genome.fa.s1.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  21  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6830240--6830313	22	3.1	22	72	14	58	29	10	4	55	1.53
6830517--6830545	15	2.0	15	93	6	51	41	0	0	58	0.98
6831542--6831590	25	2.0	25	84	8	64	30	4	4	61	1.33
6831547--6831605	25	2.3	26	77	14	68	32	1	5	61	1.28
6836923--6836971	21	2.2	21	85	10	62	34	4	6	55	1.44
6837626--6837669	21	2.2	21	84	15	58	27	0	4	68	1.09
6838411--6838439	13	2.1	14	93	6	51	27	37	10	24	1.88
6840932--6840982	25	2.0	27	88	7	79	56	11	5	25	1.57
6841752--6841797	24	2.0	23	95	4	83	28	2	4	65	1.23
6846884--6846947	23	2.8	23	80	2	76	37	26	23	12	1.90
6849532--6849718	52	3.6	52	88	1	277	26	14	22	35	1.93
6850244--6850336	48	1.9	48	95	0	168	24	8	30	36	1.86
6851650--6851744	33	3.2	33	63	25	82	45	6	6	42	1.55
6856438--6856490	23	2.4	22	84	6	63	58	3	5	32	1.39
6856903--6856932	6	5.0	6	100	0	60	0	50	0	50	1.00
6895780--6895864	42	2.0	42	100	0	170	31	14	14	40	1.85
6905091--6905128	19	2.0	19	100	0	76	31	10	10	47	1.72
6908600--6908624	13	1.9	13	100	0	50	56	4	16	24	1.57
6918944--6918976	14	2.3	15	89	5	50	30	0	0	69	0.88
6938186--6938212	3	9.0	3	100	0	54	0	33	0	66	0.92
6942097--6942134	16	2.2	18	90	9	62	39	0	0	60	0.97
6943948--6944043	41	2.3	41	81	1	120	45	4	8	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6945643--6946234	150	3.9	150	90	1	900	22	26	18	33	1.96
6952335--6952403	33	2.1	33	84	7	88	40	10	13	36	1.78
6960746--6960807	26	2.4	26	76	15	65	46	32	0	20	1.51
6960935--6961004	28	2.5	28	76	0	68	28	4	25	41	1.74
6960919--6961001	42	2.0	42	83	4	105	28	3	25	42	1.72
6961618--6961645	7	4.0	7	100	0	56	14	42	28	14	1.84
6964870--6964973	51	2.0	51	85	3	138	28	32	20	18	1.96
6973656--6973685	15	2.0	15	93	0	51	66	0	3	30	1.07
6988639--6988722	6	14.0	6	73	9	73	40	3	1	54	1.25
6988639--6988721	17	4.6	18	86	10	116	39	3	1	55	1.25
6988639--6988721	37	2.3	35	89	4	121	39	3	1	55	1.25
6989497--6989526	16	1.9	15	93	6	51	50	0	10	40	1.36
6990701--6990919	60	3.9	56	85	8	268	38	19	1	40	1.62
6990686--6990926	30	8.4	30	74	14	186	36	20	2	39	1.66
6990818--6990918	51	2.0	51	94	3	177	42	17	0	39	1.50
6990873--6991173	29	10.4	28	70	16	136	31	25	3	39	1.72
6990868--6991233	88	4.2	88	79	10	315	31	25	3	39	1.74
6990945--6991330	59	6.6	58	75	12	267	30	26	4	38	1.77
7002751--7003255	101	5.0	101	87	2	667	40	20	24	14	1.89
7002751--7003209	51	9.1	51	70	7	306	41	20	24	13	1.88
7002751--7003255	203	2.5	201	86	3	667	40	20	24	14	1.89
7003645--7003710	6	11.0	6	71	12	55	39	4	1	54	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7003645--7003709	17	3.6	17	82	11	85	38	4	1	55	1.30
7004943--7004972	16	1.9	15	93	6	51	50	0	10	40	1.36
7006151--7006466	30	10.6	30	76	4	257	38	21	1	38	1.61
7006161--7006446	60	4.8	59	83	6	328	38	21	1	39	1.60
7006138--7006609	30	16.0	29	71	12	205	36	23	1	38	1.66
7006420--7006580	59	2.7	58	81	8	189	31	22	3	42	1.69
7006390--7006790	88	4.6	85	70	18	232	30	26	2	39	1.71
7006559--7006877	59	5.4	58	78	7	279	31	27	2	38	1.71
7006441--7006777	29	11.5	29	68	20	141	30	26	3	39	1.72
7006770--7006873	30	3.6	29	68	12	79	35	25	2	36	1.71
7010079--7010122	22	2.0	22	82	8	54	43	11	0	45	1.40
7012659--7012731	29	2.4	29	78	13	76	31	2	9	56	1.46
7029176--7029243	2	34.0	2	100	0	136	50	0	0	50	1.00
7031506--7031551	24	2.0	24	91	4	76	17	0	13	69	1.19
7036594--7036780	92	2.0	92	96	0	347	23	13	12	50	1.75
7039912--7039973	31	2.0	31	87	6	90	43	8	12	35	1.73
7040388--7040419	3	10.7	3	100	0	64	65	0	0	34	0.93
7045777--7045810	18	1.9	17	88	5	50	50	0	5	44	1.26
7045916--7045993	41	1.9	41	97	0	147	30	21	15	32	1.94
7045919--7046009	41	2.2	41	86	0	128	34	21	10	32	1.89
7047081--7047145	31	2.2	31	86	5	89	41	13	12	32	1.82
7049713--7049743	16	1.9	16	93	0	53	51	9	9	29	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7051754--7051798	20	2.3	19	81	7	54	68	0	2	28	1.01
7051829--7051926	30	3.4	28	78	16	94	57	6	0	36	1.24
7051872--7051965	29	3.2	28	78	11	84	60	6	1	31	1.29
7051902--7051946	20	2.2	21	77	18	51	60	4	2	33	1.29
7058334--7058394	29	2.2	26	82	8	68	49	8	0	42	1.32
7071620--7071654	1	35.0	1	94	0	61	0	97	0	2	0.19
7073890--7073924	2	17.5	2	100	0	70	48	0	51	0	1.00
7074068--7074096	2	15.0	2	92	7	51	0	51	0	48	1.00
7081531--7081583	2	26.5	2	100	0	106	49	0	0	50	1.00
7084655--7084710	28	2.0	28	92	0	94	58	8	5	26	1.50
7085174--7085198	13	1.9	13	100	0	50	52	0	0	48	1.00
7085522--7085627	38	2.8	38	75	13	103	46	1	1	50	1.23
7086102--7086148	17	2.8	17	93	0	76	19	34	0	46	1.50
7087383--7087436	18	3.0	18	73	10	56	12	14	44	27	1.82
7091594--7091691	34	2.9	33	93	3	160	18	37	4	39	1.70
7091602--7091691	17	5.3	17	68	24	73	18	38	3	38	1.68
7093731--7093778	2	24.0	2	86	0	69	47	4	2	45	1.33
7094070--7094108	18	2.2	18	85	0	51	25	12	46	15	1.81
7094649--7094830	38	4.8	38	75	15	169	26	17	22	32	1.96
7094532--7094831	77	4.0	76	81	3	284	27	18	21	33	1.96
7095167--7095791	98	6.4	98	83	2	704	20	24	17	36	1.94
7095190--7095716	49	10.8	48	66	8	181	21	24	17	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7095190--7095791	292	2.1	292	86	1	850	21	25	16	36	1.94
7095167--7095791	194	3.2	195	83	2	731	20	24	17	36	1.94
7095537--7095768	49	4.8	48	67	9	130	21	25	17	34	1.95
7095630--7095789	49	3.3	49	71	10	155	22	27	15	35	1.94
7102897--7102940	18	2.4	18	84	0	61	18	13	47	20	1.82
7102971--7103014	15	2.9	15	86	0	70	15	22	38	22	1.92
7106134--7106178	22	2.0	22	84	16	58	62	2	0	35	1.08
7108119--7108168	21	2.4	21	83	6	57	46	2	2	50	1.24
7108155--7108201	13	3.2	14	77	17	51	40	0	2	57	1.11
7112703--7112736	3	11.3	3	93	0	50	5	32	0	61	1.20
7123427--7123453	3	9.0	3	100	0	54	66	0	0	33	0.92
7139531--7139597	30	2.2	30	86	0	89	34	4	10	50	1.57
7140456--7140498	23	2.0	21	82	17	52	46	2	2	48	1.27
7166308--7166337	14	2.1	14	100	0	60	66	0	13	20	1.24
7175528--7175611	30	2.8	30	80	1	89	50	3	2	44	1.32
7177455--7177531	29	2.6	28	78	8	82	27	6	31	35	1.82
7177518--7177681	28	5.6	29	77	14	124	34	3	26	34	1.74
7177578--7177681	28	3.6	28	85	11	131	36	2	25	35	1.71
7177444--7177681	57	4.1	57	75	11	189	31	5	28	34	1.79
7177585--7177717	28	4.6	28	79	11	124	33	3	24	38	1.71
7179356--7179432	6	12.8	6	73	14	61	54	3	1	40	1.27
7179364--7179452	18	5.1	18	86	5	121	56	2	1	40	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7179364--7179452	35	2.5	33	87	8	108	56	2	1	40	1.19
7184756--7184883	22	5.9	21	71	17	84	69	20	3	7	1.26
7184791--7184859	15	4.7	15	72	13	54	71	17	4	7	1.26
7184756--7184892	43	3.1	44	78	6	152	70	18	3	7	1.26
7184770--7184881	12	9.8	12	68	15	69	70	19	3	6	1.24
7184757--7184883	55	2.3	55	75	4	132	69	20	3	7	1.26
7184875--7184942	21	3.4	21	78	15	65	67	20	7	4	1.33
7184854--7184929	38	2.0	39	87	7	111	71	17	6	5	1.27
7186830--7186869	19	2.1	19	90	0	62	57	0	12	30	1.36
7193177--7193235	25	2.3	25	82	8	66	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126