genome.fa.s1.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  123  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36710203--36710899	359	2.0	352	88	3	1029	22	23	19	33	1.97
36711384--36711464	30	2.7	30	81	7	85	45	20	1	32	1.59
36711642--36711739	29	3.4	28	70	18	76	33	25	1	39	1.63
36711442--36711724	59	4.8	58	89	3	415	33	28	2	35	1.69
36711442--36711755	117	2.7	116	87	3	434	33	28	2	36	1.70
36712250--36712534	154	1.9	152	90	2	455	32	17	15	35	1.91
36712800--36712843	21	2.1	21	82	0	52	20	4	20	54	1.62
36715202--36715237	15	2.3	16	95	4	65	61	16	8	13	1.56
36717125--36717402	29	9.5	28	76	11	231	38	23	4	34	1.74
36717095--36717395	146	2.1	146	86	6	423	39	22	4	33	1.74
36724383--36724667	153	1.9	153	90	1	464	35	15	17	32	1.91
36725177--36725275	29	3.3	29	69	13	85	38	1	26	34	1.63
36725193--36725476	59	4.8	58	89	3	424	35	2	28	33	1.69
36725258--36725475	30	7.5	28	65	22	101	35	2	28	33	1.70
36725227--36725447	30	7.4	30	65	21	117	36	2	27	33	1.71
36725208--36725517	29	10.6	29	65	23	123	34	1	27	35	1.68
36725444--36725532	29	3.1	29	80	6	83	32	1	21	44	1.59
36726337--36727054	200	3.6	201	87	2	974	34	19	23	22	1.97
36727494--36727529	15	2.3	16	95	4	65	61	16	8	13	1.56
36727570--36727635	34	1.9	35	87	3	98	42	33	13	10	1.79
36729422--36729699	29	9.5	28	76	11	222	38	23	3	34	1.73
36729443--36729673	88	2.6	87	83	6	297	38	23	3	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36729392--36729692	146	2.1	146	86	6	414	39	22	3	33	1.73
36729683--36729795	58	1.9	59	83	5	149	31	28	6	33	1.82
36737653--36737817	58	2.8	58	91	4	278	35	4	30	30	1.77
36737659--36737808	30	5.1	29	71	18	132	37	4	28	30	1.75
36737821--36738088	61	4.4	61	93	2	436	35	3	25	36	1.73
36737821--36738088	30	8.9	30	93	3	432	35	3	25	36	1.73
36738684--36738727	22	2.0	22	82	8	54	6	52	15	25	1.68
36739933--36739982	18	2.9	16	85	8	55	56	6	0	38	1.24
36739973--36740021	18	2.7	18	78	9	55	48	4	6	40	1.47
36739949--36740003	24	2.3	24	80	0	65	50	5	1	41	1.36
36741262--36741591	153	2.2	151	89	4	497	36	14	16	33	1.88
36742115--36742212	29	3.3	29	68	12	74	35	2	31	30	1.69
36742115--36742282	59	2.8	59	93	0	282	34	1	29	33	1.68
36742150--36742252	30	3.4	30	70	18	97	33	1	29	34	1.69
36742131--36742325	29	6.6	30	70	20	99	32	2	28	36	1.69
36742249--36742339	29	3.1	29	85	6	112	34	3	20	41	1.69
36744178--36744212	18	1.9	18	100	0	70	17	8	17	57	1.64
36746326--36746383	27	2.1	27	83	3	71	50	1	1	46	1.22
36746807--36746840	17	1.9	18	88	5	52	14	8	29	47	1.75
36748386--36748551	10	17.9	9	69	20	69	62	0	4	33	1.19
36748386--36748442	30	1.9	30	85	7	80	66	0	1	31	1.02
36748462--36748567	38	2.8	37	71	15	101	60	0	2	36	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36748718--36748778	19	3.3	19	73	17	65	27	1	1	68	1.08
36748719--36748789	18	3.8	19	77	18	78	28	2	1	67	1.13
36751755--36751795	18	2.3	18	86	0	55	46	0	0	53	1.00
36751762--36751804	18	2.4	18	84	0	59	48	0	0	51	1.00
36755575--36755609	18	1.9	18	88	0	52	28	40	17	14	1.88
36758923--36758965	18	2.4	18	84	0	59	48	0	0	51	1.00
36766071--36766112	21	2.0	21	85	0	57	40	26	11	21	1.88
36777381--36777426	23	2.0	23	82	0	56	19	17	15	47	1.82
36782149--36782173	9	2.8	9	100	0	50	68	0	0	32	0.90
36786175--36786209	2	17.5	2	93	0	61	2	0	45	51	1.16
36801184--36801226	22	2.0	22	81	9	52	39	2	2	55	1.25
36809770--36809827	30	1.9	31	85	3	82	63	12	5	18	1.46
36810975--36811029	20	2.8	20	81	10	60	70	7	3	18	1.25
36820266--36820321	24	2.4	22	77	13	58	48	1	1	48	1.22
36826103--36826143	21	1.9	22	85	5	57	48	2	4	43	1.37
36829165--36829212	20	2.2	22	75	17	55	45	29	16	8	1.76
36842739--36842773	14	2.5	14	90	0	52	65	5	2	25	1.28
36843856--36843898	15	2.6	17	78	14	54	62	0	2	34	1.08
36852866--36852898	17	2.0	17	88	5	50	48	3	9	39	1.50
36857302--36857334	16	1.9	18	88	11	52	54	12	6	27	1.60
36858545--36858582	17	2.3	17	90	4	60	31	0	0	68	0.90
36860011--36860054	22	2.0	24	82	13	58	65	4	2	27	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36868151--36868226	31	2.5	31	84	2	91	46	11	11	30	1.77
36873718--36873766	20	2.5	21	71	21	52	32	2	6	59	1.34
36874265--36874314	19	2.6	19	78	15	57	52	4	4	40	1.39
36875655--36875694	19	2.1	19	85	4	53	55	0	2	42	1.13
36879853--36879885	18	1.9	17	88	11	50	21	6	0	72	1.05
36880377--36880422	24	2.0	23	83	12	58	56	4	15	23	1.57
36890349--36890381	5	6.6	5	92	0	57	78	0	18	3	0.87
36892848--36892992	72	2.0	72	97	0	272	31	22	20	25	1.98
36896995--36897320	105	3.1	102	81	9	331	39	19	14	26	1.90
36896954--36897320	104	3.5	102	81	7	373	40	20	13	26	1.89
36898527--36898607	22	3.9	21	71	11	76	6	4	22	66	1.33
36898590--36898640	11	4.5	11	77	2	57	3	7	25	62	1.40
36898604--36898688	24	3.7	23	82	6	82	9	9	14	67	1.43
36901228--36901288	28	2.1	28	88	8	88	26	11	31	31	1.91
36901313--36901520	29	7.1	30	67	20	107	34	1	29	34	1.67
36901270--36901582	59	5.3	59	85	3	382	35	2	29	32	1.72
36901270--36901582	117	2.7	117	86	1	412	35	2	29	32	1.72
36901345--36901496	30	5.2	28	75	13	137	31	1	31	34	1.69
36901365--36901581	29	7.5	29	71	18	166	34	2	30	32	1.71
36903374--36903400	14	1.9	14	100	0	54	51	0	11	37	1.37
36907586--36907677	30	3.1	30	73	7	80	35	7	7	48	1.60
36909467--36909527	23	2.7	23	82	10	63	29	11	19	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36910369--36910403	16	2.2	16	100	0	70	42	0	5	51	1.25
36910961--36911003	19	2.2	20	87	4	61	55	6	2	34	1.39
36915502--36915558	29	1.9	30	82	3	71	49	10	3	36	1.55
36919402--36919462	28	2.2	28	91	2	97	18	0	29	52	1.45
36919414--36919469	14	4.1	14	78	17	64	16	0	33	50	1.45
36925185--36925252	30	2.2	31	97	2	129	63	5	7	23	1.43
36926228--36926437	114	1.8	113	85	7	291	22	19	16	42	1.89
36927123--36927165	18	2.5	17	80	3	50	20	2	9	67	1.30
36927273--36927320	23	2.1	23	88	0	69	45	0	0	54	0.99
36927726--36927773	19	2.4	20	82	6	53	35	2	4	58	1.29
36938000--36938052	16	3.3	16	76	5	54	52	1	30	15	1.53
36938570--36938598	2	14.5	2	100	0	58	51	0	0	48	1.00
36944208--36944237	3	10.0	3	92	0	51	33	3	33	30	1.74
36945331--36945355	5	5.0	5	100	0	50	20	0	0	80	0.72
36950574--36950753	90	2.0	90	100	0	360	38	14	11	35	1.82
36959311--36959351	21	1.9	22	85	5	57	65	17	9	7	1.44
36965126--36965318	103	1.9	101	93	3	334	41	6	6	45	1.55
36966957--36966983	4	6.8	4	100	0	54	25	0	74	0	0.83
36974503--36974541	20	2.0	20	85	10	53	64	12	7	15	1.49
36975614--36975800	61	3.1	60	79	10	170	35	5	16	41	1.73
36976825--36976867	22	2.0	22	85	0	59	51	13	0	34	1.42
36978475--36978523	10	4.8	10	80	5	53	53	0	2	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36986173--36986287	23	5.1	22	76	10	72	13	20	23	43	1.86
36986197--36986282	21	4.0	21	74	12	75	13	18	22	45	1.85
36986194--36986287	23	4.2	23	79	8	113	12	18	24	44	1.84
36991577--36991619	3	14.3	3	100	0	86	67	32	0	0	0.91
37017978--37018002	2	12.5	2	100	0	50	0	0	48	52	1.00
37027274--37027299	2	13.0	2	100	0	52	50	0	0	50	1.00
37031971--37032000	15	1.9	16	93	6	53	20	0	6	73	1.05
37035560--37035620	31	2.0	31	93	6	106	52	18	3	26	1.60
37036608--37036646	18	2.2	18	86	9	53	61	2	5	30	1.31
37037642--37037696	29	2.0	29	82	13	71	67	1	1	29	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126