genome.fa.s1.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  48  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14234545--14234599	22	2.5	21	80	11	58	67	1	3	27	1.17
14234544--14234569	6	4.3	6	100	0	52	65	0	0	34	0.93
14235741--14235836	30	3.2	30	75	10	81	37	21	2	38	1.66
14235757--14235848	30	3.1	31	80	10	102	35	27	2	34	1.69
14238025--14238372	58	5.9	58	80	5	317	32	5	27	35	1.79
14239481--14239514	15	2.2	16	94	5	61	44	0	0	55	0.99
14240280--14240315	18	2.0	18	94	0	63	41	5	0	52	1.24
14244379--14244500	50	2.4	50	80	0	136	33	21	23	21	1.97
14244525--14244771	40	6.3	40	77	6	231	30	27	15	26	1.96
14246714--14246870	59	2.6	59	82	9	192	38	22	2	36	1.68
14246714--14246870	30	5.2	30	82	6	192	38	22	2	36	1.68
14247985--14248055	20	3.5	20	71	9	72	52	0	0	47	1.00
14247997--14248058	14	4.5	14	69	18	58	54	0	0	45	0.99
14248003--14248034	11	3.1	11	86	13	50	53	0	0	46	1.00
14247980--14248064	41	2.1	41	95	2	154	49	0	0	50	1.00
14248574--14248610	16	2.3	16	100	0	74	29	10	16	43	1.82
14249131--14249160	12	2.5	12	100	0	60	16	0	16	66	1.25
14251762--14251809	24	2.0	24	84	8	62	41	0	35	22	1.54
14255563--14255588	2	13.0	2	100	0	52	50	0	0	50	1.00
14256821--14256932	30	3.8	30	78	9	88	38	24	2	34	1.69
14256915--14257108	29	6.7	27	68	22	92	29	25	5	39	1.79
14256920--14257020	30	3.4	30	71	15	102	31	22	7	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14256906--14257108	58	3.5	58	82	7	232	29	26	5	37	1.80
14256972--14257144	29	5.9	29	69	20	101	31	27	2	37	1.72
14261036--14261122	16	5.4	16	68	13	61	21	21	24	32	1.98
14261225--14261275	21	2.4	21	80	6	68	50	7	7	33	1.60
14263434--14263484	20	2.6	20	81	3	59	56	1	0	41	1.10
14264932--14265009	27	3.0	25	73	14	68	61	2	3	32	1.27
14264989--14265053	21	3.2	20	72	17	53	63	4	7	24	1.41
14265075--14265099	13	1.9	13	100	0	50	24	0	0	76	0.80
14265248--14265299	9	5.6	9	75	8	50	34	1	1	61	1.18
14265247--14265383	29	4.7	28	75	10	123	34	1	2	62	1.17
14265260--14265314	28	2.0	27	89	10	85	45	1	0	52	1.11
14267456--14267503	3	16.0	3	100	0	96	33	0	0	66	0.92
14272246--14272296	17	3.2	16	76	13	52	58	0	11	29	1.33
14273966--14274030	17	3.9	17	81	4	78	38	0	6	55	1.25
14273973--14274046	27	2.7	27	78	0	76	41	1	4	52	1.28
14273967--14274039	33	2.2	33	82	0	83	41	1	4	53	1.28
14273986--14274039	16	3.3	16	79	5	54	42	1	1	53	1.22
14274799--14274832	10	3.4	10	87	0	50	58	0	0	41	0.98
14276290--14276339	21	2.3	22	79	3	57	42	6	32	20	1.76
14284686--14284750	17	3.9	17	81	4	78	38	0	6	55	1.25
14284687--14284759	33	2.2	33	82	0	83	41	1	4	53	1.28
14284693--14284766	27	2.7	27	78	0	76	41	1	4	52	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14284706--14284759	16	3.3	16	79	5	54	42	1	1	53	1.22
14285493--14285526	10	3.4	10	87	0	50	58	0	0	41	0.98
14286614--14286831	29	7.5	28	69	22	137	32	29	2	34	1.72
14286608--14286837	58	4.0	58	88	4	340	32	30	2	34	1.72
14288624--14288677	24	2.3	24	84	9	67	44	0	0	55	0.99
14293946--14294017	28	2.6	28	90	0	126	31	15	30	22	1.94
14304904--14304978	38	2.0	38	91	0	123	30	22	21	25	1.99
14310486--14310808	153	2.1	152	85	6	422	35	14	17	32	1.90
14311321--14311610	59	4.9	60	81	5	306	35	3	28	32	1.75
14311468--14311572	30	3.5	30	67	18	85	34	1	30	33	1.69
14311317--14311612	119	2.5	118	85	1	387	34	3	29	32	1.75
14313892--14314540	200	3.3	199	92	2	1041	19	22	22	35	1.96
14313892--14314540	198	3.2	198	91	2	1012	19	22	22	35	1.96
14325149--14325206	25	2.3	25	93	0	98	39	17	18	24	1.92
14326007--14326326	151	2.1	151	85	4	430	35	13	17	33	1.89
14326811--14327225	59	7.1	59	81	5	407	34	1	29	33	1.68
14326971--14327065	29	3.3	29	68	16	88	30	0	31	37	1.58
14329109--14329171	18	3.4	18	81	10	74	50	3	3	42	1.34
14331935--14332000	29	2.2	29	84	10	80	39	4	18	37	1.71
14332007--14332264	30	8.8	30	88	3	269	37	1	24	36	1.65
14331955--14332266	59	5.3	58	80	8	282	36	2	24	36	1.68
14333360--14333410	18	3.1	17	75	21	54	31	1	1	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14334465--14335116	78	8.4	77	79	7	394	25	18	30	25	1.98
14334516--14335117	39	15.4	39	72	12	324	25	17	31	25	1.97
14334592--14335116	117	4.5	116	76	5	400	25	17	30	25	1.97
14334505--14335117	195	3.1	194	82	4	705	25	18	30	25	1.98
14340337--14340367	6	5.2	6	92	0	53	16	32	16	35	1.91
14340326--14340367	18	2.3	19	80	12	52	16	30	16	35	1.92
14342944--14343102	80	2.0	80	98	0	309	28	25	19	25	1.99
14344486--14344562	31	2.6	29	78	10	75	36	5	25	32	1.78
14344523--14344597	29	2.5	30	82	8	91	40	4	21	34	1.72
14344544--14344722	29	6.2	29	81	10	147	33	2	24	39	1.68
14344544--14344668	59	2.2	56	81	9	137	33	3	24	38	1.72
14344595--14344693	28	3.5	29	87	8	141	31	2	27	39	1.68
14344594--14344804	30	7.2	28	79	9	149	36	1	23	37	1.66
14344696--14344910	90	2.4	89	80	3	243	43	2	19	34	1.65
14344619--14344907	30	9.8	30	80	7	200	40	2	21	35	1.67
14346655--14346922	52	5.2	52	88	1	369	26	14	24	35	1.94
14347795--14347845	21	2.4	21	83	6	68	27	13	27	31	1.94
14352074--14352360	52	5.5	52	87	1	389	25	14	23	35	1.94
14362318--14362361	20	2.1	21	87	4	63	52	13	6	27	1.66
14362730--14362879	75	2.0	75	97	0	282	23	26	8	42	1.83
14366222--14366327	27	3.9	27	81	8	117	35	10	26	27	1.89
14371937--14372076	40	3.5	40	85	0	181	15	20	26	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14375765--14375827	31	2.0	31	96	0	117	42	9	7	39	1.67
14376917--14376957	2	20.5	2	100	0	82	51	0	0	48	1.00
14384360--14384400	21	2.1	19	90	9	64	0	17	2	80	0.82
14409820--14409866	24	2.0	24	91	0	76	14	25	10	48	1.76
14417360--14417384	13	1.9	13	100	0	50	72	0	8	20	1.10
14418419--14418455	19	1.9	19	88	0	56	48	10	18	21	1.78
14429005--14429055	20	2.5	21	81	15	54	47	0	11	41	1.40
14442956--14443048	37	2.5	37	84	1	116	24	18	30	26	1.98
14444596--14444645	17	2.8	18	84	9	75	72	0	4	24	1.02
14444596--14444646	18	2.9	17	83	16	68	70	0	3	25	1.04
14444646--14444707	31	2.0	30	82	14	74	54	4	0	40	1.22
14445480--14445556	24	3.1	24	83	7	84	27	9	6	57	1.54
14445502--14445556	24	2.3	24	93	0	92	27	7	5	60	1.46
14447474--14447536	24	2.6	24	84	0	90	25	12	11	50	1.73
14449504--14449554	26	1.9	27	84	11	70	21	19	3	54	1.60
14450690--14450724	10	3.7	9	88	11	52	65	2	0	31	1.07
14453055--14453129	27	2.7	27	91	2	123	25	24	16	34	1.95
14453974--14454002	13	2.1	14	93	6	51	79	0	0	20	0.74
14453945--14454004	23	2.5	24	76	13	61	66	1	3	28	1.17
14458760--14458807	23	2.1	23	88	7	71	56	2	0	41	1.11
14459938--14459977	14	3.1	13	86	10	55	22	7	2	67	1.28
14460411--14460437	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14461647--14461686	20	2.0	20	90	0	62	37	27	7	27	1.84
14464689--14464735	20	2.3	20	85	0	58	31	23	12	31	1.92
14473710--14474210	251	2.0	248	95	1	896	34	22	11	30	1.91
14475239--14475291	14	3.7	14	78	12	54	47	1	0	50	1.12
14478253--14478283	12	2.5	12	94	5	53	70	3	0	25	1.02
14481617--14481645	12	2.4	12	100	0	58	72	0	0	27	0.85
14482467--14482505	20	2.0	21	85	10	55	48	0	28	23	1.51
14484931--14485106	70	2.5	70	94	0	298	40	13	17	28	1.87
14492514--14492628	36	3.4	37	68	22	117	39	10	5	45	1.61
14492500--14492628	65	2.0	64	96	1	240	39	11	4	44	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126