Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  126  of  126  ( 15035 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38052054--38052082
15
2.0
15
93
6
51
68
0
0
31
0.89
38055034--38055061
14
2.0
14
100
0
56
28
21
0
50
1.49
38066708--38066746
21
2.0
20
90
10
62
51
0
15
33
1.44
38082864--38082932
33
2.1
33
100
0
138
36
8
14
40
1.77
38090846--38090870
5
5.0
5
100
0
50
20
20
40
20
1.92
38099935--38100102
81
2.0
83
84
6
218
42
11
7
39
1.68
38102143--38102180
20
2.0
20
89
5
60
7
23
5
63
1.42
38104222--38104292
27
2.6
27
91
4
108
38
2
7
52
1.44
38108830--38108879
21
2.4
22
80
16
61
30
30
12
28
1.92
38109190--38109245
13
4.5
13
74
14
55
48
0
3
48
1.19
38109418--38109459
2
21.5
2
95
4
77
52
0
0
47
1.00
38113529--38113761
51
4.6
51
90
1
342
28
23
15
32
1.95
38119522--38119758
51
4.6
51
86
1
305
34
13
22
29
1.92
38124039--38124094
21
2.7
21
81
13
71
30
30
10
28
1.91
38124772--38124920
61
2.4
61
93
2
246
36
19
13
30
1.90
38128356--38128399
22
2.0
22
86
0
61
56
4
0
38
1.20
38128366--38128440
37
2.0
39
84
10
102
58
9
1
30
1.38
38145707--38145829
23
5.3
23
86
5
140
45
21
21
11
1.83
38145666--38145809
69
2.1
68
83
12
177
44
20
22
12
1.85
38151851--38151897
22
2.1
23
88
4
69
12
21
27
38
1.90
38151902--38151979
25
3.2
24
90
5
129
11
26
16
44
1.82
38154358--38154406
25
2.0
25
84
8
64
10
22
22
44
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38167258--38167336
35
2.3
35
97
2
151
51
20
5
22
1.66
38167865--38167930
33
2.0
33
100
0
132
30
12
21
36
1.90
38168151--38168217
25
2.7
25
81
6
73
55
23
2
17
1.56
38169796--38169842
22
2.1
22
100
0
94
34
8
12
44
1.73
38170014--38170051
18
2.1
18
85
9
51
52
15
7
23
1.69
38170946--38171018
21
3.5
21
78
9
69
19
5
38
36
1.75
38170946--38170998
21
2.5
21
87
6
72
18
7
37
35
1.80
38170939--38171030
14
6.6
14
69
2
60
17
4
41
36
1.69
38170966--38171041
28
2.8
28
79
2
91
18
5
39
36
1.73
38171177--38171311
7
19.7
7
70
17
70
16
1
42
39
1.57
38171435--38171476
7
5.9
7
85
2
57
16
0
40
42
1.48
38173357--38173425
22
3.2
21
76
12
68
23
0
36
40
1.55
38173417--38174113
7
100.0
7
96
2
909
10
14
42
31
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126

The End!