genome.fa.s1.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  55  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16241828--16241874	23	2.0	23	100	0	94	34	29	8	27	1.87
16242405--16242501	27	3.6	27	88	1	140	37	23	17	21	1.94
16246968--16247110	27	5.3	27	78	5	146	38	25	13	22	1.91
16246963--16247112	54	2.8	54	87	4	205	38	26	14	21	1.92
16250996--16251026	16	1.9	16	93	0	53	41	3	0	54	1.16
16256948--16256993	24	1.9	24	86	0	65	28	6	10	54	1.60
16257343--16257372	10	3.1	10	90	9	53	26	0	10	63	1.26
16257362--16257415	13	4.2	13	70	0	54	29	0	11	59	1.32
16259702--16259750	16	2.8	18	80	19	59	53	2	2	42	1.24
16259893--16259957	32	2.0	32	87	0	94	47	7	3	41	1.48
16260522--16260575	27	2.0	27	92	0	90	40	12	3	42	1.61
16275015--16275094	24	3.4	24	73	3	72	68	15	6	10	1.36
16275072--16275208	34	4.1	34	71	18	101	64	19	7	8	1.43
16275137--16275198	11	5.6	11	71	7	54	67	16	8	8	1.39
16275136--16275208	22	3.3	22	79	11	87	65	20	6	6	1.40
16276908--16276959	24	2.2	24	80	16	65	44	13	3	38	1.62
16280944--16280981	11	3.5	11	85	7	51	15	0	2	81	0.80
16280943--16280979	17	2.2	16	90	4	56	13	0	2	83	0.74
16282044--16282178	29	4.6	29	78	12	132	40	22	4	31	1.74
16282325--16282372	12	3.8	12	78	15	53	27	6	2	64	1.28
16283589--16283628	22	1.9	20	90	10	62	47	0	7	45	1.31
16286551--16286612	17	3.6	17	82	4	79	32	0	8	59	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16286562--16286636	18	4.2	18	79	8	64	36	1	5	57	1.30
16286551--16286618	35	1.9	35	84	0	91	33	0	7	58	1.26
16286609--16286651	17	2.4	18	92	3	70	39	6	0	53	1.28
16286562--16286648	41	2.1	41	89	0	129	36	3	4	55	1.38
16286580--16286636	6	9.7	6	79	11	55	38	1	3	56	1.27
16288423--16288630	29	7.1	29	78	11	176	36	27	2	32	1.72
16288436--16288630	88	2.2	87	86	6	261	37	27	2	32	1.70
16288436--16288660	29	7.7	28	78	8	141	36	28	2	32	1.71
16288520--16288660	58	2.4	57	84	6	176	34	32	2	29	1.72
16288520--16288740	29	7.7	29	74	7	146	33	29	3	33	1.75
16288521--16288740	85	2.6	85	79	5	201	34	29	3	32	1.75
16288694--16288775	28	2.9	27	74	12	67	31	28	7	32	1.84
16294004--16294059	9	6.7	9	78	15	50	82	0	16	1	0.76
16293991--16294066	16	4.7	16	73	19	59	80	0	15	3	0.86
16294018--16294071	7	8.1	7	80	12	69	83	0	16	0	0.65
16294013--16294071	12	4.7	13	87	10	63	83	0	16	0	0.66
16294018--16294071	13	4.2	13	90	7	83	83	0	16	0	0.65
16295153--16295294	53	2.7	53	81	8	150	34	18	33	14	1.90
16295001--16295488	49	9.8	49	74	10	319	33	17	32	17	1.93
16295721--16295904	39	4.7	39	80	2	181	23	32	20	22	1.98
16295721--16295904	78	2.3	79	85	2	246	23	32	20	22	1.98
16295971--16296352	175	2.2	174	88	2	570	37	17	22	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16296145--16296582	212	2.1	209	91	2	707	35	17	23	23	1.95
16296482--16296647	85	2.0	85	85	2	226	36	18	23	21	1.95
16296506--16296674	85	2.0	85	81	4	198	39	18	21	20	1.93
16297050--16297142	17	5.5	17	77	10	91	37	3	4	54	1.36
16297062--16297127	33	2.0	34	90	3	107	39	1	4	54	1.30
16298941--16299155	30	7.3	29	80	11	206	36	26	2	34	1.69
16298934--16299212	59	4.8	60	77	12	240	36	26	2	34	1.70
16298941--16299235	89	3.3	88	80	7	287	36	27	2	34	1.69
16311051--16311202	50	3.0	50	80	5	146	35	20	22	21	1.96
16311184--16311277	49	1.9	49	82	4	118	37	20	21	21	1.95
16311397--16311768	40	9.4	40	72	14	263	29	24	19	25	1.98
16311396--16311689	119	2.5	119	93	0	489	29	24	19	26	1.98
16311396--16311768	79	4.7	78	78	7	337	29	24	19	25	1.98
16313484--16313629	30	4.9	30	83	0	184	37	26	5	30	1.79
16313484--16313629	60	2.4	60	87	0	211	37	26	5	30	1.79
16313779--16313818	16	2.4	16	83	4	53	27	7	2	62	1.35
16316861--16317087	80	2.8	80	89	1	339	20	20	26	32	1.97
16317123--16317276	82	1.9	82	81	0	191	25	17	24	32	1.97
16320959--16321067	51	2.1	51	91	0	173	33	22	11	32	1.89
16324887--16325116	51	4.5	52	87	4	297	32	24	13	30	1.93
16331984--16332069	27	3.2	27	76	3	93	32	24	19	23	1.98
16339730--16339953	112	2.0	112	94	0	394	35	10	21	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16341728--16341883	27	5.8	26	72	10	102	37	19	17	25	1.94
16341764--16341918	54	2.9	54	79	3	143	34	21	18	25	1.96
16344885--16344924	14	2.9	14	84	0	62	35	20	27	17	1.95
16344875--16344933	28	2.0	29	87	6	84	35	18	27	18	1.94
16345743--16345817	30	2.5	29	78	8	78	37	20	6	36	1.79
16362267--16362291	11	2.3	11	100	0	50	28	8	16	48	1.74
16364291--16364340	21	2.4	20	77	9	55	28	18	26	28	1.98
16367699--16367746	21	2.3	21	79	13	55	37	0	6	56	1.25
16368411--16368436	3	8.7	3	100	0	52	30	0	0	69	0.89
16369946--16370078	6	24.0	6	69	18	74	41	1	4	52	1.31
16369940--16370078	17	8.1	17	77	7	138	41	1	4	53	1.30
16369952--16370004	11	4.7	11	74	4	52	39	1	3	54	1.29
16370020--16370060	10	4.1	10	93	0	64	36	0	7	56	1.27
16370020--16370076	10	6.1	10	76	15	50	38	0	5	56	1.22
16370751--16370826	11	6.8	11	74	15	50	34	1	2	61	1.18
16370759--16370829	28	2.6	28	79	16	78	33	1	1	63	1.12
16372017--16372333	29	10.8	30	79	10	291	35	23	2	38	1.68
16371973--16372333	30	12.3	30	78	7	305	34	23	3	38	1.71
16371995--16372333	58	5.8	59	81	5	323	34	23	2	38	1.69
16372513--16372553	19	2.2	19	86	8	57	31	14	4	48	1.65
16372606--16372799	97	2.0	97	87	2	282	29	17	17	36	1.92
16382467--16382516	17	2.9	18	73	8	50	68	6	0	26	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16382568--16382592	13	1.9	13	100	0	50	40	4	0	56	1.18
16386101--16386163	29	2.2	28	86	11	83	44	1	3	50	1.27
16386272--16386359	39	2.3	38	84	5	106	39	3	3	53	1.34
16387889--16387954	31	2.2	31	94	2	116	24	9	24	42	1.83
16390878--16390971	15	6.3	15	80	10	104	28	11	18	41	1.85
16394007--16394051	23	2.0	23	86	0	63	77	2	15	4	1.02
16394847--16394947	38	2.6	40	71	10	100	21	19	28	29	1.98
16396674--16396735	12	5.3	12	82	3	65	24	16	16	43	1.87
16396679--16396738	23	2.6	24	78	7	70	25	16	18	40	1.91
16396652--16396735	11	7.0	12	71	12	66	22	15	17	44	1.87
16398604--16399062	231	2.0	232	98	0	884	29	14	23	32	1.94
16400686--16400757	36	2.0	36	100	0	144	22	25	8	44	1.80
16401441--16401475	18	1.9	18	94	0	61	42	0	0	57	0.99
16407545--16407575	15	2.1	14	94	5	53	35	0	0	64	0.94
16408107--16408145	20	2.1	17	86	13	51	23	5	2	69	1.21
16409393--16409564	24	7.4	23	79	7	170	44	19	15	20	1.87
16413156--16413187	17	1.9	17	93	6	57	28	12	21	37	1.90
16413703--16413771	15	4.7	15	70	10	52	34	10	17	37	1.83
16416688--16416836	81	1.8	81	86	2	219	17	18	20	42	1.89
16416664--16416861	81	2.4	81	80	3	193	16	20	20	42	1.89
16418664--16418720	18	3.2	18	80	5	62	19	15	36	28	1.92
16418643--16418738	36	2.7	36	75	12	99	16	17	34	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16424443--16424594	29	5.2	29	84	2	198	29	3	30	36	1.76
16424447--16424595	59	2.6	59	85	2	203	30	4	30	34	1.76
16431604--16431642	18	2.0	20	85	9	55	41	0	0	58	0.98
16431730--16431771	22	1.9	22	85	0	57	28	0	2	69	1.01
16432106--16432140	18	1.9	18	88	0	52	57	14	14	14	1.66
16433657--16433694	20	1.9	20	100	0	76	7	26	0	65	1.19
16434929--16434974	13	2.8	18	69	30	57	30	0	26	43	1.55
16438265--16438316	26	2.0	26	88	0	77	26	3	7	61	1.41
16439416--16439479	20	3.2	20	80	6	76	37	3	1	57	1.24
16439416--16439460	21	2.2	20	88	4	63	40	2	0	57	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126