genome.fa.s1.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  29  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8978700--8978767	30	2.2	31	84	7	86	33	2	22	41	1.69
8980697--8980774	6	13.8	6	72	12	58	55	2	2	39	1.27
8980709--8980781	17	4.4	16	84	6	83	57	2	1	38	1.22
8980721--8980762	22	1.9	22	90	9	68	64	0	0	35	0.94
8980709--8980781	33	2.2	34	85	2	94	57	2	1	38	1.22
8981134--8981861	200	3.6	200	89	2	1066	20	22	21	35	1.96
8982353--8982599	51	4.9	49	74	11	203	11	22	23	41	1.87
8982276--8982599	100	3.2	100	84	3	411	12	23	23	41	1.87
8982263--8982566	51	6.1	51	71	12	200	12	23	24	40	1.88
8982276--8982646	100	3.7	99	82	4	338	12	23	22	40	1.89
8983587--8983628	10	4.2	10	85	11	59	0	11	0	88	0.53
8983577--8983646	6	11.8	6	75	14	56	1	12	2	82	0.84
8983597--8983649	14	4.0	13	81	11	54	3	13	0	83	0.79
8985839--8985917	6	13.8	6	69	15	51	53	5	1	40	1.31
8985839--8985945	17	6.3	17	77	0	97	53	5	1	39	1.35
8985840--8985898	22	2.6	23	83	5	75	54	6	0	38	1.27
8987052--8987222	49	3.5	48	73	6	164	32	15	30	21	1.94
8987519--8987732	40	5.4	38	79	12	195	32	21	16	28	1.96
8987515--8987732	78	2.8	78	79	14	218	32	22	16	28	1.96
8987728--8987905	50	3.6	50	90	1	259	37	21	24	17	1.94
8987959--8988289	40	8.4	40	80	6	336	33	24	14	26	1.94
8987959--8988289	118	2.8	118	85	3	353	33	24	14	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8988312--8988646	154	2.2	154	90	1	519	38	18	19	23	1.93
9001924--9001981	19	3.1	19	85	5	64	29	13	24	32	1.94
9020518--9020575	22	2.7	22	71	12	57	44	0	1	53	1.10
9020508--9020588	23	3.6	22	74	12	58	48	0	3	48	1.19
9033314--9033343	4	7.5	4	100	0	60	23	50	0	26	1.50
9036679--9036709	16	1.9	16	93	0	53	35	0	3	61	1.12
9043976--9044003	2	14.0	2	100	0	56	50	0	0	50	1.00
9062604--9062646	6	7.3	6	81	5	52	65	0	4	30	1.13
9069233--9069261	12	2.3	13	94	5	51	17	48	17	17	1.82
9072096--9072192	48	2.0	48	91	0	158	27	23	18	29	1.98
9076968--9077001	2	17.0	2	100	0	68	50	0	50	0	1.00
9080943--9080971	5	5.8	5	100	0	58	37	0	62	0	0.96
9081276--9081314	16	2.4	16	95	0	69	43	7	20	28	1.79
9081484--9081629	58	2.5	56	82	11	179	50	1	2	46	1.21
9085561--9085619	25	2.2	26	88	11	93	30	20	6	42	1.78
9085573--9085621	25	2.0	25	100	0	98	28	20	6	44	1.75
9086445--9086864	139	3.0	139	96	0	770	42	20	14	22	1.88
9089141--9089174	13	2.7	12	86	13	50	50	2	0	47	1.16
9103044--9103089	19	2.5	19	86	13	69	26	2	0	71	0.97
9104322--9104371	24	2.2	23	82	7	57	30	4	8	58	1.45
9107159--9107202	18	2.4	18	96	0	79	22	11	27	38	1.88
9109547--9109586	20	2.0	20	90	0	62	45	0	5	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9109980--9110024	18	2.4	19	85	10	58	33	2	2	62	1.20
9116060--9116099	21	1.9	21	94	0	71	45	10	2	42	1.51
9124436--9124541	48	2.2	50	87	3	153	30	16	8	45	1.76
9130232--9130279	24	2.0	25	83	4	62	68	0	10	20	1.18
9131285--9131360	35	2.1	36	97	2	145	32	9	17	40	1.81
9134362--9134459	49	2.0	50	87	2	144	29	20	9	40	1.83
9139531--9139587	30	1.9	30	85	7	80	43	1	12	42	1.52
9144751--9144825	6	12.0	6	74	16	55	48	1	2	48	1.24
9145004--9145034	15	2.1	15	100	0	62	19	54	12	12	1.70
9146801--9147102	30	10.2	30	87	2	398	35	25	3	35	1.75
9146801--9147107	119	2.6	118	85	4	404	35	25	4	35	1.76
9147114--9147207	29	3.2	29	70	18	86	32	26	4	36	1.76
9147082--9147222	59	2.4	59	90	1	212	30	30	5	33	1.81
9147082--9147257	59	3.0	59	83	5	171	28	30	7	33	1.85
9159157--9160068	68	13.4	68	96	0	1590	33	18	20	27	1.96
9160369--9160443	6	12.0	6	74	16	55	48	1	2	48	1.24
9160622--9160652	15	2.1	15	100	0	62	19	54	12	12	1.70
9161152--9161200	16	3.1	16	80	8	64	63	2	0	34	1.06
9162410--9162695	30	9.6	30	85	3	357	35	23	3	37	1.72
9162401--9162695	60	4.9	60	91	0	448	35	23	3	37	1.72
9162401--9162695	119	2.5	120	89	0	448	35	23	3	37	1.72
9165813--9165877	22	3.0	23	82	6	73	35	1	0	63	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9166054--9166101	21	2.3	21	100	0	96	18	20	29	31	1.97
9168137--9168211	9	7.9	9	71	11	51	74	2	4	18	1.09
9168174--9168199	12	2.2	12	100	0	52	76	0	0	23	0.78
9168153--9168213	31	1.9	33	86	6	90	68	3	4	22	1.23
9168217--9168268	20	2.6	20	80	17	63	65	1	5	26	1.26
9168225--9168298	21	3.5	21	78	10	71	64	0	8	27	1.21
9187097--9187129	13	2.4	14	85	10	50	51	0	0	48	1.00
9187110--9187145	18	1.9	18	88	5	54	58	0	0	41	0.98
9190192--9190225	18	2.0	17	88	11	52	17	5	5	70	1.28
9195591--9195655	17	3.9	17	81	4	69	44	1	0	53	1.09
9195581--9195649	27	2.4	28	83	9	86	40	0	1	57	1.07
9195580--9195646	17	4.0	17	84	3	73	38	0	1	59	1.06
9195581--9195646	33	2.0	33	81	0	78	39	0	1	59	1.07
9195581--9195649	6	12.2	6	76	11	65	40	0	1	57	1.07
9195581--9195675	27	3.4	28	77	13	72	45	1	2	51	1.20
9197772--9197923	30	5.0	30	83	4	189	36	23	1	38	1.66
9197775--9197923	62	2.5	59	88	3	217	37	22	2	38	1.66
9207229--9207253	6	4.2	6	100	0	50	32	52	0	16	1.44
9213996--9214035	21	1.9	21	89	0	62	27	7	32	32	1.85
9218917--9219037	23	5.2	23	84	11	165	11	24	23	40	1.88
9218917--9219037	48	2.6	46	88	7	181	11	24	23	40	1.88
9219022--9219065	16	2.8	16	96	0	79	13	20	25	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9219052--9219145	23	4.0	23	75	16	86	11	25	19	43	1.84
9219185--9219297	56	2.0	56	100	0	226	37	10	30	21	1.87
9222712--9222754	16	2.6	16	96	3	77	11	30	6	51	1.65
9223327--9223365	18	2.2	18	90	0	60	46	7	12	33	1.71
9224872--9224930	31	1.9	31	89	0	91	30	15	8	45	1.75
9224875--9224949	29	2.5	31	82	4	91	29	13	10	46	1.76
9225213--9225262	26	1.9	26	95	0	91	68	8	2	22	1.26
9226522--9226558	2	18.5	2	100	0	74	48	0	0	51	1.00
9226952--9226995	15	2.9	16	86	6	56	61	0	0	38	0.96
9226971--9226995	5	5.0	5	100	0	50	60	0	0	40	0.97
9228029--9228067	20	2.0	20	89	0	60	10	56	0	33	1.33
9236798--9236823	3	8.7	3	100	0	52	34	0	0	65	0.93
9242873--9242911	20	2.0	20	90	10	62	43	0	5	51	1.24
9245005--9245070	31	2.1	31	85	0	87	30	7	6	56	1.52
9245018--9245082	31	2.1	31	88	0	94	26	7	10	55	1.61
9256961--9257013	20	2.7	19	77	13	54	35	5	1	56	1.34
9261403--9261436	17	2.0	18	88	11	54	47	0	11	41	1.40
9268106--9268151	17	2.7	18	83	13	69	32	0	0	67	0.91
9288114--9288147	18	1.9	18	88	5	52	29	0	5	64	1.17
9288221--9288289	26	2.7	26	79	0	75	52	1	2	43	1.25
9288959--9288988	2	15.0	2	100	0	60	50	0	0	50	1.00
9292913--9292969	29	1.9	29	89	3	87	52	12	5	29	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9303455--9303509	28	2.0	28	82	7	67	47	12	7	32	1.69
9303640--9303696	21	2.8	20	77	17	62	68	1	0	29	1.00
9303641--9303702	32	2.0	29	84	9	79	69	1	0	29	0.98
9303631--9303749	52	2.3	51	87	8	163	65	1	1	31	1.12
9303643--9303697	20	2.6	23	75	16	64	67	1	0	30	1.01
9303617--9303749	52	2.6	49	84	9	160	65	2	2	30	1.17
9311913--9311966	20	2.7	21	82	5	67	55	5	1	37	1.34
9311911--9311957	21	2.2	21	88	7	69	57	6	2	34	1.36
9318257--9318319	24	2.6	24	84	0	81	26	11	11	50	1.71
9319621--9319680	7	8.6	7	75	17	54	53	0	16	30	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126