77	5	150	32	4	26	36	1.77
17380111--17380214	31	3.5	29	81	6	102	36	3	27	31	1.75
17379935--17380214	29	9.5	29	72	14	146	34	4	26	34	1.76
17380895--17380935	3	13.7	3	100	0	82	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17382375--17382860	50	9.8	50	69	13	252	16	31	16	35	1.91
17382325--17382643	99	3.2	97	78	7	347	15	31	16	35	1.91
17382326--17382643	50	6.4	48	70	10	162	15	31	16	35	1.91
17382418--17382762	148	2.3	148	83	4	421	16	32	16	34	1.91
17382599--17382866	98	2.7	96	81	8	317	15	30	18	35	1.92
17390576--17391023	209	2.1	207	90	1	689	36	15	23	24	1.93
17391393--17391430	17	2.2	17	90	0	58	50	0	0	50	1.00
17392226--17392268	22	2.0	21	86	4	59	60	0	9	30	1.28
17392314--17392572	30	8.8	29	80	9	240	35	27	1	35	1.65
17392314--17392572	59	4.4	60	78	10	250	35	27	1	35	1.65
17392314--17392581	29	9.1	29	80	9	242	34	27	1	36	1.65
17393442--17393582	30	4.7	29	86	4	192	40	2	21	36	1.65
17393447--17393582	60	2.3	60	92	0	218	40	2	22	35	1.66
17393444--17393612	60	2.8	59	81	3	203	39	2	22	35	1.69
17393444--17393626	90	2.0	90	80	2	206	39	3	21	35	1.72
17394857--17394893	11	3.4	11	88	0	56	21	27	32	18	1.97
17395674--17395761	44	2.0	44	90	0	140	21	34	12	31	1.91
17395575--17395923	142	2.4	144	87	3	479	21	30	14	33	1.93
17395501--17395924	49	8.8	49	77	6	382	21	29	15	34	1.94
17396949--17397025	30	2.6	30	83	2	93	36	5	24	33	1.78
17398679--17399508	208	4.0	208	84	2	1038	23	20	16	39	1.92
17399010--17399170	85	1.9	85	81	0	196	22	22	14	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17399217--17399372	85	1.8	85	87	2	233	25	22	14	38	1.91
17399302--17399626	121	2.7	123	85	2	440	23	21	16	39	1.92
17399593--17399673	37	2.2	37	90	0	126	27	22	17	33	1.96
17399478--17399823	159	2.2	158	87	1	487	24	21	17	36	1.94
17399705--17399870	85	2.0	85	80	2	190	25	21	14	38	1.91
17399632--17400374	208	3.6	207	90	0	1103	22	22	17	37	1.93
17399912--17400078	85	2.0	85	89	0	253	22	24	17	35	1.95
17408504--17408575	30	2.4	30	88	4	110	40	0	23	36	1.55
17408503--17408646	78	1.8	78	85	5	202	38	2	22	36	1.69
17417909--17417952	23	1.9	23	81	9	54	40	11	25	22	1.87
17426968--17427017	18	2.6	20	75	9	59	48	0	6	46	1.27
17432329--17432363	17	2.0	18	88	5	54	60	8	5	25	1.49
17433421--17433687	29	9.1	28	71	14	166	35	3	23	36	1.72
17433421--17433688	59	4.6	58	81	6	283	36	3	23	36	1.72
17433421--17433669	116	2.1	117	87	5	353	36	3	22	37	1.72
17433685--17433792	30	3.7	29	74	6	101	43	5	23	27	1.76
17433477--17433907	29	14.7	29	69	16	135	38	3	23	34	1.71
17435077--17435114	14	2.8	14	84	4	51	42	0	5	52	1.24
17435076--17435140	20	3.0	20	79	18	69	46	0	3	50	1.17
17435707--17435737	16	1.9	16	93	0	53	12	16	29	41	1.85
17435854--17435931	11	7.0	11	75	8	77	55	2	1	41	1.22
17435854--17435963	17	6.5	17	79	13	93	57	3	0	38	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17435816--17435947	6	22.0	6	71	13	94	53	3	3	40	1.35
17435882--17435935	23	2.4	23	93	3	92	55	0	1	42	1.10
17435892--17435941	23	2.2	23	88	0	73	60	0	2	38	1.09
17435888--17435958	11	6.7	11	75	15	69	59	1	1	38	1.15
17435870--17435958	23	3.9	23	69	24	64	58	2	1	38	1.18
17439266--17439304	18	2.1	19	90	4	62	41	12	10	35	1.77
17451992--17452030	3	13.3	3	84	15	55	66	0	33	0	0.92
17452463--17452507	17	2.6	17	78	0	54	26	17	6	48	1.72
17454792--17454844	22	2.5	22	85	8	67	47	3	15	33	1.63
17456023--17456101	17	4.3	18	73	17	74	54	3	1	40	1.26
17456055--17456109	25	2.2	25	87	6	76	56	3	0	40	1.17
17472908--17473038	37	3.6	37	86	2	194	35	22	12	29	1.91
17473120--17473895	23	33.9	23	84	1	885	46	13	5	33	1.67
17491275--17491440	21	7.9	21	73	5	138	15	28	20	35	1.93
17491275--17491432	63	2.5	63	83	6	194	15	29	19	35	1.93
17491275--17491432	42	3.8	42	81	0	172	15	29	19	35	1.93
17498915--17498943	13	2.3	13	94	5	51	0	24	0	75	0.80
17526102--17526231	47	2.8	47	86	2	172	45	24	13	16	1.83
17531499--17531539	17	2.4	17	91	0	73	17	14	12	56	1.68
17533786--17533832	24	2.0	24	88	12	71	25	14	8	51	1.71
17545211--17545327	61	1.9	61	94	0	207	35	22	19	22	1.96
17557710--17558641	466	2.0	466	94	0	1641	40	15	21	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17573544--17573582	21	1.9	20	84	5	51	17	23	7	51	1.71
17576171--17576213	6	6.8	6	79	10	50	79	0	20	0	0.74
17583276--17583307	14	2.3	15	89	10	50	15	6	12	65	1.44
17585062--17585112	3	17.3	3	80	11	61	68	0	29	1	1.00
17590374--17590427	20	2.7	20	100	0	108	48	9	16	25	1.76
17592468--17592517	22	2.2	23	86	10	68	52	4	6	38	1.45
17594099--17594130	14	2.1	16	88	11	50	37	37	0	25	1.56
17594581--17594619	20	1.9	21	84	5	53	33	38	17	10	1.84
17596884--17596931	18	2.6	19	80	12	55	47	12	0	39	1.41
17598050--17598091	20	2.0	21	81	9	50	38	2	30	28	1.70
17603594--17603619	12	2.2	12	100	0	52	34	7	15	42	1.75
17606602--17606646	22	2.1	21	91	4	72	40	15	8	35	1.79
17612597--17612650	21	2.6	21	78	0	63	31	24	12	31	1.93
17615138--17615169	14	2.3	14	94	0	55	46	15	0	37	1.46
17615189--17615219	14	2.2	14	94	0	53	48	16	0	35	1.46
17618106--17618266	25	6.4	25	82	6	139	32	26	18	22	1.97
17618150--17618265	25	4.6	25	89	0	160	31	27	18	22	1.97
17618106--17618266	75	2.1	75	81	8	177	32	26	18	22	1.97
17618128--17618265	50	2.8	50	86	3	181	31	28	17	22	1.96
17620398--17620436	19	2.1	19	90	0	60	41	7	12	38	1.72
17621034--17621075	19	2.2	20	79	12	52	66	9	7	16	1.42
17621674--17621719	25	1.9	23	86	8	65	32	4	6	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17625628--17625655	12	2.3	12	100	0	56	78	0	7	14	0.95
17625675--17625735	6	10.3	6	87	3	70	18	3	3	75	1.08
17625675--17625736	17	3.5	17	82	6	70	19	3	3	74	1.10
17626640--17626725	11	7.4	12	71	19	67	79	0	15	5	0.92
17626632--17626726	34	2.8	34	81	7	113	77	0	15	6	0.95
17627762--17627806	23	1.9	24	90	4	74	35	2	8	53	1.45
17630320--17630374	24	2.2	26	83	6	69	30	25	14	29	1.95
17630320--17630557	25	9.5	25	80	6	232	34	24	16	23	1.95
17642507--17642544	17	2.2	18	90	4	60	44	5	0	50	1.24
17650800--17650941	29	4.9	29	88	3	214	19	15	13	51	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126