genome.fa.s1.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  53  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15763611--15763743	37	3.6	37	80	11	139	37	9	20	32	1.85
15764309--15764367	31	1.9	31	85	0	82	30	22	8	38	1.83
15766153--15766204	25	2.1	25	85	0	68	40	21	28	9	1.84
15767375--15767433	19	3.1	19	83	9	75	45	1	3	49	1.28
15767511--15767704	40	4.8	40	78	8	185	19	21	19	39	1.93
15767453--15767628	42	4.2	42	77	9	171	18	23	17	40	1.91
15767485--15767668	82	2.2	81	86	3	244	17	21	19	41	1.91
15767485--15767690	82	2.5	80	82	9	236	19	20	18	40	1.92
15768997--15769169	81	2.1	81	87	5	242	40	3	15	41	1.63
15769158--15769206	20	2.4	21	82	6	64	32	10	26	30	1.89
15770837--15770900	24	2.7	24	85	0	92	32	14	12	40	1.83
15772646--15772677	17	1.9	17	93	6	57	9	6	9	75	1.20
15773001--15773042	21	2.0	22	86	13	61	57	9	0	33	1.31
15773195--15773345	78	1.9	79	94	1	268	43	11	2	42	1.55
15775051--15775165	15	7.7	15	76	14	112	24	29	18	27	1.98
15775052--15775169	45	2.6	45	90	2	175	24	28	18	27	1.98
15778483--15778518	18	1.9	18	88	5	54	80	8	5	5	1.01
15778475--15778520	19	2.4	18	82	10	56	78	8	6	6	1.10
15779660--15779740	26	3.1	27	77	8	78	30	1	1	66	1.07
15784602--15785153	59	9.2	59	86	7	699	34	1	30	33	1.68
15784608--15785153	175	3.0	174	88	5	761	34	1	29	33	1.68
15784638--15785022	30	13.1	29	66	18	140	35	1	29	33	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15785059--15785152	28	3.2	28	71	14	100	35	1	29	34	1.65
15785236--15785613	162	2.3	163	87	4	541	42	13	18	26	1.87
15786084--15786120	19	1.9	19	94	0	65	45	21	21	10	1.82
15786273--15786305	13	2.6	13	90	4	50	21	3	0	75	0.93
15786287--15786374	24	3.5	24	80	6	95	43	2	0	54	1.12
15786312--15786375	10	6.7	10	76	15	55	45	1	0	53	1.10
15786311--15786356	13	3.4	13	82	11	56	41	2	0	56	1.11
15787103--15787145	6	7.0	6	86	2	59	46	0	2	51	1.13
15787506--15788116	76	8.0	75	89	2	841	32	19	14	33	1.92
15787701--15788055	38	9.3	38	63	14	131	31	19	14	34	1.92
15796135--15796185	24	2.0	27	81	11	63	43	11	23	21	1.85
15800154--15800564	59	7.0	58	80	7	364	34	3	29	32	1.75
15800196--15800564	59	6.3	58	85	5	476	34	2	29	33	1.70
15800690--15801037	161	2.2	162	90	2	558	43	13	16	25	1.85
15801696--15801728	16	2.0	17	94	5	59	21	6	0	72	1.05
15801734--15801777	7	6.3	7	79	10	54	43	2	0	54	1.12
15801733--15801794	10	6.5	10	75	15	51	45	1	0	53	1.10
15801737--15801775	15	2.8	13	88	7	51	43	2	0	53	1.14
15807096--15807140	21	2.1	21	84	8	56	20	6	17	55	1.64
15808098--15808136	18	2.1	19	90	4	62	30	15	15	38	1.88
15808254--15808313	29	2.1	30	81	9	79	20	33	0	46	1.51
15808478--15808505	13	2.2	13	100	0	56	21	64	0	14	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15808569--15808608	18	2.2	19	86	4	55	22	32	0	45	1.53
15810031--15810132	28	3.7	28	88	2	143	48	3	19	28	1.67
15810031--15810138	55	2.0	55	87	3	155	48	3	19	28	1.66
15811060--15811117	13	4.5	13	75	0	53	44	1	24	29	1.63
15813162--15813195	13	2.6	13	90	0	50	41	0	20	38	1.53
15815458--15815515	13	4.5	13	80	0	62	43	1	25	29	1.65
15819001--15819040	20	2.0	20	85	0	53	37	0	7	55	1.29
15829888--15829930	19	2.4	17	88	7	59	69	6	0	23	1.12
15838414--15838440	13	2.1	13	100	0	54	14	14	14	55	1.70
15838580--15838691	39	2.8	39	78	9	118	26	19	23	30	1.98
15838580--15838795	42	5.3	38	73	14	141	25	19	23	31	1.98
15838662--15838816	80	1.9	84	85	5	219	26	18	23	30	1.98
15839115--15839861	49	15.2	49	75	5	497	20	29	15	34	1.94
15839115--15839862	98	7.6	98	83	2	869	20	29	15	34	1.94
15840227--15840442	112	1.9	115	86	5	314	38	9	20	30	1.85
15840442--15840480	21	1.9	21	89	5	62	46	15	17	20	1.84
15841566--15841610	21	2.1	21	88	8	65	0	15	8	75	1.03
15851021--15851063	11	3.8	11	80	17	52	65	0	2	32	1.06
15851292--15851346	29	1.9	28	82	10	67	21	18	5	54	1.63
15851542--15851668	63	2.0	63	90	0	200	33	12	18	35	1.89
15857982--15858007	2	13.0	2	100	0	52	50	0	0	50	1.00
15858721--15858775	28	1.9	29	85	3	76	18	3	1	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15858698--15858775	24	3.3	23	73	18	63	20	3	2	73	1.12
15858724--15858891	74	2.3	72	83	7	196	19	4	3	72	1.18
15858721--15858868	16	9.5	15	71	20	76	19	4	4	72	1.17
15866068--15866094	6	4.5	6	100	0	54	33	33	14	18	1.92
15870238--15870275	9	4.2	9	93	0	58	26	0	21	52	1.47
15880108--15880161	17	3.2	17	82	17	69	18	1	1	77	0.95
15880096--15880150	17	3.4	17	79	20	64	21	3	1	72	1.09
15880137--15880268	9	14.0	9	69	13	61	18	5	3	73	1.15
15880087--15880169	23	3.5	23	72	16	71	19	2	1	77	0.95
15880156--15880198	22	2.0	21	82	13	52	18	11	2	67	1.32
15880208--15880268	24	2.4	25	89	5	88	18	0	3	78	0.88
15880356--15880409	15	3.4	16	82	17	60	14	3	12	68	1.34
15881029--15881159	29	4.5	29	83	1	129	38	15	19	26	1.91
15881010--15881083	17	4.6	17	69	16	59	41	18	12	27	1.86
15881029--15881153	58	2.2	58	83	2	162	39	15	18	27	1.90
15881764--15882153	53	7.2	53	75	12	254	29	36	14	18	1.91
15881764--15882153	55	7.2	54	79	9	346	29	36	14	18	1.91
15886379--15886445	27	2.3	30	77	17	86	41	4	4	49	1.43
15886388--15886445	27	2.1	28	90	3	91	43	5	5	46	1.48
15886541--15886572	17	2.0	17	88	11	50	59	3	6	31	1.38
15886700--15886737	17	2.2	17	86	9	51	71	5	2	21	1.19
15886848--15886895	2	26.5	2	76	19	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15886841--15886895	11	5.1	11	79	18	62	52	0	0	47	1.00
15886809--15886903	11	9.7	10	70	18	58	55	1	3	40	1.23
15888283--15888461	64	2.8	64	83	12	231	53	2	0	44	1.13
15888371--15888401	15	2.1	15	94	5	55	77	0	0	22	0.77
15888451--15888704	126	2.0	127	95	1	458	43	8	15	32	1.77
15890687--15890712	12	2.2	12	100	0	52	23	11	23	42	1.86
15892100--15892129	15	1.9	16	93	6	53	73	0	0	26	0.84
15894461--15894514	18	3.1	17	77	17	58	31	0	3	64	1.11
15895493--15895551	21	2.8	21	84	5	75	54	11	11	22	1.69
15898037--15898158	29	4.2	29	88	1	154	31	5	27	36	1.80
15899403--15899469	21	3.2	21	73	12	57	58	1	2	37	1.23
15900585--15901233	99	6.6	97	75	9	438	16	32	16	34	1.91
15900660--15901233	198	2.9	197	82	4	683	16	32	17	33	1.92
15900470--15901013	248	2.2	247	80	2	622	16	32	17	33	1.92
15909822--15910005	29	6.2	29	76	11	133	36	3	25	34	1.74
15909745--15910007	29	9.0	29	74	13	107	36	4	24	34	1.75
15909822--15909983	88	1.8	89	85	4	229	37	3	23	36	1.71
15912644--15912681	11	3.9	10	83	16	53	5	0	21	73	1.02
15914784--15914817	14	2.4	14	100	0	68	32	38	0	29	1.58
15914982--15915032	21	2.4	22	83	9	70	21	17	21	39	1.93
15922215--15922252	20	1.9	20	94	0	67	13	13	26	47	1.79
15929936--15929960	10	2.5	10	100	0	50	80	0	12	8	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15936276--15936511	119	2.0	119	85	1	321	39	16	20	23	1.92
15936437--15936801	185	2.0	186	91	0	597	38	16	21	24	1.93
15936619--15937304	209	3.3	208	88	4	994	37	17	22	23	1.94
15949002--15949043	21	2.0	22	81	13	52	54	0	7	38	1.28
15955031--15955068	17	2.2	18	90	4	60	52	2	0	44	1.14
15954993--15955092	25	4.0	26	71	20	79	60	2	0	38	1.09
15955115--15955374	97	2.7	97	81	8	298	50	9	11	28	1.70
15964097--15964155	18	3.3	18	88	2	75	40	13	6	38	1.71
15964108--15964153	18	2.6	18	96	0	83	43	10	6	39	1.66
15969996--15970038	14	2.8	16	75	13	54	30	2	6	60	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126