genome.fa.s1.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  38  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11454473--11454504	6	5.2	6	96	3	55	78	0	21	0	0.76
11467578--11467639	31	2.0	31	96	0	115	20	9	14	54	1.68
11468444--11468488	17	2.6	17	82	3	54	35	0	2	62	1.08
11469578--11469612	5	7.0	5	90	0	52	34	0	5	60	1.21
11488452--11488504	26	2.0	26	100	0	106	30	18	11	39	1.86
11489708--11489800	30	3.1	30	64	14	75	36	5	11	46	1.64
11493080--11493112	14	2.2	15	89	10	50	33	3	0	63	1.10
11498027--11498102	31	2.6	29	80	16	84	53	2	2	40	1.28
11498085--11498140	26	2.2	24	78	6	58	60	0	5	33	1.19
11502732--11502758	3	9.0	3	100	0	54	0	33	0	66	0.92
11503706--11503741	2	18.0	2	100	0	72	0	50	0	50	1.00
11504177--11504208	2	16.0	2	100	0	64	50	0	0	50	1.00
11505644--11505730	30	2.9	29	75	6	75	35	14	4	44	1.66
11506169--11506681	256	2.0	256	94	0	902	32	9	19	38	1.85
11512402--11512444	20	2.0	20	82	8	50	39	2	2	55	1.25
11512416--11512458	20	2.2	20	87	8	61	32	0	4	62	1.15
11515963--11516042	17	4.6	17	72	14	65	47	11	3	37	1.57
11515971--11516075	52	2.0	53	87	7	153	48	12	1	37	1.52
11516114--11516184	18	3.9	17	72	15	61	49	12	1	36	1.50
11519545--11519581	17	2.2	16	90	4	56	70	10	5	13	1.32
11519551--11520103	59	9.4	59	75	7	286	49	15	12	22	1.78
11519623--11519868	119	2.1	117	83	4	316	49	13	13	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11519647--11519925	119	2.3	118	81	5	303	47	14	13	24	1.80
11519851--11519987	60	2.3	59	83	8	163	49	14	10	24	1.76
11524763--11524842	31	2.6	30	86	5	99	32	3	11	52	1.55
11526559--11526583	4	6.2	4	100	0	50	48	24	0	28	1.52
11527203--11527240	19	2.0	20	84	5	51	31	5	15	47	1.68
11530513--11530570	3	19.3	3	100	0	116	32	0	0	67	0.91
11533759--11533864	17	6.2	17	81	2	115	36	0	5	56	1.29
11534676--11534700	12	2.1	12	100	0	50	48	0	0	52	1.00
11534666--11534700	15	2.2	16	90	5	54	48	0	2	48	1.16
11534677--11534723	21	2.2	22	85	11	62	48	4	0	46	1.21
11535937--11536130	30	6.5	29	75	10	153	37	22	3	36	1.70
11535969--11536199	59	3.9	59	80	9	238	35	24	3	35	1.74
11535969--11536159	30	6.5	29	74	15	146	37	23	3	35	1.73
11535990--11536207	118	1.8	118	82	7	282	36	23	4	35	1.74
11536342--11536389	20	2.4	19	80	19	53	20	10	8	60	1.55
11543463--11543563	36	2.8	36	84	3	123	37	17	27	16	1.92
11548323--11548395	29	2.4	30	82	8	87	34	15	4	46	1.64
11550491--11550547	29	1.9	30	83	16	75	50	3	0	45	1.18
11559908--11559946	20	2.0	19	95	5	69	46	5	17	30	1.70
11560247--11560325	37	2.1	37	88	4	115	41	2	15	40	1.60
11561672--11561720	18	2.7	18	83	3	53	42	4	12	40	1.61
11563029--11563457	141	3.1	139	87	3	610	27	20	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11564696--11564732	16	2.3	17	81	13	51	40	2	2	54	1.29
11568282--11568321	21	1.9	21	89	0	62	35	25	15	25	1.94
11569549--11569580	16	2.0	16	93	0	55	25	18	3	53	1.59
11578275--11578330	16	3.5	16	90	0	94	37	5	30	26	1.79
11578500--11578645	58	2.5	56	82	11	179	50	1	2	46	1.21
11582081--11582114	2	17.0	2	100	0	68	50	0	0	50	1.00
11590230--11590259	15	2.1	15	93	6	53	43	0	0	56	0.99
11593611--11593677	31	2.1	32	86	8	93	38	7	14	38	1.75
11593620--11593691	31	2.3	31	83	11	85	43	9	15	31	1.79
11598691--11598720	10	3.0	10	95	0	51	56	0	0	43	0.99
11599195--11599361	87	1.9	87	93	3	291	27	11	11	49	1.73
11599757--11599790	13	2.5	13	95	4	59	32	5	14	47	1.69
11606711--11606743	13	2.4	14	95	5	59	33	6	15	45	1.70
11613823--11613872	26	2.0	26	92	4	84	42	12	12	34	1.79
11620924--11620986	27	2.3	27	77	0	72	34	17	22	25	1.95
11621092--11621176	29	3.1	28	73	16	79	42	20	16	21	1.89
11621182--11621254	25	2.8	25	83	4	74	41	20	9	28	1.84
11623215--11623271	24	2.3	24	75	3	60	43	8	3	43	1.52
11623412--11623455	22	2.0	22	86	0	61	70	6	0	22	1.11
11624222--11624311	44	2.1	43	91	2	144	30	5	8	55	1.53
11624226--11624305	24	3.5	24	68	14	71	30	6	8	55	1.55
11635662--11635821	60	2.7	58	78	7	169	25	16	10	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11636067--11636125	29	2.0	29	90	6	93	42	8	20	28	1.81
11636114--11636167	27	2.0	27	82	10	67	61	11	5	22	1.50
11645674--11645712	17	2.3	17	86	8	53	17	12	23	46	1.83
11649025--11649075	21	2.5	21	84	9	70	5	1	27	64	1.27
11649020--11649097	11	7.3	11	67	11	54	5	3	25	65	1.30
11651991--11652026	19	1.9	19	88	5	56	55	0	2	41	1.14
11654455--11654582	64	2.0	64	92	3	213	42	10	18	28	1.83
11661148--11661217	2	35.0	2	100	0	140	50	0	0	50	1.00
11664167--11664245	17	4.6	17	76	3	70	39	3	5	51	1.42
11664171--11664235	34	1.9	34	84	6	87	33	4	6	55	1.45
11665000--11665027	3	9.3	3	100	0	56	64	0	0	35	0.94
11666159--11666318	59	2.7	60	85	3	209	36	21	5	36	1.76
11666159--11666318	30	5.4	29	77	8	153	36	21	5	36	1.76
11667372--11667433	31	2.0	32	83	3	81	22	12	6	58	1.58
11667700--11667963	29	9.0	29	76	10	191	35	25	3	34	1.74
11667700--11667963	59	4.5	57	76	11	196	35	25	3	34	1.74
11667732--11667963	88	2.6	88	80	10	262	35	25	3	34	1.73
11667887--11667988	29	3.5	29	72	18	77	30	24	4	40	1.76
11667750--11668025	59	4.7	59	75	7	170	32	25	4	37	1.77
11668589--11668906	156	2.0	158	81	6	376	33	18	14	33	1.92
11679459--11679680	46	4.8	46	84	2	302	25	19	24	30	1.98
11679457--11679680	92	2.4	92	93	0	376	25	19	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11680569--11680607	17	2.3	17	86	8	53	23	35	20	20	1.96
11685605--11685755	29	5.1	29	75	15	132	35	23	3	37	1.72
11685605--11685757	59	2.6	59	83	10	181	35	23	3	37	1.71
11685690--11685831	75	1.9	76	86	7	209	36	26	5	30	1.80
11685764--11686068	29	10.6	28	71	14	169	33	28	6	31	1.82
11685769--11686041	57	4.7	56	72	15	173	33	27	6	32	1.82
11685758--11686041	116	2.5	117	77	9	296	33	27	6	32	1.82
11685942--11686068	27	4.6	27	77	10	105	35	29	7	27	1.83
11690083--11690152	17	4.1	17	74	17	63	84	0	11	4	0.76
11690100--11690166	7	9.6	7	78	12	75	80	0	16	2	0.83
11690080--11690166	24	3.6	25	76	17	85	81	0	13	4	0.84
11690080--11690166	21	4.3	21	81	11	85	81	0	13	4	0.84
11690080--11690145	7	8.9	8	78	18	56	84	0	12	3	0.72
11690099--11690166	28	2.5	28	87	2	93	80	0	16	2	0.82
11690085--11690166	7	11.6	7	81	15	53	81	0	13	4	0.84
11691079--11691291	49	4.3	51	79	9	194	36	14	32	16	1.89
11691607--11691725	38	3.1	38	75	2	121	26	28	18	26	1.98
11691741--11692256	208	2.5	207	84	1	656	35	16	22	25	1.94
11692195--11692330	48	2.8	48	93	0	218	34	10	25	29	1.89
11692367--11692620	134	1.9	134	80	3	296	35	16	25	22	1.94
11693576--11693799	51	4.4	51	90	1	333	33	15	20	29	1.94
11702905--11703068	30	5.5	30	78	9	122	35	23	2	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11702939--11703082	30	4.9	30	77	9	127	32	24	2	40	1.70
11702939--11703050	59	1.9	58	85	8	156	33	20	2	43	1.66
11702904--11703064	59	2.7	58	72	16	150	35	24	3	37	1.71
11703003--11703341	88	3.9	87	71	14	266	33	25	5	35	1.78
11703119--11703368	29	8.6	29	73	10	129	33	26	6	34	1.81
11703121--11703194	31	2.5	29	81	14	89	32	22	6	37	1.81
11703294--11703450	29	5.5	28	78	7	122	32	24	8	34	1.85
11703024--11703388	88	4.2	86	71	16	261	33	25	5	34	1.80
11703024--11703399	87	4.3	86	72	16	274	32	26	5	35	1.80
11711025--11711161	31	4.5	31	74	10	124	60	1	13	24	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126