genome.fa.s1.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  20  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6505969--6506021	27	2.0	27	100	0	106	20	3	11	64	1.42
6514407--6514551	74	2.0	74	98	0	281	42	22	8	26	1.82
6515447--6515580	69	1.9	69	80	5	155	45	6	3	44	1.48
6522634--6522702	28	2.4	28	80	11	77	63	1	1	33	1.12
6522631--6522700	15	4.9	15	68	18	51	61	1	1	35	1.14
6524252--6524290	7	5.6	7	87	0	51	28	0	25	46	1.53
6524244--6524290	14	3.4	14	78	0	58	27	0	27	44	1.55
6531451--6531559	58	1.9	58	90	1	175	48	15	0	34	1.52
6535791--6535849	24	2.4	25	80	2	66	35	1	5	57	1.31
6540311--6540337	14	1.9	14	100	0	54	44	14	14	25	1.84
6546251--6546443	52	3.7	52	87	0	278	34	22	12	31	1.91
6546251--6546444	104	1.9	104	90	0	307	34	22	12	31	1.91
6548747--6548784	18	2.2	18	86	13	53	50	10	0	39	1.37
6551794--6551818	13	1.9	13	100	0	50	96	0	4	0	0.24
6551793--6551821	14	2.1	14	100	0	58	93	0	6	0	0.36
6552449--6552549	30	3.3	30	81	4	112	42	7	2	46	1.48
6552449--6552553	31	3.4	30	84	6	122	41	7	2	47	1.47
6553679--6553714	2	18.0	2	100	0	72	0	50	0	50	1.00
6558435--6558498	28	2.4	28	89	5	96	57	10	6	25	1.56
6561794--6561853	29	2.1	29	100	0	120	51	6	20	21	1.70
6561849--6561887	20	2.0	20	94	0	69	48	23	2	25	1.63
6566077--6566113	18	2.0	18	89	5	56	32	5	13	48	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6568845--6568877	17	1.9	17	93	0	57	24	0	6	69	1.10
6572981--6574157	587	2.0	587	98	0	2275	27	11	25	35	1.91
6576186--6576398	24	8.9	24	87	0	264	22	25	18	32	1.97
6576186--6576398	48	4.4	48	89	0	300	22	25	18	32	1.97
6576209--6576399	24	8.0	24	89	0	292	21	26	19	31	1.98
6576186--6576399	72	3.0	72	86	0	293	22	25	19	32	1.97
6577398--6577436	21	1.9	21	89	5	62	46	23	0	30	1.53
6580530--6580563	17	1.9	18	88	5	52	14	14	14	55	1.69
6580956--6580993	20	1.9	20	100	0	76	47	13	13	26	1.79
6581635--6581703	17	4.1	16	70	10	57	53	4	4	37	1.41
6585380--6585558	24	7.5	24	81	0	205	26	24	16	32	1.96
6585393--6585558	72	2.3	72	91	0	269	25	24	16	33	1.95
6586528--6586566	21	1.9	21	89	5	62	46	23	0	30	1.53
6587258--6587390	66	2.0	65	95	1	239	44	10	13	31	1.78
6600279--6600343	31	2.1	31	85	0	85	35	18	3	43	1.66
6605057--6605235	96	1.9	96	83	0	232	31	29	15	23	1.95
6605146--6606096	120	7.9	120	83	1	1057	29	28	14	28	1.95
6607871--6607906	5	7.2	5	100	0	72	0	19	0	80	0.71
6609973--6610045	36	2.0	37	84	7	96	34	6	1	57	1.34
6613293--6613344	22	2.5	20	80	14	61	53	0	3	42	1.19
6613293--6613347	21	2.7	21	83	10	69	54	0	3	41	1.18
6613321--6613377	25	2.3	23	77	16	60	56	0	1	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6614767--6614828	27	2.2	28	85	8	81	54	0	0	45	0.99
6615355--6615428	37	2.0	37	89	0	112	56	0	2	40	1.13
6615374--6615740	170	2.2	170	84	7	480	41	1	10	46	1.47
6615685--6615748	28	2.2	29	86	10	96	46	3	3	46	1.34
6625861--6625895	18	1.9	18	88	0	52	68	0	0	31	0.90
6626902--6626956	26	2.2	24	87	6	74	34	0	0	65	0.93
6626908--6626972	13	5.5	12	72	24	50	32	0	0	67	0.91
6629277--6629371	24	4.0	24	97	0	154	29	18	31	20	1.96
6631972--6632034	32	1.9	34	84	12	87	58	6	9	25	1.53
6634351--6634380	3	10.0	3	100	0	60	33	0	33	33	1.58
6637715--6637794	31	2.6	30	84	5	90	47	11	5	36	1.61
6637715--6637794	29	2.7	29	82	5	88	47	11	5	36	1.61
6641177--6641245	28	2.4	29	88	9	97	59	4	0	36	1.17
6642921--6642968	25	1.9	25	83	8	62	27	12	0	60	1.32
6643636--6643864	112	2.1	112	85	8	317	36	6	12	44	1.69
6645102--6645135	15	2.1	15	89	10	50	58	0	0	41	0.98
6655447--6655490	18	2.4	18	85	7	54	45	13	9	31	1.75
6656349--6656393	22	2.0	24	86	8	67	46	11	17	24	1.81
6661306--6661372	35	1.9	35	87	3	100	52	4	4	38	1.42
6664779--6664828	21	2.3	22	82	3	57	32	10	2	56	1.44
6665614--6665641	2	14.0	2	100	0	56	50	0	0	50	1.00
6669210--6669304	22	4.3	22	69	17	63	5	6	21	67	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6669312--6669397	22	3.9	22	80	7	75	9	4	13	72	1.26
6669312--6669381	21	3.2	21	78	11	77	11	4	12	71	1.28
6670354--6670378	6	4.2	6	100	0	50	64	0	0	36	0.94
6680301--6680348	16	3.1	16	82	14	64	56	0	0	43	0.99
6686939--6687244	168	1.8	169	88	5	469	41	7	7	44	1.60
6687222--6687271	5	10.0	5	75	16	50	40	2	0	58	1.10
6687485--6687552	33	2.1	32	86	2	91	27	2	2	66	1.21
6690269--6690343	36	2.0	38	82	12	93	14	1	60	24	1.43
6690283--6690348	24	2.8	24	85	0	87	16	3	57	22	1.53
6690334--6690377	18	2.4	18	85	7	54	4	9	59	27	1.48
6690370--6690410	18	2.3	18	86	0	55	9	7	60	21	1.52
6690379--6690413	18	1.9	18	94	0	61	11	5	57	25	1.56
6690388--6690437	24	2.2	24	86	10	70	12	4	62	22	1.46
6690454--6690608	30	5.0	30	70	14	89	10	8	56	23	1.61
6690532--6690577	15	3.1	15	71	22	51	10	6	60	21	1.52
6691220--6691441	120	1.9	113	82	8	275	45	7	8	38	1.62
6708464--6708644	89	2.0	89	95	0	326	32	24	10	32	1.89
6709176--6709215	18	2.2	18	86	0	53	67	2	2	27	1.16
6709188--6709235	18	2.6	19	87	6	73	66	0	0	33	0.92
6709179--6709233	24	2.3	23	78	9	56	65	1	1	30	1.13
6714647--6714710	26	2.4	28	72	20	64	29	3	6	60	1.36
6715870--6715904	16	2.2	16	95	5	63	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6747294--6747382	26	3.4	26	86	6	101	19	35	21	23	1.95
6749885--6749927	14	3.1	15	90	9	65	39	0	0	60	0.97
6750267--6750304	19	2.0	20	89	5	60	73	5	0	21	1.02
6751879--6752018	71	2.0	71	94	0	244	45	12	11	30	1.78
6752002--6752052	26	2.0	26	100	0	102	54	3	3	37	1.37
6752699--6753616	452	2.0	457	87	5	1322	39	11	12	37	1.78
6754025--6754083	23	2.6	23	86	5	75	32	28	18	20	1.96
6763558--6763591	6	5.7	6	96	0	59	20	0	67	11	1.21
6771037--6771071	6	5.8	6	93	0	52	17	20	20	42	1.89
6773122--6773165	18	2.4	18	80	0	61	56	0	4	38	1.20
6773897--6773961	34	1.9	34	84	6	87	41	0	6	52	1.26
6773917--6773963	17	2.8	16	81	15	51	44	0	2	53	1.12
6773973--6774004	15	2.2	15	94	5	57	50	18	6	25	1.70
6774704--6774750	21	2.3	21	85	10	62	42	2	8	46	1.46
6774748--6774782	3	11.7	3	87	0	52	68	0	0	31	0.90
6775529--6775592	32	2.0	33	84	9	87	20	12	4	62	1.47
6775981--6776063	28	3.0	28	76	16	91	28	31	2	37	1.70
6775871--6776061	56	3.3	57	77	15	196	30	30	4	34	1.77
6788494--6788520	14	1.9	14	100	0	54	66	0	0	33	0.92
6789612--6789774	30	5.5	30	70	20	128	33	28	3	34	1.73
6789580--6789776	60	3.3	58	84	7	272	32	29	3	34	1.75
6789816--6789910	29	3.3	28	75	15	70	37	23	4	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6789580--6789893	58	5.4	58	75	12	279	31	27	3	36	1.74
6794540--6794580	14	2.9	14	80	20	50	53	2	7	36	1.42
6799752--6799807	21	2.7	21	97	0	103	33	37	7	21	1.81
6809757--6809796	19	2.1	19	85	0	53	72	0	5	22	1.04
6813589--6813621	15	2.2	15	100	0	66	42	24	6	27	1.78
6824958--6825010	24	2.2	24	96	0	97	20	62	3	13	1.46
6824950--6825012	24	2.4	26	82	15	85	20	60	4	14	1.52
6824979--6825045	33	2.0	33	88	0	98	14	62	1	20	1.39
6824979--6825057	33	2.4	33	85	4	88	15	60	1	22	1.42
6830183--6830306	25	4.8	25	72	22	71	28	12	7	51	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126