genome.fa.s1.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  94  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29022738--29022841	12	8.3	12	73	19	63	21	4	1	72	1.13
29027278--29027378	38	2.6	40	71	10	100	21	19	28	29	1.98
29029245--29029295	18	2.8	17	82	14	50	47	0	1	50	1.12
29033711--29033808	50	2.0	50	85	4	135	31	5	10	53	1.57
29040701--29040740	9	4.4	9	83	0	53	25	2	0	72	0.97
29040699--29040740	18	2.3	19	87	4	59	26	2	0	71	0.98
29040815--29040904	37	2.5	36	76	10	94	32	2	2	63	1.19
29040880--29040927	10	4.8	10	76	19	55	18	2	2	77	0.97
29043101--29043186	45	1.9	45	83	6	113	40	1	1	56	1.14
29045601--29045776	93	1.9	93	92	0	298	40	12	17	28	1.86
29050400--29050428	14	2.0	15	93	6	51	82	0	0	17	0.66
29054245--29054345	30	3.5	28	75	11	98	35	4	27	31	1.78
29054238--29054346	58	1.9	57	90	1	173	33	6	30	29	1.82
29054369--29054590	30	7.3	30	87	1	255	36	3	22	38	1.71
29054340--29054585	60	4.1	57	81	6	222	36	3	22	37	1.71
29055032--29055059	13	2.2	13	100	0	56	21	7	0	71	1.09
29055803--29055863	3	20.0	3	73	9	52	37	1	3	57	1.25
29056394--29056424	15	2.1	15	100	0	62	12	12	54	19	1.70
29056614--29056722	6	18.0	6	73	15	73	46	1	1	49	1.23
29056658--29056707	25	2.0	25	88	0	73	54	4	0	42	1.19
29056651--29056714	31	2.1	31	88	5	94	51	3	1	43	1.26
29056652--29056722	17	4.4	16	77	16	76	53	2	1	42	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29057049--29057606	38	15.6	38	77	14	589	27	20	18	33	1.96
29057008--29057457	106	4.2	105	95	1	801	28	20	17	33	1.95
29057049--29057611	249	2.3	242	89	7	828	27	20	18	33	1.96
29057403--29057607	106	1.9	106	96	3	376	26	20	20	33	1.97
29057086--29057606	144	3.7	143	82	10	603	27	20	19	33	1.96
29069559--29069691	65	2.0	65	89	2	205	36	4	27	31	1.77
29069688--29069997	30	10.3	30	87	1	415	34	4	23	37	1.75
29071207--29071267	3	20.0	3	73	9	52	37	1	3	57	1.25
29071797--29071827	15	2.1	15	100	0	62	12	12	54	19	1.70
29072017--29072098	20	4.3	19	73	14	62	43	1	1	53	1.16
29072017--29072125	6	18.0	6	74	15	82	47	1	0	49	1.18
29072061--29072110	25	2.0	25	88	0	73	54	4	0	42	1.19
29072054--29072117	31	2.1	31	91	5	103	53	3	0	43	1.16
29072032--29072125	42	2.3	43	83	5	113	50	2	0	47	1.13
29072055--29072125	17	4.4	16	79	16	85	54	2	0	42	1.14
29084918--29085014	30	3.3	29	81	4	122	38	5	22	34	1.77
29084932--29085025	30	3.1	30	71	8	84	38	5	19	37	1.74
29087015--29087060	21	2.2	21	88	7	67	36	4	4	54	1.40
29087871--29087910	21	2.0	20	85	5	53	72	5	2	20	1.15
29091821--29091848	14	2.0	14	100	0	56	28	21	14	35	1.92
29096439--29096501	24	2.6	24	89	0	90	52	7	14	25	1.68
29098613--29098638	4	6.5	4	100	0	52	50	23	0	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29098803--29098847	23	2.0	22	83	12	56	48	0	0	51	1.00
29100986--29101010	2	12.5	2	100	0	50	52	0	0	48	1.00
29101886--29101930	23	2.0	22	83	12	56	51	0	0	48	1.00
29102095--29102120	4	6.5	4	100	0	52	26	0	23	50	1.50
29104232--29104294	24	2.6	24	89	0	90	25	14	7	52	1.68
29104253--29104303	24	2.1	24	89	7	77	23	15	7	52	1.68
29106505--29107107	59	10.3	59	82	7	644	33	2	30	33	1.71
29106504--29107082	117	4.9	117	84	6	685	33	2	30	33	1.72
29107693--29107739	21	2.3	21	89	7	71	8	10	4	76	1.13
29108880--29108921	11	3.9	11	81	3	50	54	4	0	40	1.21
29109300--29110069	200	3.9	200	92	0	1251	20	23	20	35	1.96
29122064--29122498	59	7.4	59	83	5	486	34	3	29	32	1.74
29122224--29122498	30	9.2	30	63	28	90	33	3	30	32	1.74
29122064--29122498	118	3.7	118	83	5	538	34	3	29	32	1.74
29122060--29122499	177	2.5	176	84	4	575	34	3	29	32	1.75
29122196--29122468	29	9.2	28	64	26	93	34	4	30	31	1.76
29123094--29123140	21	2.3	21	89	7	71	8	10	4	76	1.13
29123343--29123584	120	2.0	120	97	0	457	14	19	24	40	1.90
29124395--29124457	16	3.8	17	75	6	67	55	4	0	39	1.21
29124379--29124450	27	2.7	27	77	0	72	52	4	1	41	1.29
29127446--29127473	14	2.0	14	100	0	56	35	14	21	28	1.92
29129501--29129554	24	2.4	22	73	17	56	61	5	1	31	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29130500--29130542	21	2.0	23	90	9	72	53	0	0	46	1.00
29131015--29131083	27	2.5	27	81	9	77	27	2	4	65	1.26
29135711--29136191	239	2.0	239	96	0	890	28	22	18	29	1.98
29165063--29165088	6	4.3	6	100	0	52	15	0	15	69	1.20
29166126--29166188	31	2.0	31	84	6	83	41	7	12	38	1.73
29166795--29166830	3	12.0	3	100	0	72	66	0	33	0	0.92
29168200--29168247	16	2.8	17	87	6	62	37	2	2	58	1.22
29170217--29170253	6	6.2	6	100	0	74	16	35	32	16	1.91
29170686--29170732	6	7.8	6	86	9	69	17	2	14	65	1.36
29170805--29170881	26	2.9	26	76	3	73	57	9	1	32	1.38
29173690--29173739	25	2.0	25	100	0	100	28	20	4	48	1.67
29173881--29174024	58	2.5	60	74	17	142	34	1	5	58	1.30
29174179--29174241	27	2.3	27	91	0	99	19	33	30	17	1.95
29180322--29180398	23	3.3	23	78	7	93	18	14	22	45	1.85
29180286--29180398	46	2.5	46	85	2	138	21	15	18	45	1.86
29180322--29180424	23	4.4	23	75	14	86	15	15	23	45	1.84
29181048--29181096	19	2.6	19	78	12	57	36	0	6	57	1.24
29181427--29181501	11	6.5	11	72	11	53	5	24	0	70	1.07
29181882--29181940	21	2.8	21	94	0	109	45	28	0	25	1.54
29181923--29181952	15	2.0	15	93	0	51	43	33	3	20	1.68
29181989--29182066	21	3.8	21	89	1	86	16	23	30	29	1.96
29182055--29182109	20	2.8	20	97	0	101	14	18	23	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29183996--29184045	21	2.4	21	96	0	91	36	20	12	32	1.89
29187351--29187395	4	10.8	4	82	17	56	20	4	0	75	0.97
29187647--29187691	4	10.8	4	82	17	56	20	4	0	75	0.97
29187346--29187951	296	2.0	296	97	0	1149	24	13	15	45	1.83
29188483--29188667	99	1.8	102	85	7	263	36	12	23	27	1.92
29189237--29189281	19	2.4	19	81	7	56	40	0	2	57	1.11
29202270--29202324	24	2.3	24	78	6	58	40	3	5	50	1.43
29203366--29203413	22	2.2	21	82	10	53	47	0	0	52	1.00
29203345--29203503	83	1.9	83	80	6	187	52	4	0	42	1.26
29208002--29208073	27	2.4	30	73	23	71	51	1	2	44	1.24
29208060--29208112	20	2.6	21	87	3	72	41	1	1	54	1.22
29208060--29208123	21	3.1	20	84	6	74	40	1	3	54	1.25
29225354--29225574	52	4.2	52	91	0	343	24	14	25	35	1.93
29232548--29232784	52	4.6	52	91	0	366	24	16	25	33	1.95
29233534--29233583	21	2.4	21	86	0	73	28	16	28	28	1.97
29241059--29241254	29	6.8	29	79	2	209	43	25	11	19	1.84
29242455--29242486	16	2.0	16	93	0	55	53	3	18	25	1.59
29244156--29244209	21	2.6	21	78	0	54	27	9	27	35	1.87
29247975--29248064	43	2.1	41	86	9	128	21	10	13	55	1.66
29247986--29248073	43	2.0	43	100	0	176	20	9	11	59	1.59
29248531--29248571	18	2.3	18	87	8	57	14	0	58	26	1.37
29248602--29248692	36	2.5	36	94	0	155	29	7	9	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29249614--29250062	161	2.8	161	86	2	602	35	17	14	32	1.90
29251845--29251894	22	2.3	22	89	0	73	62	16	4	18	1.48
29259693--29260562	435	2.0	435	100	0	1740	41	16	9	33	1.80
29261216--29261252	17	2.1	19	85	10	51	75	13	2	8	1.13
29277332--29277370	16	2.4	16	91	0	60	20	12	23	43	1.86
29277380--29277490	17	6.4	17	81	4	132	43	1	0	54	1.17
29277380--29277490	6	19.2	6	72	17	74	43	1	0	54	1.17
29277380--29277490	35	3.2	34	82	6	125	43	1	0	54	1.17
29278230--29278254	10	2.5	10	100	0	50	52	0	0	48	1.00
29279551--29279613	28	2.2	28	86	5	83	36	28	6	28	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126