genome.fa.s1.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  115  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34343302--34343464	81	2.0	81	90	2	256	36	25	12	25	1.91
34343383--34343505	52	2.4	52	88	2	185	34	24	13	26	1.93
34343250--34343505	133	1.9	133	90	1	406	35	24	13	26	1.93
34346496--34346552	3	19.0	3	100	0	114	66	0	33	0	0.92
34347172--34347296	66	1.9	66	81	0	151	44	11	18	25	1.83
34364351--34364410	31	1.9	32	86	3	86	40	10	31	18	1.84
34374481--34374935	29	15.5	28	67	11	203	36	4	26	31	1.78
34374444--34374937	59	8.4	59	90	0	756	36	5	27	31	1.79
34374888--34375084	30	6.6	30	86	4	247	35	3	24	36	1.71
34374446--34374993	177	3.1	176	84	8	697	36	4	26	32	1.77
34376846--34376883	12	2.9	14	84	11	53	15	18	28	36	1.92
34376961--34377068	6	18.0	6	75	14	89	48	1	0	49	1.18
34377004--34377053	25	2.0	25	88	0	73	54	4	0	42	1.19
34376997--34377060	31	2.1	31	91	5	103	53	3	0	43	1.16
34376975--34377068	42	2.3	43	83	5	113	50	2	0	47	1.13
34376998--34377068	17	4.4	16	79	16	85	54	2	0	42	1.14
34377954--34378004	22	2.3	22	83	10	59	49	3	7	39	1.51
34377961--34378004	22	1.9	24	86	9	65	45	4	9	40	1.56
34392746--34393001	125	2.0	123	94	1	413	33	29	17	19	1.95
34407711--34407805	4	23.0	4	82	4	82	25	3	4	67	1.24
34411884--34411923	20	2.0	21	90	5	64	32	2	5	60	1.32
34412967--34413049	40	2.1	40	100	0	166	36	21	4	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34427381--34427421	12	3.3	12	83	6	55	24	0	4	70	1.06
34427366--34427423	26	2.2	26	81	6	73	25	1	3	68	1.14
34427864--34427894	16	1.9	16	93	0	53	48	0	0	51	1.00
34441457--34441522	7	9.7	7	76	18	68	40	0	1	57	1.08
34441458--34441521	17	4.0	17	83	15	75	40	0	1	57	1.08
34441460--34441530	6	12.0	6	79	13	60	42	0	1	56	1.08
34441472--34441530	17	3.5	17	88	4	84	42	0	1	55	1.09
34443192--34443440	29	8.5	29	81	7	245	36	28	1	33	1.67
34443192--34443449	59	4.4	56	80	10	232	36	28	1	32	1.68
34448022--34448071	26	2.1	23	82	14	57	50	0	12	38	1.40
34449442--34449484	21	2.0	22	86	4	61	65	4	2	27	1.25
34454359--34454399	17	2.4	17	81	18	50	31	0	4	63	1.15
34455118--34455192	24	3.1	24	92	0	123	54	8	12	25	1.64
34457141--34457191	24	2.1	24	88	0	75	60	9	5	23	1.50
34457586--34457651	22	2.9	22	79	6	60	42	0	3	54	1.15
34463960--34463991	6	5.3	6	100	0	64	0	18	0	81	0.70
34465934--34465986	22	2.6	19	82	8	61	45	1	3	49	1.31
34467053--34467303	59	4.3	59	88	3	364	33	32	2	32	1.71
34467053--34467303	117	2.1	117	87	3	371	33	32	2	32	1.71
34469786--34469828	13	3.4	12	87	9	59	46	0	4	48	1.22
34480753--34480857	52	2.0	52	88	3	158	52	25	13	8	1.68
34484011--34484049	17	2.3	17	90	0	60	15	12	25	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34487148--34487186	17	2.3	17	90	0	60	15	12	25	46	1.81
34492666--34492695	10	3.0	10	95	0	51	10	16	0	73	1.09
34500472--34500513	17	2.4	18	80	15	52	23	23	0	52	1.47
34504879--34504960	11	7.5	11	76	0	65	68	4	6	20	1.31
34511784--34511834	20	2.5	20	81	9	59	78	0	15	5	0.93
34511784--34511852	12	5.3	12	73	20	50	78	0	13	8	0.97
34513449--34513482	2	17.0	2	100	0	68	50	0	0	50	1.00
34514235--34514288	25	2.1	26	82	3	65	74	1	12	11	1.16
34519823--34519856	13	2.5	13	90	4	50	64	0	0	35	0.94
34526885--34526942	17	3.4	17	80	0	71	46	1	1	50	1.22
34526897--34526952	6	9.7	6	74	14	55	51	1	0	46	1.11
34537933--34538455	200	2.6	200	84	2	645	36	18	22	22	1.95
34538801--34538841	17	2.4	17	91	0	64	41	0	2	56	1.13
34538812--34538876	17	3.9	17	78	9	71	47	1	1	49	1.20
34538810--34538885	6	13.3	6	72	15	63	47	1	1	50	1.18
34542435--34542473	6	6.3	6	90	3	60	30	0	64	5	1.15
34542429--34542469	18	2.3	18	82	0	55	36	0	56	7	1.27
34554696--34554792	50	1.9	50	97	0	185	41	14	14	29	1.85
34554790--34554838	14	3.5	14	77	0	53	34	22	16	26	1.95
34554785--34554864	28	2.9	28	81	9	92	36	17	15	31	1.91
34558463--34558527	29	2.2	28	80	17	71	46	1	1	50	1.20
34560007--34560075	24	2.9	24	86	0	93	28	11	5	53	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34562002--34562088	24	3.6	24	84	0	102	25	11	9	54	1.66
34565673--34565775	54	1.9	54	91	0	170	32	8	21	37	1.84
34567098--34567142	13	3.1	14	76	17	56	31	0	11	57	1.33
34571600--34571652	25	2.1	26	86	10	74	49	11	1	37	1.50
34576188--34576233	13	3.5	13	80	16	58	45	0	0	54	0.99
34580326--34580416	45	2.0	45	97	0	173	37	16	16	29	1.91
34593068--34593103	18	2.0	18	88	0	54	47	0	2	50	1.15
34605291--34605328	17	2.3	17	86	13	53	42	2	0	55	1.14
34609156--34609227	37	1.9	37	91	5	119	43	11	11	34	1.76
34612630--34612660	2	15.5	2	93	0	53	48	0	0	51	1.00
34613082--34613119	19	2.0	20	89	5	60	39	0	2	57	1.12
34629189--34629349	30	5.5	29	71	20	120	35	2	27	34	1.70
34629219--34629712	29	17.0	27	73	17	227	32	3	30	32	1.75
34629186--34629712	117	4.5	116	85	7	601	32	3	30	33	1.75
34629212--34629713	175	2.9	172	84	6	589	32	3	30	32	1.76
34629186--34629712	58	9.0	58	85	6	563	32	3	30	33	1.75
34631489--34631548	6	10.3	6	72	13	54	48	1	1	48	1.21
34631499--34631554	17	3.3	17	79	18	71	51	1	1	44	1.22
34631499--34631574	34	2.2	35	79	6	84	51	5	1	42	1.33
34648873--34648948	33	2.3	33	93	2	127	14	46	17	22	1.84
34648822--34648999	82	2.2	81	89	6	270	15	43	17	23	1.88
34650000--34650056	14	3.9	14	76	13	53	66	3	0	29	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34660282--34660557	90	3.0	91	81	6	322	29	10	7	52	1.62
34663665--34663719	27	2.0	27	89	0	83	21	18	34	25	1.96
34677166--34677208	17	2.5	17	100	0	86	39	0	25	34	1.56
34677166--34677218	9	6.1	9	76	8	56	39	0	26	33	1.57
34678795--34678844	20	2.5	20	74	6	57	48	0	6	46	1.27
34708916--34708967	20	2.6	20	75	24	56	48	0	3	48	1.20
34709011--34709053	18	2.4	18	80	0	50	44	0	4	51	1.22
34711083--34711118	14	2.6	14	91	4	56	0	36	0	63	0.94
34716665--34716707	18	2.4	19	84	7	63	23	27	18	30	1.98
34718365--34718405	19	2.2	19	95	0	73	46	7	4	41	1.53
34719747--34719777	16	2.0	16	93	6	55	12	9	12	64	1.50
34724339--34724411	36	2.1	34	85	7	94	41	12	15	31	1.84
34727147--34727193	18	2.6	18	100	0	94	48	12	12	25	1.77
34733494--34733547	28	1.9	28	85	7	74	27	27	9	35	1.87
34734341--34734381	21	1.9	22	85	5	57	36	24	4	34	1.77
34735294--34735318	13	1.9	13	100	0	50	8	8	0	84	0.79
34735960--34736256	122	2.5	122	87	4	431	32	1	15	50	1.54
34738261--34738293	16	2.1	16	94	0	57	21	9	6	63	1.45
34741107--34741146	7	5.2	8	90	9	50	85	0	15	0	0.61
34741115--34741146	7	4.6	7	100	0	64	87	0	12	0	0.54
34741107--34741146	14	2.9	13	89	10	62	85	0	15	0	0.61
34744573--34744604	5	6.4	5	100	0	64	43	0	56	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34750519--34750557	17	2.3	17	90	0	60	15	12	25	46	1.81
34751735--34751760	2	13.0	2	100	0	52	50	0	0	50	1.00
34755499--34755601	48	2.1	48	90	0	161	27	13	9	49	1.73
34755491--34755589	24	4.1	24	97	0	171	25	12	9	53	1.67
34759057--34759087	16	1.9	16	100	0	62	19	25	0	54	1.44
34761456--34761526	24	3.0	24	91	4	117	54	7	12	25	1.62
34764310--34764334	13	1.9	13	100	0	50	84	8	8	0	0.79
34765963--34766000	6	6.3	6	100	0	76	34	0	0	65	0.93
34766366--34766400	15	2.2	17	90	10	56	54	0	5	40	1.24
34768145--34768229	43	2.0	43	88	4	127	31	12	9	45	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126