genome.fa.s1.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  51  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15220200--15220269	12	6.0	12	80	6	81	54	1	10	34	1.43
15220213--15220280	34	2.0	34	91	0	109	58	1	10	29	1.40
15220369--15220411	15	2.8	16	75	10	54	53	2	11	32	1.50
15220524--15220593	11	6.3	11	77	1	50	62	0	7	30	1.21
15220527--15220565	17	2.4	17	91	4	62	61	0	5	33	1.18
15220524--15220588	22	3.0	22	84	6	87	61	0	7	30	1.24
15220513--15220593	12	7.2	12	72	10	55	59	0	6	34	1.23
15220833--15220955	10	12.0	10	73	11	97	58	2	0	38	1.17
15220820--15220940	9	12.6	9	71	19	75	58	1	0	38	1.14
15220833--15220901	21	3.3	21	95	0	129	60	2	0	36	1.11
15220942--15221004	32	2.0	32	81	6	74	60	3	1	34	1.22
15221009--15221055	7	7.5	6	83	11	51	63	0	6	29	1.19
15220974--15221055	18	4.2	18	74	13	56	63	2	3	30	1.24
15221252--15221333	12	7.2	12	71	18	59	54	1	0	43	1.07
15221254--15221315	26	2.7	26	79	20	75	50	1	0	48	1.10
15221308--15221348	9	4.7	9	77	17	50	65	0	0	34	0.93
15221389--15221432	14	3.3	12	80	20	52	70	0	2	27	0.99
15222812--15222918	31	3.4	31	90	3	169	29	4	3	61	1.33
15222976--15223015	18	2.1	20	90	9	66	27	5	2	65	1.27
15223570--15223613	18	2.4	18	84	0	61	20	38	31	9	1.84
15223599--15223792	90	2.2	90	99	0	379	25	33	14	26	1.94
15224126--15224183	30	1.9	30	96	0	107	29	1	5	63	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15224158--15224209	27	2.0	27	84	3	70	36	1	0	61	1.07
15225110--15225327	110	2.0	112	80	8	248	34	15	20	29	1.93
15225091--15225329	111	2.2	112	79	9	258	35	13	18	32	1.90
15232958--15233017	32	1.9	30	87	12	86	58	11	10	20	1.61
15233853--15233900	9	5.9	8	81	18	55	64	0	2	33	1.05
15233857--15233900	17	2.5	17	85	10	54	63	0	2	34	1.07
15240059--15240242	93	2.0	93	93	2	316	29	7	16	46	1.74
15240810--15240851	9	4.7	9	81	0	57	23	9	19	47	1.78
15241000--15241043	19	2.3	19	88	0	70	54	6	2	36	1.40
15242904--15242956	25	2.1	25	89	6	81	20	18	28	32	1.97
15244003--15244035	14	2.4	14	90	10	50	24	3	9	63	1.38
15247491--15247529	17	2.2	18	86	13	55	20	2	0	76	0.90
15248487--15248586	6	16.8	6	75	9	71	39	1	4	56	1.25
15248492--15248578	17	5.1	17	78	2	102	36	1	4	57	1.27
15248495--15248579	35	2.5	34	82	3	107	37	1	4	56	1.28
15250277--15250502	29	7.9	29	69	10	117	38	24	3	33	1.74
15250265--15250490	57	4.0	56	78	8	215	38	25	3	32	1.73
15250498--15250556	28	2.0	30	87	6	86	40	27	1	30	1.66
15252076--15252108	14	2.4	14	90	10	50	24	3	9	63	1.38
15253562--15253605	18	2.4	18	76	0	52	27	27	27	18	1.98
15260828--15260867	14	2.9	14	96	0	71	32	20	27	20	1.97
15260831--15260879	7	7.4	7	73	13	50	26	24	30	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15263920--15263964	14	3.2	14	93	0	81	44	6	15	33	1.73
15269565--15269612	21	2.3	20	82	6	60	45	0	2	52	1.12
15269575--15269617	21	2.1	21	86	4	61	39	2	2	55	1.25
15282022--15282074	19	2.7	20	82	11	65	22	32	1	43	1.64
15281987--15282130	73	2.0	70	84	6	182	24	31	2	41	1.66
15282043--15282174	54	2.5	52	80	13	137	22	33	1	42	1.63
15283228--15283296	32	2.2	32	91	0	111	33	18	0	47	1.49
15286932--15286973	22	1.9	22	95	0	75	45	16	9	28	1.79
15288340--15288392	20	2.7	19	75	11	54	32	5	13	49	1.65
15288725--15288844	40	3.0	40	90	0	195	50	4	22	23	1.67
15289706--15289788	13	6.5	13	71	18	57	42	2	21	33	1.66
15289706--15289758	26	2.0	26	82	7	63	45	1	20	32	1.62
15304822--15304851	14	2.2	14	94	5	53	30	23	10	36	1.87
15309248--15309276	15	1.9	15	100	0	58	68	0	13	17	1.20
15309222--15309267	21	2.2	21	92	0	74	71	2	10	15	1.23
15310070--15310112	19	2.3	19	84	8	52	58	4	0	37	1.19
15315720--15315762	21	2.0	21	90	0	68	30	11	13	44	1.80
15315723--15315774	21	2.5	21	83	0	59	32	13	15	38	1.86
15317296--15317342	21	2.2	22	84	3	60	72	4	8	14	1.24
15317322--15317351	15	1.9	16	93	6	53	66	3	13	16	1.37
15317296--15317356	22	2.8	22	78	11	56	70	3	11	14	1.28
15318141--15318183	19	2.3	19	84	8	52	58	4	0	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15318892--15318924	16	2.1	16	94	0	57	39	12	24	24	1.89
15322486--15322566	29	2.8	29	92	0	126	22	7	33	37	1.82
15328344--15328407	22	2.8	22	83	7	74	54	9	0	35	1.33
15328377--15328430	9	5.6	10	82	8	51	61	7	0	31	1.24
15328395--15328466	9	7.9	9	78	9	65	59	1	2	36	1.20
15328384--15328465	18	4.4	18	70	13	60	57	2	2	37	1.25
15328901--15329118	10	22.8	9	64	20	61	36	2	3	58	1.27
15328903--15328964	19	3.3	19	71	13	56	33	0	3	62	1.11
15335687--15335734	24	2.0	24	83	0	60	47	2	31	18	1.60
15339345--15339427	40	2.1	40	88	0	121	38	1	25	34	1.64
15339302--15339486	100	1.9	99	89	1	289	37	2	26	33	1.71
15339315--15339459	70	2.1	70	88	0	209	35	2	28	33	1.69
15339300--15339520	30	7.1	30	79	11	230	36	2	28	33	1.70
15339385--15339520	59	2.3	58	88	6	200	35	2	27	35	1.69
15339275--15339518	129	1.9	130	87	2	357	38	2	26	32	1.71
15340540--15340577	11	3.5	11	85	0	58	10	0	10	78	0.95
15343581--15343616	17	2.1	17	94	0	63	55	0	25	19	1.43
15343940--15343982	17	2.9	14	78	18	50	41	4	2	51	1.35
15347723--15347753	14	2.1	15	94	5	55	32	0	0	67	0.91
15348503--15348541	14	2.7	15	88	11	55	64	2	0	33	1.08
15351616--15351660	23	2.0	22	87	8	65	35	0	0	64	0.94
15356926--15357009	36	2.3	36	76	8	107	15	17	33	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15359032--15359056	10	2.5	10	100	0	50	16	8	40	36	1.77
15359617--15359701	38	2.2	38	85	4	109	29	23	21	25	1.99
15367082--15367129	25	1.9	25	95	0	87	43	18	14	22	1.87
15369861--15369885	12	2.1	12	100	0	50	0	20	0	80	0.72
15377739--15377768	11	2.7	11	94	0	51	0	20	0	80	0.72
15405178--15405330	79	1.9	79	90	2	245	20	24	25	30	1.99
15419948--15420544	328	1.8	328	91	0	998	31	15	19	33	1.93
15422252--15422277	6	4.3	6	100	0	52	15	15	0	69	1.20
15422254--15422381	57	2.3	55	88	8	186	28	21	5	45	1.74
15433795--15433839	25	2.0	22	83	16	56	31	11	17	40	1.85
15435653--15435706	18	2.9	19	82	15	69	5	40	0	53	1.24
15451627--15451669	22	2.0	22	90	0	68	34	23	2	39	1.67
15452311--15452376	26	2.5	25	80	9	69	31	0	6	62	1.20
15452447--15452493	19	2.5	19	79	6	51	34	2	4	59	1.29
15458440--15458508	34	2.1	33	84	10	88	62	18	5	13	1.50
15461821--15461924	29	3.4	30	84	10	115	44	0	9	46	1.36
15461835--15461924	29	3.0	28	88	6	117	44	0	10	45	1.37
15462026--15462183	29	5.7	28	81	11	157	50	1	14	32	1.54
15462043--15462172	11	11.8	11	69	22	60	51	0	14	33	1.48
15462000--15462183	75	2.5	69	82	11	224	49	1	14	34	1.53
15461996--15462209	46	4.6	45	75	10	112	49	1	14	34	1.53
15462149--15462209	23	2.7	23	78	9	72	49	0	18	32	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15461870--15462260	6	67.5	6	71	12	122	50	1	13	35	1.49
15467929--15467960	16	2.0	16	100	0	64	12	12	18	56	1.67
15468193--15468222	16	1.9	15	93	6	51	0	16	0	83	0.65
15468968--15469014	21	2.2	21	85	7	60	2	31	10	55	1.46
15471181--15471225	20	2.2	20	88	7	65	68	2	13	15	1.30
15478633--15478692	21	2.9	21	77	5	68	43	31	11	13	1.80
15485310--15485340	13	2.4	13	94	0	53	35	6	29	29	1.82
15484774--15485523	373	2.0	362	91	4	1016	32	16	26	24	1.96
15485778--15485806	12	2.3	13	94	5	51	51	0	48	0	1.00
15506888--15506936	19	2.8	17	82	14	64	14	12	12	61	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126