genome.fa.s1.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  27  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8422838--8422865	14	2.0	14	100	0	56	35	28	0	35	1.58
8426811--8426883	30	2.4	30	81	6	85	35	12	10	41	1.78
8429224--8429598	59	6.4	59	88	0	511	31	1	32	34	1.69
8431535--8431575	16	2.5	17	84	8	57	60	2	0	36	1.10
8431546--8431595	23	2.2	24	79	17	61	54	4	0	42	1.19
8431535--8431587	27	1.9	28	84	3	72	56	5	0	37	1.23
8431553--8431595	11	3.9	11	82	8	52	53	4	0	41	1.21
8434350--8434393	14	2.8	16	80	16	56	52	0	0	47	1.00
8434865--8434910	15	3.1	15	70	17	51	54	13	8	23	1.66
8442168--8442206	17	2.3	17	86	0	51	17	12	23	46	1.83
8445903--8445956	23	2.2	24	90	6	83	57	0	5	37	1.22
8448910--8448959	24	2.1	24	96	0	91	22	14	8	56	1.64
8455323--8455362	20	1.9	22	90	10	66	50	12	0	37	1.41
8458897--8458924	3	9.3	3	100	0	56	0	0	67	32	0.91
8464668--8464728	26	2.3	27	85	2	88	22	24	22	29	1.99
8474655--8474689	18	1.9	18	100	0	70	54	5	22	17	1.64
8475094--8475133	17	2.3	18	86	4	55	45	0	0	55	0.99
8476115--8476156	20	2.1	20	91	8	68	66	0	2	30	1.04
8476113--8476165	20	2.8	19	73	18	56	62	0	1	35	1.06
8477757--8477815	24	2.5	24	100	0	118	42	13	11	32	1.81
8483191--8483234	21	2.1	21	95	0	79	36	18	34	11	1.86
8483112--8483306	105	1.9	105	88	0	300	35	17	25	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8483233--8483377	75	1.9	75	91	2	238	37	16	22	24	1.94
8483308--8483461	84	1.8	84	87	2	229	35	18	25	20	1.96
8484181--8484335	78	2.0	78	94	0	274	41	14	15	28	1.86
8484628--8484882	84	3.1	81	78	13	292	21	25	17	34	1.95
8484715--8484859	75	1.9	75	88	2	220	24	21	17	36	1.94
8484858--8484901	21	2.1	21	95	0	79	11	34	18	36	1.86
8484786--8485072	105	2.8	105	83	4	334	22	25	18	33	1.96
8521943--8522226	58	4.9	58	80	6	290	34	3	27	33	1.75
8522079--8522228	29	5.2	28	77	16	146	33	2	30	34	1.72
8524022--8524098	11	7.0	11	81	12	79	53	2	1	42	1.23
8524021--8524087	6	12.0	6	75	20	65	52	1	1	44	1.19
8524032--8524087	17	3.3	17	87	5	78	53	1	1	42	1.21
8524571--8524796	118	1.9	119	86	0	319	21	13	13	51	1.75
8524968--8525007	22	1.9	20	90	10	62	25	0	2	72	0.97
8535510--8535556	24	2.0	24	91	0	76	23	21	12	42	1.87
8538341--8538379	18	2.2	17	86	4	51	69	12	10	7	1.37
8539771--8539883	20	5.9	20	68	24	73	49	0	0	50	1.00
8539780--8539834	27	2.0	29	89	7	87	50	0	0	49	1.00
8540678--8540747	28	2.4	29	90	4	115	52	0	1	45	1.09
8540682--8540747	16	4.6	15	73	19	52	51	0	1	46	1.10
8543544--8543636	43	2.2	43	86	0	123	35	6	13	44	1.70
8545563--8545605	20	2.2	20	86	0	59	41	6	11	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8546833--8546875	13	3.3	13	81	9	52	30	30	13	25	1.94
8547369--8547421	13	4.1	13	82	0	61	30	32	13	24	1.93
8547200--8547545	189	1.8	189	88	1	534	26	21	14	36	1.92
8548098--8548152	28	1.9	28	82	10	67	32	9	9	49	1.66
8548885--8548920	11	3.2	11	88	4	54	38	2	0	58	1.13
8550752--8550942	30	6.4	30	78	4	197	37	19	1	41	1.61
8550752--8550942	90	2.1	90	82	1	231	37	19	1	41	1.61
8550752--8550964	60	3.5	59	80	6	239	37	20	2	39	1.66
8553488--8553673	50	3.7	50	71	14	148	39	21	26	12	1.89
8553498--8553673	51	3.5	50	73	12	144	40	21	25	12	1.88
8553456--8553673	101	2.2	100	85	2	294	41	21	24	12	1.87
8553678--8554227	93	5.9	93	94	0	890	35	10	16	37	1.83
8553697--8554859	92	12.6	90	89	4	823	34	15	16	32	1.91
8553681--8554456	186	4.2	184	86	5	853	35	13	16	34	1.88
8554198--8554863	92	7.2	92	91	1	1052	33	19	17	28	1.95
8554786--8554920	50	2.7	49	92	5	211	37	19	17	25	1.94
8555201--8555236	11	3.2	11	88	4	54	38	2	0	58	1.13
8557094--8557348	30	8.5	30	87	0	298	39	21	1	37	1.63
8557096--8557348	90	2.8	89	86	5	341	39	21	1	37	1.63
8565536--8565591	22	2.5	22	88	11	80	28	16	23	32	1.96
8569446--8569482	6	6.2	6	100	0	74	0	51	0	48	1.00
8571488--8571536	22	2.3	21	76	10	55	30	2	4	63	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8598842--8598985	73	2.0	73	88	0	216	29	15	20	34	1.93
8599710--8599737	3	9.3	3	100	0	56	32	0	35	32	1.58
8603376--8603469	6	16.2	6	70	18	65	44	1	1	53	1.14
8603376--8603469	17	5.4	17	84	5	125	44	1	1	53	1.14
8604203--8604227	10	2.5	10	100	0	50	52	0	0	48	1.00
8605291--8605404	29	3.8	30	84	5	160	34	27	5	33	1.79
8605286--8605404	59	2.0	59	91	6	197	33	28	5	32	1.79
8605290--8605437	59	2.5	58	84	4	154	32	26	6	35	1.81
8606580--8606617	20	2.0	20	84	5	51	44	7	13	34	1.72
8606769--8606806	16	2.2	18	86	9	53	55	2	2	39	1.28
8610939--8610990	16	3.2	16	75	17	54	44	1	0	53	1.11
8611589--8611623	18	1.9	18	88	0	52	54	0	0	45	0.99
8611584--8611623	21	1.9	21	89	0	62	52	0	0	47	1.00
8613046--8613082	18	2.0	19	89	5	58	35	0	16	48	1.46
8614658--8614712	20	2.7	21	85	2	67	69	1	3	25	1.15
8614826--8614871	8	5.8	8	80	10	58	71	2	4	21	1.14
8614945--8615003	30	2.0	30	86	6	84	30	5	5	59	1.41
8614941--8615025	30	2.9	31	77	16	83	35	3	3	57	1.33
8619929--8620116	92	2.0	93	97	1	360	37	15	13	32	1.87
8621693--8621996	156	2.0	147	85	5	410	28	19	20	30	1.97
8635997--8636041	20	2.2	20	84	7	56	24	6	0	68	1.13
8638701--8638977	51	5.4	51	92	0	430	28	23	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8645982--8646258	51	5.4	51	90	0	394	29	22	14	33	1.94
8648026--8648052	4	6.8	4	100	0	54	22	0	0	77	0.76
8648143--8648187	21	2.1	21	100	0	90	46	15	8	28	1.76
8648227--8648279	26	2.0	26	92	0	88	35	13	18	32	1.90
8650963--8651060	28	3.4	27	71	16	81	27	16	8	47	1.74
8651004--8651085	30	2.8	30	75	15	82	25	17	6	51	1.68
8651007--8651085	29	2.7	29	75	11	81	24	17	6	51	1.68
8653302--8653360	26	2.3	27	82	11	70	32	0	1	66	1.02
8654116--8654155	16	2.6	16	88	4	55	42	0	0	57	0.98
8655012--8655052	17	2.5	16	84	7	55	80	0	0	19	0.71
8655012--8655051	18	2.3	17	86	4	53	82	0	0	17	0.67
8655661--8655685	6	4.2	6	100	0	50	16	48	16	20	1.82
8661117--8661168	21	2.5	21	75	6	52	28	26	15	28	1.96
8661462--8661598	66	2.1	66	100	0	274	31	21	4	43	1.72
8665099--8665443	52	6.6	52	85	3	435	36	22	14	26	1.93
8665144--8665438	158	1.9	157	91	2	484	37	21	13	26	1.91
8668464--8668677	23	9.5	23	73	14	160	42	21	24	11	1.86
8668465--8668677	48	4.8	44	76	13	168	41	21	24	11	1.87
8668518--8668592	39	1.9	39	91	0	123	44	21	22	12	1.85
8674876--8675089	23	9.5	23	73	14	160	42	21	24	11	1.86
8674877--8675089	48	4.8	44	76	13	168	41	21	24	11	1.87
8674930--8675004	39	1.9	39	91	0	123	44	21	22	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8682656--8682709	16	3.4	16	76	5	56	48	0	1	50	1.11
8684368--8684854	59	8.3	58	85	8	526	33	28	2	35	1.72
8684453--8684662	29	7.1	29	65	24	77	33	29	3	33	1.75
8684368--8684854	117	4.2	118	85	6	602	33	28	2	35	1.72
8684484--8684819	29	11.5	28	64	24	106	33	29	2	34	1.72
8689296--8689393	31	3.2	31	78	11	121	54	16	6	23	1.64
8693818--8693845	3	9.3	3	100	0	56	35	32	0	32	1.58
8700736--8700776	15	2.5	15	85	14	55	34	4	0	60	1.18
8700764--8700828	30	2.2	30	86	5	87	43	3	1	52	1.26
8702038--8702078	17	2.4	17	80	19	50	46	4	0	48	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126