genome.fa.s1.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  40  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11961909--11961989	31	2.7	31	78	3	85	39	14	11	34	1.82
11982395--11982442	23	2.0	25	88	8	73	45	14	27	12	1.81
11994521--11994593	18	3.9	18	74	16	69	35	2	2	58	1.26
12000561--12000606	23	2.0	23	100	0	92	21	21	13	43	1.86
12003452--12003538	30	2.9	30	91	0	147	40	3	34	21	1.71
12006587--12006739	78	1.9	79	94	1	272	28	16	16	37	1.91
12007129--12007237	48	2.3	48	88	3	166	49	9	10	31	1.68
12011793--12012025	23	10.1	23	84	4	299	45	14	6	33	1.71
12014945--12015022	36	2.2	36	88	0	111	33	25	14	26	1.94
12015091--12015367	23	12.2	23	82	2	335	45	14	5	33	1.69
12018608--12018639	15	2.1	15	100	0	64	40	21	12	25	1.88
12023965--12024030	28	2.4	28	84	5	80	40	4	1	53	1.31
12023962--12024024	11	5.7	11	75	12	58	42	3	1	52	1.27
12023976--12024049	28	2.6	27	79	12	78	40	4	4	51	1.40
12024258--12024316	20	3.0	20	94	0	100	16	45	16	20	1.85
12025109--12025167	30	2.0	30	86	0	82	54	0	15	30	1.42
12025994--12026315	30	10.7	30	90	1	477	38	23	3	35	1.71
12026294--12026427	58	2.3	58	87	3	182	32	29	2	35	1.70
12026328--12026422	29	3.2	30	73	11	106	32	27	2	37	1.69
12026294--12026461	58	2.9	58	79	6	164	30	29	4	35	1.78
12036024--12036069	18	2.5	18	82	10	58	54	13	8	23	1.66
12037699--12037800	40	2.6	39	74	11	100	56	1	3	37	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12037766--12037831	19	3.5	20	76	16	68	60	0	4	34	1.17
12037812--12037855	16	2.6	17	82	10	54	65	2	6	25	1.28
12054691--12054793	30	3.5	28	75	7	98	33	2	30	33	1.73
12054684--12054822	58	2.4	59	86	3	194	31	4	32	31	1.77
12054721--12054833	29	4.0	27	75	20	106	29	3	34	32	1.75
12054911--12055223	162	1.9	162	89	0	482	42	12	17	27	1.85
12055735--12055767	16	2.1	16	88	5	50	45	24	18	12	1.83
12056802--12056907	6	18.2	6	77	19	109	52	0	2	44	1.15
12056804--12056917	11	10.5	11	75	16	94	52	0	2	43	1.21
12056802--12056907	17	6.4	16	87	8	135	52	0	2	44	1.15
12056871--12056925	27	2.0	27	82	0	65	52	7	1	38	1.40
12057205--12057790	76	7.8	76	90	3	866	33	17	15	32	1.92
12057269--12057768	38	13.3	38	65	20	169	33	18	14	33	1.91
12069578--12069842	28	9.0	29	67	12	103	33	3	28	33	1.75
12069615--12069868	59	4.3	58	81	8	291	34	2	27	35	1.70
12069939--12070277	162	2.1	159	87	1	489	41	11	18	27	1.85
12071818--12071906	6	15.2	6	79	17	98	52	0	2	44	1.13
12071826--12071899	37	2.0	37	87	10	107	54	0	2	43	1.14
12071827--12071916	11	7.8	11	73	13	56	54	1	2	42	1.20
12071818--12071906	17	5.4	16	84	10	110	52	0	2	44	1.13
12071870--12071924	27	2.0	27	82	0	65	52	7	1	38	1.40
12074662--12074724	17	3.5	19	74	23	64	49	0	3	47	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12074662--12074739	36	2.2	37	82	13	92	52	0	5	42	1.23
12076400--12076439	21	1.9	21	85	10	55	25	22	10	42	1.84
12080557--12080591	18	1.9	18	88	0	52	31	14	8	45	1.75
12090607--12090691	41	2.1	41	100	0	170	28	29	11	30	1.92
12091180--12091253	30	2.4	31	95	2	132	51	0	1	47	1.09
12092145--12092213	29	2.4	29	100	0	138	49	2	36	11	1.54
12092260--12092289	7	4.4	7	95	4	53	56	0	10	33	1.32
12092293--12092346	21	2.5	23	91	8	87	50	0	0	50	1.00
12093017--12093158	56	2.6	54	85	6	178	46	10	16	26	1.80
12094305--12094362	30	2.0	29	86	3	80	27	3	15	53	1.58
12097687--12098055	49	7.7	49	67	16	198	16	24	18	40	1.90
12097670--12098049	97	3.9	98	82	6	393	17	23	18	39	1.92
12111980--12112005	3	8.7	3	100	0	52	0	30	0	69	0.89
12116050--12116085	17	2.2	17	90	5	56	36	2	2	58	1.27
12116523--12116583	25	2.4	25	100	0	122	50	0	13	36	1.41
12120054--12120132	43	1.9	40	89	7	122	41	7	2	48	1.45
12121552--12121802	30	8.5	30	79	5	172	39	21	5	34	1.76
12121582--12121803	60	3.8	58	75	9	200	39	20	4	35	1.74
12121581--12121831	30	8.5	29	78	8	177	38	20	5	35	1.75
12121574--12121860	148	1.9	147	79	6	321	37	22	4	34	1.76
12121790--12121892	29	3.4	30	80	9	104	34	26	3	34	1.75
12125086--12125259	29	6.0	29	75	13	128	37	5	24	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12125096--12125228	57	2.3	58	84	3	171	36	4	26	33	1.77
12126972--12127048	17	4.6	17	85	4	95	58	6	1	33	1.32
12126976--12127057	34	2.4	34	89	4	121	57	6	1	35	1.31
12126974--12127057	17	5.0	16	80	8	78	58	5	1	34	1.30
12137140--12137747	39	15.7	39	70	10	244	26	31	18	24	1.98
12137101--12137757	78	8.5	78	74	8	369	26	31	18	24	1.97
12137138--12137498	155	2.3	155	80	7	394	26	30	18	24	1.98
12137177--12137732	116	4.8	116	74	8	423	25	31	17	24	1.97
12138221--12138287	17	3.9	17	88	2	89	37	1	4	56	1.29
12140158--12140403	30	8.3	30	77	11	170	38	26	4	30	1.76
12144830--12144876	20	2.3	21	78	7	53	23	8	10	57	1.60
12148833--12148918	43	2.0	43	84	4	111	32	3	20	43	1.69
12149147--12149307	85	1.9	85	86	0	232	19	7	27	45	1.77
12149553--12149624	19	3.6	20	78	19	71	62	2	9	25	1.39
12149562--12149624	9	6.4	9	77	18	56	65	1	9	23	1.31
12149553--12149627	39	1.9	39	89	5	116	61	2	9	26	1.40
12150059--12150089	16	1.9	16	93	0	53	61	6	29	3	1.37
12153066--12153457	191	2.0	192	93	0	669	35	16	24	23	1.95
12160402--12160514	59	1.9	59	94	1	201	37	7	15	40	1.74
12164349--12164391	18	2.5	18	92	7	72	65	0	4	30	1.13
12173360--12173388	15	1.9	15	100	0	58	31	0	0	68	0.89
12174492--12174520	6	4.8	6	100	0	58	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12177164--12177200	12	2.8	13	84	15	58	35	5	0	59	1.20
12177453--12177477	13	1.9	13	100	0	50	16	0	0	84	0.63
12178261--12178299	13	3.1	12	82	13	51	51	2	2	43	1.29
12187242--12187287	21	2.3	20	78	17	51	6	39	2	52	1.40
12188214--12188246	5	6.6	5	92	0	57	78	0	18	3	0.87
12191832--12191899	29	2.3	29	97	0	127	35	5	17	41	1.74
12196291--12197693	468	3.0	464	89	2	2105	32	22	16	27	1.96
12205788--12205876	19	4.6	19	69	21	60	62	1	3	32	1.19
12205828--12205868	9	4.6	9	85	8	57	68	0	2	29	1.03
12205788--12205867	10	8.3	10	71	16	62	65	1	3	30	1.18
12205793--12205914	57	2.1	58	87	4	176	60	2	6	30	1.35
12205796--12205893	29	3.4	28	78	13	110	59	2	6	32	1.34
12206083--12206144	19	3.3	18	75	6	61	29	3	1	66	1.17
12206084--12206158	37	2.0	38	86	2	107	32	4	2	61	1.28
12206193--12206242	19	2.7	18	77	20	57	36	2	0	62	1.07
12206168--12206219	27	1.9	27	84	7	70	32	1	0	65	1.04
12210730--12210761	9	3.4	9	91	8	55	59	0	0	40	0.97
12210730--12210758	10	3.0	10	95	5	51	58	0	0	41	0.98
12211832--12211964	57	2.3	57	83	2	160	33	28	4	33	1.77
12211936--12212017	29	2.8	29	87	5	112	31	24	8	35	1.86
12212000--12212074	27	2.7	27	88	10	107	29	26	10	33	1.90
12212055--12212129	29	2.6	30	81	12	86	33	26	5	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12221200--12221415	117	1.8	117	90	0	351	25	29	18	25	1.98
12221244--12221415	39	4.4	39	74	13	138	25	29	19	26	1.98
12221283--12222317	78	13.3	78	79	2	927	25	27	19	27	1.99
12221283--12222317	156	6.7	155	83	2	1119	25	27	19	27	1.99
12221400--12222242	39	21.7	39	65	8	206	26	27	18	27	1.98
12222798--12222845	17	2.8	17	87	3	69	41	4	2	52	1.32
12223513--12223544	9	3.4	9	91	8	55	59	0	0	40	0.97
12223513--12223541	10	3.0	10	95	5	51	58	0	0	41	0.98
12224590--12224901	29	10.8	29	76	11	189	33	27	5	33	1.79
12224581--12224814	58	4.1	56	77	11	208	35	27	3	32	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126