genome.fa.s1.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  79  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23694641--23694679	16	2.4	17	87	12	55	20	10	5	64	1.44
23695865--23696828	215	4.5	214	83	7	1140	26	17	13	42	1.87
23696253--23696828	206	2.7	207	86	7	747	26	17	14	42	1.87
23697178--23697333	50	3.1	50	77	8	154	35	15	11	37	1.84
23698465--23699645	215	5.5	215	81	3	1335	27	17	13	41	1.87
23719799--23719835	14	2.4	16	82	13	51	40	35	5	18	1.74
23720245--23720387	63	2.2	66	86	5	193	37	6	4	50	1.51
23720249--23720418	63	2.7	61	81	8	166	36	5	5	52	1.48
23721117--23721166	21	2.4	21	80	6	57	26	12	4	58	1.51
23721338--23721362	12	2.1	12	100	0	50	24	0	0	76	0.80
23728980--23729432	123	3.7	123	87	1	622	24	22	15	36	1.94
23729623--23729718	49	2.0	49	85	4	131	16	26	14	42	1.87
23729679--23730210	50	10.7	50	78	5	463	17	29	16	36	1.92
23729679--23730194	149	3.5	148	78	5	511	17	30	16	35	1.92
23729628--23730243	99	6.2	99	79	4	492	17	29	16	36	1.92
23729628--23730235	198	3.1	196	78	8	615	17	29	16	36	1.92
23731911--23731946	9	4.0	9	96	0	63	0	25	0	75	0.81
23737808--23737851	15	2.9	15	86	0	52	75	9	15	0	1.05
23738035--23738170	67	2.0	67	86	0	191	34	4	7	53	1.49
23756199--23756243	23	1.9	24	86	13	67	33	4	6	55	1.46
23759046--23759083	13	3.1	13	85	7	53	0	21	0	78	0.74
23759464--23759509	20	2.3	20	82	14	51	54	0	8	36	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23776784--23776938	80	1.9	80	84	0	202	30	25	20	23	1.99
23796957--23796998	20	2.1	20	86	0	57	42	9	19	28	1.82
23798498--23798565	31	2.2	31	84	7	86	26	13	14	45	1.82
23805755--23805826	34	2.1	34	86	0	99	50	13	15	20	1.78
23810046--23810077	3	10.7	3	100	0	64	0	31	0	68	0.90
23810076--23810101	3	8.7	3	100	0	52	30	0	0	69	0.89
23819145--23819188	5	8.8	5	82	9	54	72	2	4	20	1.13
23828413--23828437	12	2.1	12	100	0	50	76	0	8	16	1.02
23833390--23833437	17	2.8	17	87	0	69	52	12	16	18	1.75
23833377--23833445	17	4.0	17	75	9	68	50	10	20	18	1.75
23835662--23835712	26	2.0	26	92	7	86	45	19	5	29	1.74
23848603--23848663	30	2.0	30	100	0	122	39	9	21	29	1.85
23860933--23860971	21	1.9	21	89	5	62	25	17	15	41	1.89
23870520--23870638	43	2.8	43	92	0	184	42	22	5	29	1.77
23876280--23876628	122	2.8	122	89	1	509	39	10	7	41	1.68
23876569--23876771	106	1.9	107	93	1	354	42	8	6	42	1.61
23886186--23886314	34	3.8	33	77	6	116	42	7	24	24	1.81
23886207--23886326	34	3.5	33	80	8	125	42	10	20	25	1.85
23888211--23888255	23	2.0	23	90	0	72	13	17	2	66	1.34
23889304--23889333	13	2.3	13	100	0	60	80	6	0	13	0.91
23890231--23890266	19	1.9	18	88	5	54	30	2	0	66	1.06
23890224--23890269	9	5.2	9	77	12	51	30	2	0	67	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23894128--23894170	18	2.4	18	80	7	52	51	0	2	46	1.13
23894191--23894255	27	2.4	27	87	5	87	32	13	9	44	1.76
23895610--23895639	15	2.0	15	93	0	51	26	26	3	43	1.70
23912206--23912275	36	1.9	36	100	0	140	34	10	25	30	1.89
23924649--23924837	52	3.6	51	85	4	236	31	13	24	30	1.94
23924649--23924837	104	1.8	104	85	6	267	31	13	24	30	1.94
23924786--23924903	59	2.0	61	83	3	150	33	13	23	28	1.93
23927863--23927954	24	3.8	24	74	5	87	30	16	25	28	1.96
23928981--23929023	15	2.6	17	79	20	56	44	6	11	37	1.68
23929847--23929904	28	2.1	28	87	6	82	41	22	8	27	1.83
23936315--23936364	25	2.0	25	84	7	66	18	12	8	62	1.53
23937391--23937447	28	2.0	28	86	0	78	42	26	8	22	1.83
23943216--23943240	8	3.1	8	100	0	50	88	0	0	12	0.53
23943736--23943771	15	2.5	15	90	4	56	16	0	8	75	1.04
23943921--23944287	42	9.0	40	85	5	425	23	16	26	34	1.95
23943921--23944287	162	2.2	163	83	8	467	23	16	26	34	1.95
23949925--23949986	28	2.2	28	86	11	83	51	6	12	29	1.65
23958036--23958086	25	2.0	27	88	7	79	35	27	17	19	1.94
23973731--23973783	18	2.9	18	80	0	61	41	22	11	24	1.86
23979958--23979995	3	12.7	3	100	0	76	65	0	34	0	0.93
23991153--23991188	15	2.5	15	90	4	56	16	0	8	75	1.04
23991226--23991591	109	3.4	108	82	2	410	31	23	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23995374--23995410	19	1.9	19	88	0	56	83	0	13	2	0.74
24003758--24003962	102	2.0	102	100	0	410	31	11	20	36	1.89
24016306--24016330	12	2.1	12	100	0	50	44	24	0	32	1.54
24018631--24018827	68	3.0	67	86	7	266	48	7	25	18	1.74
24018709--24018830	59	2.1	59	95	1	219	51	4	27	17	1.63
24032514--24032798	138	2.1	138	92	0	471	40	5	5	47	1.51
24034996--24035092	30	3.2	29	76	5	104	23	9	23	43	1.83
24035008--24035105	30	3.3	30	76	0	106	18	11	26	43	1.83
24035838--24035915	21	3.7	21	75	0	75	30	25	12	30	1.93
24039950--24040108	81	2.0	81	97	0	300	36	20	13	30	1.90
24044821--24044999	58	3.1	56	80	9	184	55	14	17	11	1.68
24047155--24047530	52	7.3	52	64	13	170	35	17	20	26	1.95
24047201--24047371	50	3.4	50	65	9	139	32	18	21	28	1.96
24047174--24047762	306	1.9	306	85	2	817	36	18	17	26	1.94
24047142--24047763	102	6.1	102	84	3	741	35	18	18	27	1.94
24048195--24048246	21	2.5	22	75	12	56	51	19	1	26	1.57
24049996--24050049	20	2.7	20	91	0	81	29	27	9	33	1.88
24052529--24052582	28	1.9	28	81	7	65	37	25	11	25	1.89
24055477--24055516	19	2.0	21	85	9	57	72	0	7	20	1.08
24064579--24064736	71	2.2	70	82	1	181	29	15	24	31	1.95
24076121--24076162	17	2.4	17	84	15	50	21	9	0	69	1.17
24082774--24082917	49	3.0	49	84	1	191	33	25	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24089883--24089930	18	2.7	18	90	0	78	6	14	10	68	1.37
24092326--24092388	24	2.6	24	82	9	83	31	25	22	20	1.98
24094515--24094595	27	3.0	27	89	3	110	32	20	19	27	1.97
24097440--24097468	14	2.0	15	93	6	51	55	0	44	0	0.99
24102401--24102432	16	2.0	16	93	0	55	21	28	12	37	1.90
24130472--24130548	37	2.1	37	83	13	97	40	2	2	54	1.28
24130532--24130580	20	2.7	18	77	22	57	42	2	4	51	1.32
24136451--24136571	20	6.1	20	83	0	161	38	20	19	20	1.93
24136451--24136571	40	3.0	40	90	0	179	38	20	19	20	1.93
24143175--24143241	31	2.2	31	83	2	82	17	17	4	59	1.53
24143490--24143697	108	1.9	109	89	1	319	33	13	14	38	1.86
24148771--24148817	22	2.1	22	84	11	60	48	23	10	17	1.77
24154539--24154606	15	4.7	15	78	7	70	30	13	13	42	1.82
24154539--24154606	29	2.3	29	92	0	118	30	13	13	42	1.82
24156025--24156136	46	2.4	46	83	0	134	33	17	15	33	1.91
24157913--24158180	55	4.7	55	74	12	195	27	24	16	30	1.97
24172156--24172203	25	1.9	25	100	0	96	8	31	8	52	1.61
24175434--24175513	23	3.5	23	80	0	88	27	18	23	30	1.98
24175516--24175586	22	3.2	22	79	2	88	18	19	38	23	1.93
24177274--24177308	12	2.8	13	86	4	54	74	0	11	14	1.08
24180104--24180141	17	2.2	18	85	4	51	5	15	0	78	0.91
24181173--24181230	24	2.6	23	77	20	68	3	36	0	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24185102--24185312	94	2.2	94	94	0	368	22	27	23	27	1.99
24191925--24191964	21	1.9	21	89	0	62	40	20	10	30	1.85
24193589--24193633	22	2.1	22	87	4	65	24	17	2	55	1.53
24204319--24204353	13	2.8	12	83	8	52	77	0	11	11	1.00
24217823--24217862	17	2.4	16	84	12	53	40	5	5	50	1.46
24218586--24218631	19	2.5	19	89	3	67	52	0	4	43	1.21
24219718--24219788	30	2.5	28	82	11	81	38	26	1	33	1.65
24219718--24219879	29	5.5	29	73	20	124	37	29	1	32	1.66
24219744--24219971	59	3.9	59	88	2	334	33	31	1	33	1.68
24219776--24219878	30	3.5	31	75	18	119	35	30	0	33	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126